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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84885_cuf0 >transcript:BL84885_cuf0-protein ID=transcript:BL84885_cuf0-protein|Name=transcript:BL84885_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=162bp
VHSFAEYSGTFYARFVKIHVVTWHEHIAMRAEIVCDDGCWIGREPPWVIE
SSGTAEEKDGVKCEAANVLDPVAGLYWSPLVDVKTHFNRWYIVFDFKACY
TLTRIRLVNCGDTTHDVKSFILQKAACTKPYHWGDVLEVAKVKPGSKKPQ
EFGCFSATARYW Run BLAST on NCBI mRNA from alignment at Sc0000058:261044..267724+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84885_cuf0 ID=transcript:BL84885_cuf0|Name=transcript:BL84885_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6681bp|location=Sequence derived from alignment at Sc0000058:261044..267724+ (Branchiostoma lanceolatum)
GTGCACTCCTTCGCCGAGTACAGCGGCACCTTCTACGCACGGTTTGTGAA
GATCCACGTGGTCACCTGGCACGAGCACATCGCAATGCGAGCGGAGATCG
TGTGTGACGATGGTCAGTAATGCATTCTTTACTATGGGGGGATAATGCAA
GTAATCTTTGAGCAAAGGTTGAATGAGGAAAACGATACCTTCGAATAATT
TTGACTAGAAGGCGCAGAATCGGTTGTTACATGTATAGATCTGAAAGATA
CAAAAACAGTTCAACTTACGTATTAGATACATATTCACCAAGTATCTTTA
TATAGGATATACGTAGTCAATACTGTTGAAAACTATGCTAATGTGGAATT
GAATTGACTACCTCCGCTCCCTTTTTTGTTTTATGTTATGAAGGGCATCA
GACGATTCATTTCATGCATTTGATTGAAACAATACCTTTTATATGCAACT
TACGTGTCACTGAATAAAAAGACTCTTTTTACACAGTCAACCAAGAGATT
TATTCCACCGACGTTTCTGGCAATTCTGACTGGTTCACATAGTAATGCAG
CACAGCTGTCGATGCTTATACATAATAATGAGATGATTGTACATATGCAA
AGTATTTACATATGTACAATCACAGGGAATGACATCACTATGCGGTCCCG
TACAGAAGTGTAACACATACACAACTATCGATCAAAAAACATTGCCTTGA
AGAAGGTGACATATGGTCACCGAAACGTCGGTGGAATAAATCTCTTGGTT
GTGTAAGAAGAGTCCTTTTTTCAGTGACTTACCAACCTGGTGAAACTATT
CACGAACGTACGTGTCATTCTAACACGAAATGTCGCTTTCGTTTCCAGGC
TGTTGGATCGGCCGTGAACCACCATGGGTTATCGAGTCTTCGGGGACAGC
GGAGGAGAAGGACGGCGTCAAATGTGAGGCTGCAAACGTGCTGGACCCGG
TCGCAGGGCTGTACTGGTCACCACTGGTGGATGTCAAGACCCACTTCAAC
AGGTGATTTAGATCTATTCCATTCAACTGGCATTTTATGTGGCATCGTGT
GTCGCAATCGGCAGAGTGTTTGCCCAGAACCGAGAGGTCCCGGGTTCGAA
ACTCCGATATGCCCCGATGATGTGCCCTTGGGAAAGGTACTTTACACGAC
