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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84984_cuf0 >transcript:BL84984_cuf0-protein ID=transcript:BL84984_cuf0-protein|Name=transcript:BL84984_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=476bp
MEEAAEDLHEQTEEKRPCPETDHGGTRKQSRKTHSADRPHRCRECEFSAS
KMSAMKRHVRTSHAAGKGKQTKKDHLVKHLRATHGGERPFQCDVCDYSAA
RKVHMKLHIMAKHSNYRPHNCAKCDYSAVSKSQLKAHMMSHTGEKPYSCE
RCAFATAQKSKLKRHMAIHTGEKPYRCDVCGYSAVRKFALKSHMATHTGG
KPYRCDVCGYSTPQMSNLKRHIATHTGEKPYRCDVCGYSTVRKYDLKSHI
ATHTGEKPYKCEVCSYSAVQKSALKRHMATHTGEKPYRCDVCGYSTTKMS
HLKQHIATHTGEKPYSCDVCGYSTVRKYDLKSHMATHTGEKPYRCDVCGY
STLRMYDLKRHIATHTGEKPYRCDECGYSTARMSHLKRHIATHTGEKPYK
CVVCSYSAVQKSALKRHMATHTGEKPFKCEVCSYSAGQKSQLKNHMTSHT
GEKPIACVTPKGGYTGFTTDTVVHTV Run BLAST on NCBI mRNA from alignment at xpSc0039854:3132..7891+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84984_cuf0 ID=transcript:BL84984_cuf0|Name=transcript:BL84984_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4760bp|location=Sequence derived from alignment at xpSc0039854:3132..7891+ (Branchiostoma lanceolatum)
GCTTTCCCACAACAAGTTTACCCAGCGCTTCCTTTCGCAAGAATCGGGTC
CCTAGTGGCTGTATTGTGTGGCTATCTCTAGCTAGAAGGCACAGTTTAGG
ACACCACACGTGGGGCGTCTTCATCAACGAGCCAGGTAAAACTCCTTACA
AGTGAGTGGGTCAGTTCTATCTCGGGAACATGTGTTGCGATGACACCTTG
GAGTGTTGATTACTGCATCAATGGTCCAAGTAAGACATATAAGGGTCGGT
GGTGTGTTTTCTGAAGGGCTTGCGCAATCTGTAGGTGAGGCGCCTCACAT
GGAACTTGGGCGTGTTGTAGATTGAACAGGGGCCGAGTGAGGAACCTATA
TGTGTTTTACAGACCGAAAGGTGAATAAGTTGTATCTCCTTTAATTACTA
GACCGGCTAAGGTACCTTACATGTGAGGTACGTATGTTCCGTTTGACTAG
GTAAACTACCGAGGTAGGTGTGTTTCGTACGTAAGCGGACGCCCTCCATG
TCCATAGTTGATGCTGTGGTGGAATCTTTGCTTTCCGATTCAAATCCAAG
CTTTGACTGTTCAAGGCACATATACCATGTGGACGCTGTGTTGCGTGTCA
ACATTTGGACAATTAAGGGCCATTGAGATTTTTGATGTAATAAATGGTTT
ATTGGTCCGAAATTACCCATGCAGTGGCAATCCATGTAGGAAATGGCAGC
CAATGCTGAATTGATGCAGGGTTTACAATTCGGCGCCAGCAGGTGACCTC
AATACGACCTTCCCCAACCGTAGTCAGGTACCCATTCACACCTGGTTTGA
GTGAGGAAATTCGTGTCAAGTGACTTTCCCAAGGGCACAACATCGGGGCA
TACCGGTGGTTTCGAACCCGGGGCCTCTCGGTTCTGGGCGAAACGCCCTA
