|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84958_cuf4 >transcript:BL84958_cuf4-protein ID=transcript:BL84958_cuf4-protein|Name=transcript:BL84958_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=324bp
MSFVDLKAAEYMKDHLDVTNCADVLMYADMLGDCGLIEASGKYIAIRCGL
VYVKGYIYAIGGDDAKQTAEKYDPCHDEWTPIPSIPDSLTSKLCAVALND
SIYVISRKGCYSFSPTENTWDKISDMIKPPKRPQAVTYGGNIYCKDCEDD
SEYFGSIAVEVYNPTKDEWKLSGNIYFSFDKSTLMKYEGSMYLLGYEDDH
NESLMLDMEDDTMSIYQYQPKTGCWLLLKDMGSLVHPMAHWLESGSKIDC
LTARMIPTCLGDADAYEEMDVPSDDEEQIDFRSSESSGSGVSDNSDSGGL
SDQEDSDEDNSDEERQSESNNEDI Run BLAST on NCBI mRNA from alignment at Sc0000153:278414..282715- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84958_cuf4 ID=transcript:BL84958_cuf4|Name=transcript:BL84958_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4302bp|location=Sequence derived from alignment at Sc0000153:278414..282715- (Branchiostoma lanceolatum)
CATGTTTGTTGCATTTAGATGAGTTTTGTAGACCTTAAAGCAGCAGAATA
CATGAAGGACCATCTGGATGTAACCAACTGCGCAGATGTGTTGATGTATG
CTGACATGCTTGGGGACTGTGGTCTAATAGAAGCCAGTGGGAAGTACATT
GCAATCAGGTCAGTCTGATAGATGTTACTTACATTATAAGACAAATTATA
TTGCCGAGGATGTTCCCATCAATAATTTTGTCGGGTAGTACTATTGACAG
GAGTCTCCTTTTGTTAAGATTTTTTGGTTATATCTATCGACATAATGTTC
CTGGAAATAAAGTTGTTTTTTTTTTCACTATCAAGATGACATCCATGGAC
CGGTCAGCACTAACCCTAACGCCTTATATTACTCTAAGTATGGTAATGTA
ATATGGTTCAGAAAAGACATTCCTGAGCAAGGCTAATTGACTATTGAAAG
GATTTTTAGAATAAGGATCCATCCCTACCTAGATTAAAACCCAGGTCTCC
AAATTGGCCGACGTGAGCTATTACAGCATATCATCGATTGGAATTTAATG
ATTCATTCCAATACCTGTGCACTCAACAATAACAATAACACATTAATTCG
CACTATTGACAGGAATATATAATGGTCACGGCTAATTTATATTCATTTGT
CTGTTTTTATCAGCACTAACTTTTTAAAAATGCATTAACAATGTGTATAC
CTTATTATGTTTGAATCAACCCATTTAACTTGTACATGTAACTTTCTCAG
TTTCGACCAGGTAGCTCTACAACCCTCCTTTCTCCAGTTGCCTCTGCCCC
TGCTCCAGTCACTGCTCAACAGGGATGATCTAATGACCCAATCAGAAGAA
AACGTTGTGCAAGCTGCTCTAAGATGGATTGAATTTGACCAGAAAGAACG
CTTGCAACACCTTCATGTCCTTTGCGCATGCTTCCGCCATTCCTTCATTA
GTTCAAGCCAACTTGTTGATGTCGAGAGTAAGTGCCTGTCAACAGACTGC
AAGTTGGTTTATAGTGAAAGCACAACGCAGCGTCTGGGACAGACGCGAAC
