transcript:BL85006_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85006_cuf0
Unique Nametranscript:BL85006_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85006_cuf0

>transcript:BL85006_cuf0-protein ID=transcript:BL85006_cuf0-protein|Name=transcript:BL85006_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=213bp
SEMATTIVVPTTAPVPTTSPFTTVSNTTESPTTDASTPQVPTTTTTKAAT
TVFSTTSTDLPTTDDSSTTKPGTTPKATTILLGSQTTVTGKTDVTTPPVV
NDVSTQHTTGHVHGTDKHPTAPAQSTVDSGLVHAEYTSKFAMEDSTEATT
ESSNKPSVYVSKPALSGAMIGAIVGGVCAGVVVMASLVATAVVLHKRKKL
KRQVLPSDDIRLL
Run BLAST on NCBI

mRNA from alignment at Sc0000002:5728033..5731236+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85006_cuf0 ID=transcript:BL85006_cuf0|Name=transcript:BL85006_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3204bp|location=Sequence derived from alignment at Sc0000002:5728033..5731236+ (Branchiostoma lanceolatum)
TCAGAAATGGCCACTACAATTGTGGTACCAACAACTGCACCAGTTCCTAC
CACATCACCCTTCACAACAGTCTCCAATACGACTGAGTCACCTACAACTG
ACGCCTCTACACCCCAAGTGCCCACCACGACAACGACTAAAGCAGCTACC
ACCGTGTTTTCAACTACGTCGACGGATCTTCCCACAACTGATGACTCCTC
AACGACCAAACCTGGCACCACACCCAAAGCAACCACCATACTATTAGGTA
GTCAAACTACTGTGACAGGGAAAACAGATGTTACCACACCTCCTGTTGTC
AACGACGTGTCCACCCAACACACAACTGGACATGTCCATGGTACTGACAA
ACACCCCACGGCTCCAGCTCAATCTACAGTGGATTCAGGGTTAGTCCACG
CGGAGTACACGTCAAAGTTTGCCATGGAAGACTCAACAGAAGCTACCACT
GAGTCATCAAACAAGCCAAGCGTGTACGTCAGCAAACCGGCTTTATCCGG
CGCAATGATCGGTAAGCATGCAGTTTTCAGGACCGAATATTTCTGGTAGG
AAAGGATAATTAGATATTCGCACAGAAAAAGGAGAGGGCATTAAGACAGT
GCTCTTATTTTGTTGCCAAGGTGCCATCGTTGGTGGGGTCTGTGCTGGAG
TTGTCGTCATGGCGTCACTTGTGGCAACAGCCGTGGTACTTCACAAACGG
TAAGAGAACCTTAAGCTTAATCTACTTTCGAAATCAAACATGTCAACTAG
GATGAATGTATTCTGTAATCTCTATAATGCACTAGAAATGTCATATTCAT
CTAAGATTCAATTGGATGGTCGAAATGTAATCAAAAATTAAAAGAAAAAC
GTCACGTAACGATGGATTTCTTTCTTTGTTTCAGCAGATATGTATACATC
AGTCGTGTAAACCCAAGTGAGGATATCCCCTTACAGCAACAAGAGGCATA
ATGAAATATACTATAAGTTATGGCATGATGCAATACACCTTTACTTGGAA
TGATCTGTTAACGGTGTACGTCAAAATAACATTGTACGAAAGAACCAATA
GAGGCCGGGACGCTAGCACGGGCTAATGTGATATGTACTCTGACATTCAT
GGGCAACAATAAGATGGCTGGCTCTTATATCTAACTAGTTTTGCCAAATT
GTCTCTCCAATGATATGTATATAAAACATTGATGTCCAGACCTTGTTTGC
GGCGGGTTAGGAAAAAAAAAACATTTTCAAGTATTTCAAAAACGTGTTTA
TTTCAAGTTTAGAGTATCTCCTTTGTGTTGTTGAAATCAATAAAAGAATA
TCAAAAAGTTTGCATTCTTCTGTTATAACCTTTGAGGCCGTCCTTGTGAT
TACTTTGTTTACCCCATTTACCAATAGATGAGGTCAGACGTTCTTTATGT