CCGTTTGCACCACACGATGCCATGTAGGAAATGGCATGAAAGCGGCTAGC
CTCAGTTGCAGACTCCATGCGGCTGTTTCCTTTTTTTTTTACTTTAAAGG
ATTTTAGGCATTGTGATGCAATCAAAACCACATGTGAACGAGCATGGCCC
TTTTCATAACACTCCCCCACCCGTTTCTAGAGATGGTTCCTTCCACATGG
AGACGTATGATGTTGATGGAAGGTACCATTGTTGGAGGGGTAAGGGTGGT
CAAGCCAGGCACTGCCTTTTTATGGTGTTCCAAGCAGTGTTTGGGTGTAT
AATTAAGGGTCAATGACCCGCCTATTGCTCGTTTAATATGCTGCCATAAG
ACCTGGTCATTTACTATAGAATAACCCAGTGAGGAACGCGAAGGGAGCAC
AGAAGAGAAACATGTTGTTTTTGCTACGTTTCTTCCTCTTCTTCTTCTTC
TCCTCCAAACAAATTAGGTCAATGAGGGCTGTAACCATGGTTACTGGGAA
AATGACAGACACAGGGGTGTTGGATTGCATTTTGTAACAAATCGCCAGGA
CAGAGCTGGAGGGCTGGTCACCACGTAAAATAAACATAGCAGCAGCTAGT
AAAGCTAGACCACGTGAAAGTAAACATTAATATGTATTTTCTTGCAAACG
TTTTCTTTCTAGTTAACGTAATTCTCAATTGGCCAATCAAAACTGACCCG
TATAAGAGATACGAATTCCTGTATGACGCATAGATCAACCTATACTATAC
ATGTAAATACATTTGTTCGATGTGTAAAGAATTAAGAAATGCATTTGTTT
TGTCCAGAAGGTCACAGATTTCATGTGGAAACCAAACGTCCCAGAGACAA
TATTTCGAAACCATTTTTTTTCAAATCTACTCTATTCCTTCCCCTCTGTT
GGGATATCTCCTCGTGAGATTAGTCAGAGAAGTGTCACTCCTTCTGATTG
GTCAATGTCGTGTATATCTCTCTATCTCTCTCTCTGATTGGTTAACATCA
TCTGGCCATATACGGGTTGTGAGCGATTCCACTTGCAACGGGGCCGCCAA
CTAGTCGCGGGTCCAGTGAGATAGGGGCTCCTCCATGCGTGCCACTTACG
CAGCGTACCATCGTGTACACAACCAGTGTTGGGGGACATTTCCTGGTGCA
GTGTAACATAGAGCTGAAAGTAGATTAAAACTTGTACATGAAGATGTGTT
TGTAAGTGTCCCTGAGTGGGAGTGGGAGATACTTCAGATATTTCATGTTT
TGCTTTTCCTTTGGCAAACATGTTACACAGTAAGGTTCTTGTGTTGTGGC
AAACATGTTACACAATAAGGTTCTTGTGTGGTGGCAAACATGTTAGACTG
TAAGATTCTTGTGTTGTGGCAAACATGTTTCACAGCAAGGTTCTTGTGTT
GTGGCAAACGTGTTACACAGTAAGGTTCTTGCTTGTGTGGTGGCAAACAC
TCGTTACACAGTAAGGTTCTTGTGTTGTGGCAAACATGTTACACAGTAAG
GTTCTTGTGTGGTGGCAAACATGTTAGACTGTAAGATTCTTGTGTTGTGG
CAAACATGTTTCACAGCAAGGTTCTTGTGTTGTGGCAAACGTGTTACACA
GCAAGGTTCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TTACGTCTAAGTTTCTTTCCTCCTGTTAGATGGAAGAAGCAGCAGAAGAT
CTGCATGAACAGACAGAAGAGAAACGGCCTTGTCCAGAAACAGACCATGG
AGGGACAAGGAAACAGAGCCGCAAGACTCACAGTGCTGACAGACCACATC
GATGCCGGGAATGCGAGTTCTCCGCATCCAAGATGTCCGCCATGAAACGG
CACGTTAGGACGTCGCACGCCGCAGGTAAAGGTAAACAAACGAAGAAAGA
