transcript:BL85171_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85171_cuf0
Unique Nametranscript:BL85171_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85171_cuf0

>transcript:BL85171_cuf0-protein ID=transcript:BL85171_cuf0-protein|Name=transcript:BL85171_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=165bp
EDEILDSVRNLKTNKAPGIDNLLPEFFRESTSTLLPYLKSLFNKCFTLGV
IPQQWTIGIIQPLFKSGCKDDAANYRSITLLSVFGKIFLTILGNRLNNWA
QVEGKLVESQMGFRKGYGVLDNLFCLNSLIQKYLTRPRGRFYCAFVDFSK
AFDSVNRVYLWWKLL
Run BLAST on NCBI

mRNA from alignment at Sc0000147:682878..683376+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85171_cuf0 ID=transcript:BL85171_cuf0|Name=transcript:BL85171_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=499bp|location=Sequence derived from alignment at Sc0000147:682878..683376+ (Branchiostoma lanceolatum)
CAGAAGACGAAATTTTAGATAGCGTTAGGAACCTAAAAACAAACAAAGCA
CCAGGCATAGACAACCTTTTACCAGAGTTCTTTCGTGAGAGCACTTCAAC
ACTTTTGCCTTACCTGAAGTCACTGTTTAATAAGTGTTTTACACTAGGAG
TTATACCACAACAGTGGACAATAGGTATTATACAGCCACTGTTTAAATCT
GGCTGTAAAGATGATGCAGCAAATTACAGAAGCATAACCTTATTATCAGT
GTTTGGTAAAATATTCCTTACAATCTTGGGGAATAGACTTAACAACTGGG
CTCAAGTAGAAGGCAAGTTGGTGGAATCTCAAATGGGTTTCAGAAAAGGA
TATGGTGTGCTTGATAACCTGTTCTGTTTAAATTCTCTGATACAAAAATA
CCTTACAAGGCCACGTGGACGTTTTTACTGTGCATTTGTTGATTTCTCCA
AAGCATTTGATAGTGTAAATAGAGTGTACTTGTGGTGGAAATTGCTACA

Coding sequence (CDS) from alignment at Sc0000147:682878..683376+

>transcript:BL85171_cuf0 ID=transcript:BL85171_cuf0|Name=transcript:BL85171_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=495bp|location=Sequence derived from alignment at Sc0000147:682878..683376+ (Branchiostoma lanceolatum)
GAAGACGAAATTTTAGATAGCGTTAGGAACCTAAAAACAAACAAAGCACC
AGGCATAGACAACCTTTTACCAGAGTTCTTTCGTGAGAGCACTTCAACAC
TTTTGCCTTACCTGAAGTCACTGTTTAATAAGTGTTTTACACTAGGAGTT
ATACCACAACAGTGGACAATAGGTATTATACAGCCACTGTTTAAATCTGG
CTGTAAAGATGATGCAGCAAATTACAGAAGCATAACCTTATTATCAGTGT
TTGGTAAAATATTCCTTACAATCTTGGGGAATAGACTTAACAACTGGGCT
CAAGTAGAAGGCAAGTTGGTGGAATCTCAAATGGGTTTCAGAAAAGGATA
TGGTGTGCTTGATAACCTGTTCTGTTTAAATTCTCTGATACAAAAATACC
TTACAAGGCCACGTGGACGTTTTTACTGTGCATTTGTTGATTTCTCCAAA
GCATTTGATAGTGTAAATAGAGTGTACTTGTGGTGGAAATTGCTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85171gene:BL85171Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85171_cuf0-E1BL85171_cuf0-E1-1564476830-346707Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85171_cuf0transcript:BL85171_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000147genomeSc0000147:682878..683376 +
Properties
Property NameValue
Transcript idBL85171_cuf0
Biotypeprotein_coding