GTTCCTCACTTCGCCCATGTGTATAAAAAATGGGTATGTTAATATCTGTA
TGTGGCACTGTTAATATAAGTTATAAAAACTTGAGTGCAGTGCCACGTCG
TCCTTGTCTGTCAAAAACCGGAAGTAAAAAAATAAAAAAACTGGCATTTT
ACAAATATAACAGACGTAACATGAAGTATGTCGAAAGTTGCAACACGCCT
AATTATTTAACATGACAGATGCAAGTTACGAACTTTCATTGAAAGCAATC
ATCAGTAGTATAGGACAATCTCAAGTCAACCGTACACACTTACACTACAT
CTTCAGAAAGGACGCTGTAGCCGCATAGTTTCCGTTTAGAACCTTACTCG
AGCCTACACCCATGCCCACTACTATTTGCCAATAGAAATCAATCATCGTT
ATCATTCAAAAGTCAGCTAGAAACGTCAGAGTATATTATAATTTCAAAAC
ATTAAAGCATATTGCAGTTAAATGGAAAAATCGGTGAATAGTTTCATCAG
TTTGGTAAGTCACTGAATAAAAAGACTCCTTTAACACAACCAAGAAATTT
ATTCCACCGACGCTCCTGTGATTGTACATATGTAAATATTTTGTGTTTGG
GAATGCATCTCATTACGCATAAGCAGCAACAGCTGTGCTGCATTACTATG
TGAACAAGTCAGAATTGCCTTGAAGAAGGTGACAGATGCTCACCGAAACG
TCGGTGGAATAAATCTCTTGGTTGTGTAAAAAGAGTATTTTTTATTCAAT
GGAAAAATTATTTTGGTACACCAGGTGGAACATTGTCTTCGACTTCAAGG
CCTGCTACACCCTCACCCGTATCCGCCTGGTCAACTGCGGAGACACCACC
CATGACGTCAAGTCCTTCATTCTACAAAAAGCCGCCTGTACCAAACCGTA
CCACTGGGGAGACGTACTGGAGGTGGCGAAGGTGAAACCTGGCAGCAAGA
AGCCACAGGAGTTCGGCTGCTTCTCGGCAACCGCACGGTACTGGCGCCTG
CTGGTCACCAGCACTCACCAGGGAGCACAGCCAAACCTTACCAACGTCGA
CTTCTTTGGTTCCAAAGGTAAGTTTACTTAGATAATGCAGGCCTATGGAA
AATCATTTTCATCTCATTNTATAATACTTATTTGTATACCAGGTTGATTC
AATGCTGCTAGAAAGCATGGGTAAGAAGTCGTCCTAGTGTATTCTGTTTT
ATAATGGCATTTTTTTAGTCAAAATTATATAACTGTACATAAAGCACTAT
CCATCAAATCAATCTTAAGACATCATAGAGTATAACATGGAGTGTTCCAT
TTACAAAGGAGTTTTTCTTTTTCTCTTGTCTTCCCCTCCTTGTTGAATGA
ATTAACATACTTAAGAATGTCTGAAAATTTAAATATGATTTGCCTCTGCT
TTTAAATATATGTCTTTTGGCCAATAGAATTGTACGATTTTCAAGACAAT
TTTCGGAGGCTAAATTTCCTAATGTAACATTGAAGGAGTTATAATGGCAT
TAACAAAGGTGATGATATGTTGAACAAAGAAGTGTTCTATAGATTAATTG
ATGTACGTTTGTCTTCGTAGGTCTTCAAGGGCAATGAAGACACGGATACC
CCAGTTACCCACTCCTTTGCTGATTTCAACGGACCATTCAAAGCACGATT
TGTGAAGATCCACCCTGTGACATGGTACGACCACATCTGCATGCGAGCTG
AGATGATCGTGGAAAATGGTAAGGCCACTTCTGTAAAAGTATTTTTTTTA
AAGAATCTTCCCTATATCTGCTTACGACACTTGGGCGACAGCGGACCGGA
TTTAATAATGGTCTCTATGGGAGGGCAGCACCACATTTGCGTCAAAATAG
GGGTGCAATTACGATATTGCATTGACGATAAAAGAAGTTACGGTGTACCA
