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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85029_cuf0 >transcript:BL85029_cuf0-protein ID=transcript:BL85029_cuf0-protein|Name=transcript:BL85029_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=763bp
YTLSLDKCFSYTLACISVIVILLAGDIHPNPGPVSRKDLNFMHINVNSLV
AGTKMDELSALVVRFKLDVVAISETWLGESVDSVAISLDGFQAPIRRDRN
RHGGGVLIYISDQIAYKRRSDLEPKSVECIWLELFAGCYRVIFSVYYRPP
GQDASTANEFIDLFTDSVFAAGSSNYDAVIITGDFNAKHNAWWAPDPITS
VGSKLFQASTMLNLTQVISEPTCDLSRSPSLIDLLFTDMKNLVKSTTVLS
PLSGCHHCPIITTFNMSLKSPRPYIRTIWEYPKIDHDLLAEFSSDSKWHE
IFYCNAVDDACYKLVDLIFEAKTKCVPHKDILIRPRDKPWMSPRIRSLMR
RRDKLHRNAKVSNSTTLWSAYRNVRNKLVREILLAKSNYNSRLADSLTSS
PCSSKKWWHIVKSFYCSKVSSNIPPLRSGHLYVTDSCEKATMFNNFFTAQ
ASVDDTKASLPQLDFLTDVRFSECFTTPAEIELYVSALDISKACGHDNVD
NRFLKLICPYISDKIAYVFNLSFCHGVFPKAWKRANVVPIFKKGEPDDVS
NYRPVSLLPCLSKILEKIVSKHLYNHLMSQNLLYSLQSGFIRGDSTVNQL
ICITDKIFNALDSNKEVRAVYLDFSRAFDKVWHKGLIFKLQRNGVDGPIL
NWFHSYLSDREQRVVIDGQCSDWSYVGAGVPQGSVLGPLLFLVFINDMVD
GLVTCPFLFADDSSLLDIVEDPNVTADRLNTDLRKISFWSSTWLMNLNPL
KTEEMCFSKKSNP Run BLAST on NCBI mRNA from alignment at Sc0000473:71635..73925+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85029_cuf0 ID=transcript:BL85029_cuf0|Name=transcript:BL85029_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2291bp|location=Sequence derived from alignment at Sc0000473:71635..73925+ (Branchiostoma lanceolatum)
TATACACTTAGCTTAGATAAGTGCTTCTCATATACGCTAGCATGTATCTC
CGTTATTGTGATTCTTCTAGCGGGAGACATCCATCCCAACCCAGGGCCAG
TCTCTCGTAAAGATTTAAATTTTATGCACATCAATGTCAACAGTTTGGTA
GCCGGTACCAAAATGGACGAACTGTCCGCTCTCGTAGTTAGATTTAAGCT
CGATGTTGTCGCCATCTCAGAAACATGGCTGGGCGAGTCTGTTGATTCAG
TTGCTATCTCTCTTGATGGCTTCCAGGCTCCGATACGACGTGATAGAAAC
CGGCACGGTGGTGGTGTCCTTATTTACATATCTGACCAGATCGCATACAA
GAGACGCTCAGATCTGGAGCCCAAATCTGTTGAATGTATCTGGCTGGAAC
TATTTGCAGGATGCTATCGTGTCATATTTTCTGTTTACTACCGCCCACCT
GGCCAGGACGCCAGTACTGCTAATGAATTTATTGACTTATTTACTGACTC
AGTCTTTGCAGCTGGGTCCTCTAATTATGACGCCGTCATAATTACAGGTG
ACTTCAATGCCAAGCACAATGCATGGTGGGCTCCTGACCCAATTACCTCT
GTCGGCTCAAAACTATTTCAAGCATCGACTATGTTAAACCTTACCCAGGT
GATTAGCGAGCCGACATGTGATTTGTCACGTTCTCCTTCTTTGATTGACT
TACTGTTTACTGATATGAAGAATCTTGTTAAATCTACCACAGTTTTGTCT
CCCCTTTCTGGATGCCACCACTGTCCCATAATTACTACTTTTAATATGTC