GGAAATGCAGATTTTCCCAAGACTATTAAGACAAGGTTTCAAGGCTTCGG
AACATGGTTTCATGCACGCACGCAGGCTGTGTGCACCTTGCTATGACCCT
TCCACAGGTGGAGTGTACGCAATCAATATGCCTCGCTGTCTACGTTCGGA
TACATGTAGATTTTCTGTGACAGCCACTCCTGATGATGAGTTGTACCTGG
CAGCAGGTCTTGGAACCAGGATTGGTCAGGAGCCATTTTACCAGTACGAC
CACCTGTTGAACACATGGGAGTCAAGATGTCCGATGACTTCACGCAGAGT
CGGGTATATCTTTCTCTTGCAAGCTTCTGCTTTCTGGCCTCATGGCATCT
ATTTAAAAACAAATATGCTTTTAGTCCTTTTAGGTAATGAGTTGCCTGAG
TTCTTAAGATGTCTTAGGAAAAAATGTACGGGTCAATGCCGCATGGATGA
GTGATACACAGTTGGATACTCCACATGTAGGTTTATGTTTCTGTAAACAT
TTCCTGTATCTGTCTTCCCCAGGTGCGGTCTGGTGTATGTAAAGGGGTAC
ATCTACGCCATTGGTGGCGATGACGCTAAGCAAACAGCAGAGAAGTACGA
CCCCTGCCATGATGAGTGGACGCCCATACCATCCATACCTGATTCCTTGA
CCTCGAAACTTTGTGCTGTCGCTCTAAATGATAGCATATATGTCATAAGT
AGGAAAGGCTGCTACAGCTTCAGTCCCACCGAGAACACGTGGGACAAGAT
TTCGGACATGATTAAACCACCTAAGCGTCCTCAGGCTGTCACTTATGGAG
GAAACATCTACTGTAAAGACTGTGAGGATGACTCTGAATACTTTGGATCT
ATTGCTGTAGAGGTGTACAACCCTACAAAAGATGAGTGGAAGTTGTCAGG
GAATATTTATTTTTCCTTCGACAAATCAACCCTGATGAAATATGAAGGGA
GTATGTACCTCCTTGGATACGAGGATGATCACAACGAGTCGCTTATGTTG
GACATGGAGGATGATACTATGTCCATTTACCAGTACCAGCCCAAGACAGG
CTGTTGGCTTCTTCTGAAAGATATGGGAAGCCTGGTTCACCCAATGGCAC
ATTGGTTGGAATCCGGGAGTAAGATAGATTGCCTGACAGCAAGAATGATC
CCAACGTGCCTTGGAGATGCAGATGCATACGAGGAAATGGACGTACCTTC
TGATGATGAAGAGCAGATCGACTTCCGTTCCTCAGAGTCATCCGGAAGTG
GGGTCTCAGACAACAGTGACAGTGGCGGCCTATCGGACCAAGAGGACAGT
GATGAGGACAATTCTGATGAAGAGAGACAGAGTGAAAGTAATAATGAAGA
CATCTGAGATACTAGAACATCATGCACACGTGGAATATGAACTGATCACG
AATATTTCAGATACATGACCGAAACCATTAACTTGTGTTGTAGTCTCATC
ATTGCATGAAGATGCATTGAGCTTTGATGTGATATACTGCATTTACTTAA
ATTTTCATGAGTCTTGTTTGTAGTAATTTGTTACTAATACCTAAACATTA
TAACAAAACAGCCAAAATGTTTTTAATGATGGCCAATATGCTTAAACATA
CATTTTTAGGAAACCCAAGCAAAATTAGGGTCCGAAATATCGTATTTTGA
AAGTCAATTTATTTAGTCATATCTATACATGATTAGTTCAAATCATACTG
TCACAATGTAGAGCAACGTCCATGATGCAAAAATATGACGTTATTGTGAC
TCATGGCCAGAGTTTTTGTATGCTCGCGAAACTAAGGGGATCATCATACG
GCACGATTTTGCGCGTTTAAAAATCCTTAAAGTGTGTAGTTAGTACGCAA
ATGTGCTAAACAATGTTGCATGTAGTAAACGTCACTACCATAAAGATTTC