TCACCTTGTGAAGCATCTCAGGGCAACTCACGGTGGTGAGAGACCTTTTC
AGTGCGATGTCTGCGACTATTCCGCTGCACGAAAGGTTCACATGAAACTT
CACATCATGGCCAAACACAGTAACTACCGACCGCACAACTGCGCAAAGTG
CGACTACTCTGCAGTCAGCAAAAGCCAGTTAAAGGCTCATATGATGTCAC
ACACTGGTGAGAAGCCTTACAGCTGTGAGCGGTGTGCTTTTGCCACTGCC
CAGAAGAGCAAATTGAAGCGTCACATGGCCATCCACACTGGGGAGAAACC
TTACAGGTGTGATGTATGTGGTTATTCTGCAGTACGAAAGTTTGCTTTGA
AGAGTCACATGGCTACCCACACTGGGGGGAAACCTTACAGGTGTGATGTA
TGTGGTTATTCTACACCACAGATGTCTAATTTGAAGCGTCACATCGCTAC
CCACACTGGGGAGAAACCTTACAGGTGTGATGTATGTGGTTATTCTACAG
TACGAAAGTATGATTTGAAGAGTCACATCGCTACCCACACTGGAGAGAAA
CCTTACAAGTGTGAGGTTTGCAGTTATTCTGCAGTACAAAAGTCTGCTCT
GAAGCGTCACATGGCCACCCACACTGGGGAGAAACCTTACAGGTGTGATG
TATGTGGTTATTCTACAACAAAAATGTCTCATTTGAAGCAGCACATCGCT
ACCCACACTGGAGAGAAACCTTACAGTTGTGATGTATGTGGTTATTCTAC
AGTACGAAAGTATGATTTGAAGAGTCACATGGCCACCCACACTGGAGAGA
AACCTTACAGGTGTGATGTATGCGGTTATTCTACATTACGAATGTATGAT
TTGAAGCGTCACATCGCTACCCACACTGGGGAGAAACCTTACAGGTGTGA
TGAATGCGGTTATTCTACAGCACGAATGTCTCATTTGAAGCGTCACATCG
CCACCCACACTGGGGAGAAACCTTACAAGTGTGTGGTTTGCAGTTATTCT
GCAGTACAAAAGTCTGCTTTGAAGCGTCACATGGCCACCCACACTGGGGA
GAAACCTTTCAAGTGTGAGGTTTGCAGCTATTCTGCAGGTCAAAAGTCTC
AATTAAAGAATCACATGACCAGCCACACCGGGGAGAAACCTATCGCGTGT
GTTACGCCGAAGGGTGGTTATACCGGCTTTACCACAGATACAGTTGTCCA
CACAGTCTAATGTTAGACCATAAATTTTTGACGCTTGTAGCTGTTTGTTT
TTTCCCTTTCCATGGAAGCAGACACAATCAAAGGACACAGAGTCCATGAG
ACAAACTGGAAACGTCAGATTATGTCATACCGCCTAAAGATTGTTATTCT
TGGAATACGCGTACTTTCTGTTAGTGTTCTTCATTTCCTGTATTTGCTTT
GATACAAGTTTTATTCAAATCATTGGAGAAAGAAATGAATAGAAATTATT
ATATAAGGATGGAAATGAGGTGATCCTGAAGGTGAAAAGAATGAGCTAAG
ACATGCACACATCAAAGTTATTACTTTGTATATTTAATTATTTAGTTACG
TCGTTACTTTCATTAATTTGATACGCTTTTTCAGTCATATTTTATCTATG
TAACGTTTTTTTTCTCCAGAAATTTGCTTAAGTTCGTCATAGTCTCTGTC
TAATCTTTTTTAGCTTTGTTGTGGCGCTCTGAAATAATGCATACTGTGTT
TCATGTTTTTCCGGTAAGCACACTTTTTTGGGTGCCTTAATCTATCTCAT
TTTCATGATACTGGTACCGAGTTGTTCTGAAATATGCGCATCTTAAAAAT
AACGAGCTATTCACATGTATTATGTCATCTAAAAACTACAATATAATTGG
AAAACTATGTGAATTTGTGTAGAAATGTTTCAAGAAGAGAGAAGAGACTG
TAGATTTAGATGGAATATATCACAATGTTCCTTTCCTTTAAAATTTACTT