CTTAAAGTCCCCGCGCCCTTATATCCGCACTATCTGGGAATATCCTAAAA
TCGATCATGACTTATTAGCTGAATTTTCGTCTGATTCCAAATGGCATGAA
ATTTTTTACTGTAACGCTGTTGATGATGCATGTTATAAGCTGGTAGATCT
TATATTTGAAGCCAAAACCAAATGTGTTCCCCATAAGGACATTCTTATAA
GGCCCAGAGATAAACCATGGATGTCTCCCAGGATTAGATCGTTGATGCGT
CGGCGAGACAAGCTACATAGGAATGCTAAAGTTTCGAACAGTACCACACT
GTGGTCTGCATACCGTAATGTCAGAAATAAACTAGTACGCGAAATATTAC
TTGCTAAGTCTAACTACAACAGCCGTCTCGCTGACTCCTTGACGTCTTCT
CCTTGTTCTAGTAAGAAATGGTGGCACATTGTTAAATCTTTCTATTGTAG
CAAAGTGAGTTCTAATATTCCTCCCTTAAGGTCAGGTCACTTGTATGTAA
CTGATTCTTGTGAAAAGGCAACCATGTTCAACAATTTTTTCACTGCTCAG
GCCTCTGTAGATGACACCAAGGCAAGCCTCCCACAACTTGATTTTCTCAC
TGATGTCCGATTTTCAGAATGTTTTACCACACCTGCCGAGATTGAACTCT
ATGTATCCGCTCTAGATATATCCAAAGCGTGTGGTCACGATAATGTTGAT
AATCGCTTTCTTAAACTCATATGCCCTTACATATCTGATAAGATCGCTTA
CGTTTTCAATTTGTCATTTTGCCATGGTGTCTTTCCAAAGGCCTGGAAAC
GGGCAAACGTGGTTCCAATTTTCAAAAAGGGAGAACCAGATGATGTATCT
AATTATCGCCCCGTATCTCTGTTGCCCTGTTTGTCCAAAATTTTAGAAAA
AATTGTATCCAAACATTTGTATAACCATTTGATGTCTCAAAATTTACTAT
ATTCCCTCCAGTCGGGCTTCATCCGCGGAGATTCGACAGTAAATCAACTT
ATTTGCATTACTGATAAAATCTTTAATGCTCTAGATTCCAACAAAGAAGT
CAGAGCGGTTTACTTAGACTTTTCTAGAGCATTTGACAAAGTCTGGCATA
AAGGACTTATTTTCAAGCTGCAGAGAAACGGGGTCGACGGCCCAATCTTA
AATTGGTTCCATAGCTACCTCTCTGACAGAGAGCAAAGAGTTGTTATTGA
TGGTCAATGTTCGGATTGGAGTTATGTTGGCGCAGGTGTACCTCAGGGTT
CAGTTTTAGGGCCTCTCTTATTTCTTGTCTTCATTAATGACATGGTGGAC
GGTCTAGTTACATGCCCTTTTTTATTTGCTGACGATAGTTCATTATTGGA
CATTGTGGAAGATCCTAACGTTACAGCTGATCGACTCAATACTGATCTTA
GGAAGATATCATTTTGGTCTTCAACATGGCTTATGAACCTAAACCCTTTA
AAGACTGAAGAAATGTGTTTTTCTAAGAAATCAAATCCTCC Coding sequence (CDS) from alignment at Sc0000473:71635..73925+ >transcript:BL85029_cuf0 ID=transcript:BL85029_cuf0|Name=transcript:BL85029_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2289bp|location=Sequence derived from alignment at Sc0000473:71635..73925+ (Branchiostoma lanceolatum)
TATACACTTAGCTTAGATAAGTGCTTCTCATATACGCTAGCATGTATCTC
CGTTATTGTGATTCTTCTAGCGGGAGACATCCATCCCAACCCAGGGCCAG
TCTCTCGTAAAGATTTAAATTTTATGCACATCAATGTCAACAGTTTGGTA
GCCGGTACCAAAATGGACGAACTGTCCGCTCTCGTAGTTAGATTTAAGCT
CGATGTTGTCGCCATCTCAGAAACATGGCTGGGCGAGTCTGTTGATTCAG
TTGCTATCTCTCTTGATGGCTTCCAGGCTCCGATACGACGTGATAGAAAC
CGGCACGGTGGTGGTGTCCTTATTTACATATCTGACCAGATCGCATACAA