AACGACAAAACAAATAAAACACCGAGGTGTGAAAATACACAGTCTTCACT
TGCATAATTATGTAGCACGAAGTCACTCCCGCAAGGTGCACTATATCTTA
TCGATCTATCCCCAACCCACTTCAGATGGCGTCCTTATCAAAGGTTTGCA
ATATTTTTGTATTACAGAACCACAGTTCGTCTAAACATAAGGCTTAAGAT
ATTTGCACGTTACTCGGCGTGTGTAATACACCTAGGTAGCGGCAGTGCGC
TTCTGTAATCTTTTATGTGTCCCATGACCCCTGAAACCTTTATCCTGGAC
CTTTGACACTGAGATCGAACAACAGTCGACTACAGTAATTAATCTATCGA
TTAAAACAGCAGTCAAAGGCTTTGATAATGACATGCTGGTTAAGTAACAT
AAGGAGATTGAAATAACATTTGTGTCACCCTTGACTTGGAATTCATAATT
GGGATATCAACAAAAGGACAACAATACACACAAAGAGTAAAATGATACAC
TTTTATCCACTACGGAATTCGTTGAGCGCTCGAGCGCGGCGAGGTCGCCA
CCAAAGTGGAATGGGGGTGTATGTAGCTAAAACCTCCAGCCCCCCTCCCC
CGCAAAGATTGCTACGTTTAATACGCCCGTAGTCACAACCGCCGTTGTCT
TTTTTTTCTCCGCAGGAAGAAACTCAAGAGGCAGGTGCTCCCATCTGACG
ACATCCGCTTGTTGTGAGAAGGGGCCAAGTTCAACGGAACCACCGCGATG
TTACAGAGTTTGCAATGGCACGTTGTGCTTACAACAGACTGATAGCTGTA
GATTTGCTGTGCACGTCAAAAGTTGAGTTTGACGGGTTTTTTTCCAAACT
AAACATTAAAAGACTATGGCAGACATGTTCTGTGGATTGCATGTTTGGGC
ATTATCTGCTGTTCAATTCAATTATTTCCTAATTACCTTGTTGTCGACAT
AGATAGATGAATACCTCTTCTAAATCTTTTTCTATTACATTTATGTCAAG
GTCAGCAGATTTGTCTGAACGTTTTGTATAAATCTGTAATAGAAAGTACA
TGTAGTAAATATGTGGTGAACATTGTCTTTTGCATCAAGTCTGTGTGCAT
GATAGATTACTGACTTTATTGGTTTGTGATATGAGTTGACAAATGGGCTA
ACTTAGAATAAGGTCACACTTCTGTCTGGAGGTCACCAAATAAATAACAA
TGGACTGCACTTTGATACGCAAGATAGTTAGAAGCCTGACCCCCCGACCT
AAGACAATGACTGTATCAAATCATCTAAGTTCTGACAAAAGTTACCTAGA
TCAAGCAATACGAATTAACGAAGTTGTTCATTAATAAATTTATATTCTAA
TAAGTTTCGTACATCACTTTATGAATTTCACTGAATTTGGAATGAAGAAA
AAAATAGCATTCATAATCACTTTGAGGACTTCACAAATACGTTTGTAGTC
TCAAGATTTCATGATGATTTTGTAACTTTTTTAAACTTTAACCTCAATTG
CCCTTTCTTTATATACAGTACACAGTGACATTGATACTATTGATGACATT
GATAGATATGTTTAAGAACTCATTCATGCGTACATTTACATAAAACATAA
ACAAGGCAAGGTCTGGCTACATAAACAAAGTCACACAAAGTCTTTTCTTG
CACCATTATAACTCTTGAATTGTAATATTCATCACCTGTGGCGTTATATA
AAGGTTATGAATTAGTCTGCCACTCAAAATGTGTTTACGGCGTGCCGAGC
TACTCGTGACGCAGATCCGACATTTCTTGAATGACTGAAACGCTGGATTA
TAAT

Coding sequence (CDS) from alignment at Sc0000002:5728033..5731236+

>transcript:BL85006_cuf0 ID=transcript:BL85006_cuf0|Name=transcript:BL85006_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1926bp|location=Sequence derived from alignment at Sc0000002:5728033..5731236+ (Branchiostoma lanceolatum)
TCAGAAATGGCCACTACAATTGTGGTACCAACAACTGCACCAGTTCCTAC
CACATCACCCTTCACAACAGTCTCCAATACGACTGAGTCACCTACAACTG
ACGCCTCTACACCCCAAGTGCCCACCACGACAACGACTAAAGCAGCTACC
ACCGTGTTTTCAACTACGTCGACGGATCTTCCCACAACTGATGACTCCTC