AGCATTTTTTTTCATTTCCTTTTTCTGGCCCTCATATTACTGTGGTTTCC
CAAGTTTATGATCAGTATAGCGTCAGTTGATTGATTTTAAGTAATATGTT
CTTTGGTATTTAATGTTCTTAACATACATGTGTGCACCAAGTTTACTTAA
ACGAGGACAGTAAGTTCTTAATGCCTCTTACTGACATCCCTAAAAAGGAT
CGTTCCTAACATGTTATGCAAACATTTCTGATATTCTTTTTGTACATGTT
AACCCCCAGATATAAGAATCAAGTCAGAGGACACCGAATGACTATTTTTG
CCCATCATCTCTGATTATCCACTTTTTAAAAAAAGAGAACCAGGTCTAGA
TTATTATTTAGTTTTGCTAACGGGCCCAATATCAACGACTTGTAAGTCAT
CATTAGAAAACATCTTATTTCTTACTTGCCTTACATTTATCTGAAAGTGT
CCTTTACAATACTTTAGAAATGATTCTGAACGTTTTGTAGTTTCAGCTTT
ACTTCACTTGACTCGGAGTTGTAGTTTGTTGTTTATAACGCAAGTTTAGA
AGTCAATTAAATTGAATTGTCAGTAAAATGTAGCTTAGATTCACTGTATT
CTGTTCCATTGGCAGCTGTTTGCATAGATTTTTTTGTGATAGATTTAAAT
GAAAGTACAATAATGGAAGTATGGACCTTTAGAACACTTCAAATGCTAAT
TGTATATATTGTTTAGTCACTTTTACACGAATTAACAGAGTCAACGGTTT
TTGAAACACAAGGAGATAAGAATTGCATTGAATTGTACATGTCATTTATA
TGTACAAAAGTAGCTGAGTTCACTGCACTGTAGCCTTCGTTGCAGGCTCT
GAACCGGCTTTTTGGGGGGCTAAATAATACACTTTTTGCAGCCAGCCCGT
AACTATCAGCCAACCCTGTAACTATCAGCCGGCTGATAGTTACAGGGTTG
GCTGATAGTTACGGGCTGGCTTCAAAAAGTGTATTATCTAGCCCCCCAAA
AAGCCGGTTCAGAACCTGCAACGGAGGCTAACTGCACTGTATCCTGTTTC
ATTAGCAGTTATTTGCGTAGATTGGACTTAATTTAACATTACAGTACAGT
AGCAGAGTAACAGTGAAAAGTGTGACAAAGGTAGATTGCTATTTTGTGGA
GACTTAAATGTTAATCATCTCGGATGTACTTTAATGTTACATCTGTAATA
TATTTTCACACATTTTGATGTCCCACTAGATTTCAACCATTTATTAACAG
AGTAAGCAATGGAAAGTTCAAGCTCTAACTAACCATACATTTCACTATTT
TCAAGCAAATTTGTAACATTTTTATATTAAAGATTTGGTTGTTGTTGAAG
AA Coding sequence (CDS) from alignment at Sc0000153:278414..282715- >transcript:BL84958_cuf4 ID=transcript:BL84958_cuf4|Name=transcript:BL84958_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1950bp|location=Sequence derived from alignment at Sc0000153:278414..282715- (Branchiostoma lanceolatum)
ATGAGTTTTGTAGACCTTAAAGCAGCAGAATACATGAAGGACCATCTGGA
TGTAACCAACTGCGCAGATGTGTTGATGTATGCTGACATGCTTGGGGACT
GTGGTCTAATAGAAGCCAGTGGGAAGTACATTGCAATCAGGTGCGGTCTG
GTGTATGTAAAGGGGTACATCTACGCCATTGGTGGCGATGACGCTAAGCA
AACAGCAGAGAAGTACGACCCCTGCCATGATGAGTGGACGCCCATACCAT