GAGACGCTCAGATCTGGAGCCCAAATCTGTTGAATGTATCTGGCTGGAAC
TATTTGCAGGATGCTATCGTGTCATATTTTCTGTTTACTACCGCCCACCT
GGCCAGGACGCCAGTACTGCTAATGAATTTATTGACTTATTTACTGACTC
AGTCTTTGCAGCTGGGTCCTCTAATTATGACGCCGTCATAATTACAGGTG
ACTTCAATGCCAAGCACAATGCATGGTGGGCTCCTGACCCAATTACCTCT
GTCGGCTCAAAACTATTTCAAGCATCGACTATGTTAAACCTTACCCAGGT
GATTAGCGAGCCGACATGTGATTTGTCACGTTCTCCTTCTTTGATTGACT
TACTGTTTACTGATATGAAGAATCTTGTTAAATCTACCACAGTTTTGTCT
CCCCTTTCTGGATGCCACCACTGTCCCATAATTACTACTTTTAATATGTC
CTTAAAGTCCCCGCGCCCTTATATCCGCACTATCTGGGAATATCCTAAAA
TCGATCATGACTTATTAGCTGAATTTTCGTCTGATTCCAAATGGCATGAA
ATTTTTTACTGTAACGCTGTTGATGATGCATGTTATAAGCTGGTAGATCT
TATATTTGAAGCCAAAACCAAATGTGTTCCCCATAAGGACATTCTTATAA
GGCCCAGAGATAAACCATGGATGTCTCCCAGGATTAGATCGTTGATGCGT
CGGCGAGACAAGCTACATAGGAATGCTAAAGTTTCGAACAGTACCACACT
GTGGTCTGCATACCGTAATGTCAGAAATAAACTAGTACGCGAAATATTAC
TTGCTAAGTCTAACTACAACAGCCGTCTCGCTGACTCCTTGACGTCTTCT
CCTTGTTCTAGTAAGAAATGGTGGCACATTGTTAAATCTTTCTATTGTAG
CAAAGTGAGTTCTAATATTCCTCCCTTAAGGTCAGGTCACTTGTATGTAA
CTGATTCTTGTGAAAAGGCAACCATGTTCAACAATTTTTTCACTGCTCAG
GCCTCTGTAGATGACACCAAGGCAAGCCTCCCACAACTTGATTTTCTCAC
TGATGTCCGATTTTCAGAATGTTTTACCACACCTGCCGAGATTGAACTCT
ATGTATCCGCTCTAGATATATCCAAAGCGTGTGGTCACGATAATGTTGAT
AATCGCTTTCTTAAACTCATATGCCCTTACATATCTGATAAGATCGCTTA
CGTTTTCAATTTGTCATTTTGCCATGGTGTCTTTCCAAAGGCCTGGAAAC
GGGCAAACGTGGTTCCAATTTTCAAAAAGGGAGAACCAGATGATGTATCT
AATTATCGCCCCGTATCTCTGTTGCCCTGTTTGTCCAAAATTTTAGAAAA
AATTGTATCCAAACATTTGTATAACCATTTGATGTCTCAAAATTTACTAT
ATTCCCTCCAGTCGGGCTTCATCCGCGGAGATTCGACAGTAAATCAACTT
ATTTGCATTACTGATAAAATCTTTAATGCTCTAGATTCCAACAAAGAAGT
CAGAGCGGTTTACTTAGACTTTTCTAGAGCATTTGACAAAGTCTGGCATA
AAGGACTTATTTTCAAGCTGCAGAGAAACGGGGTCGACGGCCCAATCTTA
AATTGGTTCCATAGCTACCTCTCTGACAGAGAGCAAAGAGTTGTTATTGA
TGGTCAATGTTCGGATTGGAGTTATGTTGGCGCAGGTGTACCTCAGGGTT
CAGTTTTAGGGCCTCTCTTATTTCTTGTCTTCATTAATGACATGGTGGAC
GGTCTAGTTACATGCCCTTTTTTATTTGCTGACGATAGTTCATTATTGGA
CATTGTGGAAGATCCTAACGTTACAGCTGATCGACTCAATACTGATCTTA
GGAAGATATCATTTTGGTCTTCAACATGGCTTATGAACCTAAACCCTTTA
AAGACTGAAGAAATGTGTTTTTCTAAGAAATCAAATCCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000473 | genome | Sc0000473:71635..73925 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85029_cuf0 |
| Biotype | protein_coding |
|