AACGACCAAACCTGGCACCACACCCAAAGCAACCACCATACTATTAGGTA
GTCAAACTACTGTGACAGGGAAAACAGATGTTACCACACCTCCTGTTGTC
AACGACGTGTCCACCCAACACACAACTGGACATGTCCATGGTACTGACAA
ACACCCCACGGCTCCAGCTCAATCTACAGTGGATTCAGGGTTAGTCCACG
CGGAGTACACGTCAAAGTTTGCCATGGAAGACTCAACAGAAGCTACCACT
GAGTCATCAAACAAGCCAAGCGTGTACGTCAGCAAACCGGCTTTATCCGG
CGCAATGATCGGTGCCATCGTTGGTGGGGTCTGTGCTGGAGTTGTCGTCA
TGGCGTCACTTGTGGCAACAGCCGTGGTACTTCACAAACGGAAGAAACTC
AAGAGGCAGGTGCTCCCATCTGACGACATCCGCTTGTTGTGATCAGAAAT
GGCCACTACAATTGTGGTACCAACAACTGCACCAGTTCCTACCACATCAC
CCTTCACAACAGTCTCCAATACGACTGAGTCACCTACAACTGACGCCTCT
ACACCCCAAGTGCCCACCACGACAACGACTAAAGCAGCTACCACCGTGTT
TTCAACTACGTCGACGGATCTTCCCACAACTGATGACTCCTCAACGACCA
AACCTGGCACCACACCCAAAGCAACCACCATACTATTAGGTAGTCAAACT
ACTGTGACAGGGAAAACAGATGTTACCACACCTCCTGTTGTCAACGACGT
GTCCACCCAACACACAACTGGACATGTCCATGGTACTGACAAACACCCCA
CGGCTCCAGCTCAATCTACAGTGGATTCAGGGTTAGTCCACGCGGAGTAC
ACGTCAAAGTTTGCCATGGAAGACTCAACAGAAGCTACCACTGAGTCATC
AAACAAGCCAAGCGTGTACGTCAGCAAACCGGCTTTATCCGGCGCAATGA
TCGGTGCCATCGTTGGTGGGGTCTGTGCTGGAGTTGTCGTCATGGCGTCA
CTTGTGGCAACAGCCGTGGTACTTCACAAACGGAAGAAACTCAAGAGGCA
GGTGCTCCCATCTGACGACATCCGCTTGTTGTGATCAGAAATGGCCACTA
CAATTGTGGTACCAACAACTGCACCAGTTCCTACCACATCACCCTTCACA
ACAGTCTCCAATACGACTGAGTCACCTACAACTGACGCCTCTACACCCCA
AGTGCCCACCACGACAACGACTAAAGCAGCTACCACCGTGTTTTCAACTA
CGTCGACGGATCTTCCCACAACTGATGACTCCTCAACGACCAAACCTGGC
ACCACACCCAAAGCAACCACCATACTATTAGGTAGTCAAACTACTGTGAC
AGGGAAAACAGATGTTACCACACCTCCTGTTGTCAACGACGTGTCCACCC
AACACACAACTGGACATGTCCATGGTACTGACAAACACCCCACGGCTCCA
GCTCAATCTACAGTGGATTCAGGGTTAGTCCACGCGGAGTACACGTCAAA
GTTTGCCATGGAAGACTCAACAGAAGCTACCACTGAGTCATCAAACAAGC
CAAGCGTGTACGTCAGCAAACCGGCTTTATCCGGCGCAATGATCGGTGCC
ATCGTTGGTGGGGTCTGTGCTGGAGTTGTCGTCATGGCGTCACTTGTGGC
AACAGCCGTGGTACTTCACAAACGGAAGAAACTCAAGAGGCAGGTGCTCC
CATCTGACGACATCCGCTTGTTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85006gene:BL85006Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85006_cuf0-E1BL85006_cuf0-E1-1564476830-36982Branchiostoma lanceolatumexon
BL85006_cuf0-E2BL85006_cuf0-E2-1564476830-36984Branchiostoma lanceolatumexon
BL85006_cuf0-E3BL85006_cuf0-E3-1564476830-36987Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85006_cuf0transcript:BL85006_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:5728033..5731236 +
Properties
Property NameValue
Transcript idBL85006_cuf0
Biotypeprotein_coding