CCATACCTGATTCCTTGACCTCGAAACTTTGTGCTGTCGCTCTAAATGAT
AGCATATATGTCATAAGTAGGAAAGGCTGCTACAGCTTCAGTCCCACCGA
GAACACGTGGGACAAGATTTCGGACATGATTAAACCACCTAAGCGTCCTC
AGGCTGTCACTTATGGAGGAAACATCTACTGTAAAGACTGTGAGGATGAC
TCTGAATACTTTGGATCTATTGCTGTAGAGGTGTACAACCCTACAAAAGA
TGAGTGGAAGTTGTCAGGGAATATTTATTTTTCCTTCGACAAATCAACCC
TGATGAAATATGAAGGGAGTATGTACCTCCTTGGATACGAGGATGATCAC
AACGAGTCGCTTATGTTGGACATGGAGGATGATACTATGTCCATTTACCA
GTACCAGCCCAAGACAGGCTGTTGGCTTCTTCTGAAAGATATGGGAAGCC
TGGTTCACCCAATGGCACATTGGTTGGAATCCGGGAGTAAGATAGATTGC
CTGACAGCAAGAATGATCCCAACGTGCCTTGGAGATGCAGATGCATACGA
GGAAATGGACGTACCTTCTGATGATGAAGAGCAGATCGACTTCCGTTCCT
CAGAGTCATCCGGAAGTGGGGTCTCAGACAACAGTGACAGTGGCGGCCTA
TCGGACCAAGAGGACAGTGATGAGGACAATTCTGATGAAGAGAGACAGAG
TGAAAGTAATAATGAAGACATCTGAATGAGTTTTGTAGACCTTAAAGCAG
CAGAATACATGAAGGACCATCTGGATGTAACCAACTGCGCAGATGTGTTG
ATGTATGCTGACATGCTTGGGGACTGTGGTCTAATAGAAGCCAGTGGGAA
GTACATTGCAATCAGGTGCGGTCTGGTGTATGTAAAGGGGTACATCTACG
CCATTGGTGGCGATGACGCTAAGCAAACAGCAGAGAAGTACGACCCCTGC
CATGATGAGTGGACGCCCATACCATCCATACCTGATTCCTTGACCTCGAA
ACTTTGTGCTGTCGCTCTAAATGATAGCATATATGTCATAAGTAGGAAAG
GCTGCTACAGCTTCAGTCCCACCGAGAACACGTGGGACAAGATTTCGGAC
ATGATTAAACCACCTAAGCGTCCTCAGGCTGTCACTTATGGAGGAAACAT
CTACTGTAAAGACTGTGAGGATGACTCTGAATACTTTGGATCTATTGCTG
TAGAGGTGTACAACCCTACAAAAGATGAGTGGAAGTTGTCAGGGAATATT
TATTTTTCCTTCGACAAATCAACCCTGATGAAATATGAAGGGAGTATGTA
CCTCCTTGGATACGAGGATGATCACAACGAGTCGCTTATGTTGGACATGG
AGGATGATACTATGTCCATTTACCAGTACCAGCCCAAGACAGGCTGTTGG
CTTCTTCTGAAAGATATGGGAAGCCTGGTTCACCCAATGGCACATTGGTT
GGAATCCGGGAGTAAGATAGATTGCCTGACAGCAAGAATGATCCCAACGT
GCCTTGGAGATGCAGATGCATACGAGGAAATGGACGTACCTTCTGATGAT
GAAGAGCAGATCGACTTCCGTTCCTCAGAGTCATCCGGAAGTGGGGTCTC
AGACAACAGTGACAGTGGCGGCCTATCGGACCAAGAGGACAGTGATGAGG
ACAATTCTGATGAAGAGAGACAGAGTGAAAGTAATAATGAAGACATCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000153 | genome | Sc0000153:278414..282715 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84958_cuf4 |
| Biotype | protein_coding |
|