TATGTTACCT Coding sequence (CDS) from alignment at xpSc0039854:3132..7891+ >transcript:BL84984_cuf0 ID=transcript:BL84984_cuf0|Name=transcript:BL84984_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1431bp|location=Sequence derived from alignment at xpSc0039854:3132..7891+ (Branchiostoma lanceolatum)
ATGGAAGAAGCAGCAGAAGATCTGCATGAACAGACAGAAGAGAAACGGCC
TTGTCCAGAAACAGACCATGGAGGGACAAGGAAACAGAGCCGCAAGACTC
ACAGTGCTGACAGACCACATCGATGCCGGGAATGCGAGTTCTCCGCATCC
AAGATGTCCGCCATGAAACGGCACGTTAGGACGTCGCACGCCGCAGGTAA
AGGTAAACAAACGAAGAAAGATCACCTTGTGAAGCATCTCAGGGCAACTC
ACGGTGGTGAGAGACCTTTTCAGTGCGATGTCTGCGACTATTCCGCTGCA
CGAAAGGTTCACATGAAACTTCACATCATGGCCAAACACAGTAACTACCG
ACCGCACAACTGCGCAAAGTGCGACTACTCTGCAGTCAGCAAAAGCCAGT
TAAAGGCTCATATGATGTCACACACTGGTGAGAAGCCTTACAGCTGTGAG
CGGTGTGCTTTTGCCACTGCCCAGAAGAGCAAATTGAAGCGTCACATGGC
CATCCACACTGGGGAGAAACCTTACAGGTGTGATGTATGTGGTTATTCTG
CAGTACGAAAGTTTGCTTTGAAGAGTCACATGGCTACCCACACTGGGGGG
AAACCTTACAGGTGTGATGTATGTGGTTATTCTACACCACAGATGTCTAA
TTTGAAGCGTCACATCGCTACCCACACTGGGGAGAAACCTTACAGGTGTG
ATGTATGTGGTTATTCTACAGTACGAAAGTATGATTTGAAGAGTCACATC
GCTACCCACACTGGAGAGAAACCTTACAAGTGTGAGGTTTGCAGTTATTC
TGCAGTACAAAAGTCTGCTCTGAAGCGTCACATGGCCACCCACACTGGGG
AGAAACCTTACAGGTGTGATGTATGTGGTTATTCTACAACAAAAATGTCT
CATTTGAAGCAGCACATCGCTACCCACACTGGAGAGAAACCTTACAGTTG
TGATGTATGTGGTTATTCTACAGTACGAAAGTATGATTTGAAGAGTCACA
TGGCCACCCACACTGGAGAGAAACCTTACAGGTGTGATGTATGCGGTTAT
TCTACATTACGAATGTATGATTTGAAGCGTCACATCGCTACCCACACTGG
GGAGAAACCTTACAGGTGTGATGAATGCGGTTATTCTACAGCACGAATGT
CTCATTTGAAGCGTCACATCGCCACCCACACTGGGGAGAAACCTTACAAG
TGTGTGGTTTGCAGTTATTCTGCAGTACAAAAGTCTGCTTTGAAGCGTCA
CATGGCCACCCACACTGGGGAGAAACCTTTCAAGTGTGAGGTTTGCAGCT
ATTCTGCAGGTCAAAAGTCTCAATTAAAGAATCACATGACCAGCCACACC
GGGGAGAAACCTATCGCGTGTGTTACGCCGAAGGGTGGTTATACCGGCTT
TACCACAGATACAGTTGTCCACACAGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| xpSc0039854 | genome | xpSc0039854:3132..7891 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84984_cuf0 |
| Biotype | protein_coding |
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