CGCCCAACCTAGCAAACGCTATGCCAAGTTACACACCAATGCGACAACGG
GATCGTGAGTTCTAGCTGCGAACGTGCAAACAAAAGCATTCACAATACTC
CCGTCAGGAGGTCATCCTCCTTCCCGGAGTAATTATCAAGTAAGGTTCAA
AGATCATGTGGGGAGTCCGTTTTGCTGTATCGACTGCAAGTCGTCGGCGA
CTGATGCTCTGAATGTACAGGTGTTATTAAGATGGTTACAGTAACATTTG
ATTGAAAGTTTATTTTTCTATCGTTGAGATTCATCAATCAGGTGTGATAC
AAGTTACGACGAGAATATTCATCAATCAGTGACTTGAAAAGGTAACGAGA
TACGCACCTCCAAATTTTCGATGTCTACTGTACATCTTGATCACGGAGTA
TCCTAGTCTCGCGAGAACACGAGACATAGGACGAGACTTGTATAGATCTT
CCTGCCTCCCCCTTTTATGTATACATGTTTTTACAGAGTCGAACCGACTA
GGTAACGGCAATGGACATTGGCATTTACCACATGTACCAACTAACGCTTG
TTTTCTTGTTCTTATAGAGCAGAAAAAGCTGGAAGTCTCACAGATCAAAA
CGGAGGCCATCATGACGTCAATCACGGTCAGCGTTTCCATGGTAACCGTC
GTGGCAACGGTGACGTCATCAGAGATGAGTGTCCATCATGCTGTTTCGCA
CTCAAAACTTGAATGCGTGGAGACGGCAACAGAGGCCGGGGCTTGGGTTG
CCAAGACCAACGATGAGAAGCAGTTCCTTCTGATAGACCTGGGCAGCAAG
AAAGTTGCTACAGAGATCATCACGAAGGGGAGGAACTCGAACCCTAACGG
TCCAGACGGAGAGACGTCACAGTGGGTGACGTCATACACCATCTCGTACG
GTATAGAGAACGGAGATGAGACTGAATACAAGGATGAAAATGGGCAGCTT
GTGGTTAGTATTACTCAGTCATGATATAAAAGTGCCCTAAGCGATTTCAG
TGGGTAAAACTGGAAATATTCTGGATAAAGCAATCTATATGAAATTGACA
TTTACTTCCCCATATTAGCACATTTTCATCAATATTTTATACTGTGGACA
TTAAAAAAGAGCACAGAAACAAGCTGCAAAATGAGTATTTTATTTATTGG
TACCACCCAATAATCAGCCAACAATCCAGCCATAATCGTTTTCTGTCGAC
AATTTGTGAGTTCCCACCACGCAACGACATCGCATCTTTGCTCCATGATG
GTCGATATGCAATTGGATAGTATTATTCAAACTTCAAACTTACTATGGAT
TGAAATCACTAAAAATAATTTTGAAAGTACGACTTTCAACTCCATTACAT
TGCTAAGGTTGCCTTTAAAGATATAGTGTACACTTAAATGATACCTGTGT
CTTTTAGCAAGGCTCCAGCTACACAAAGTATGTCTGCGTAAATTAAAGGT
ATTTCAGACAACAGTGATAATTTATACGTCAGCCATTTGCTAATAAAAGT
CATCTTATATCATCCTTTATTTTCTAAGTGTGTACTGTGCTTGTCCAGCA
TTAACACATACAGTCTATCAGTGAGAACATTAATTACATCCAAAATGTTC
TATCAAAAGGTGTTTGAAGGGAATGTGGACCGGGATTCCGCCGTCGTGCA
CTCCTTCGCCGAGTACAGCGGTACCTTCTACGCACGCTTTGTGAAGATCC
ACGTGGTCACCTGGCACGAGCACATCGCAATGCGAGCGGAGATAGTGTGT
GACGATGGTCAGTAATACATTCTTTACTATGTGGGAATAATGCAAGTAAT
CTCTAAGCAAAGGTTGAATGAGGATAACGATACCTTAGAAAAATTTTGAC
TAGATTTCTCCTTGGGGAGAGAATAGATGGTGCAAAATAAGATACATTAG
TTGTTACATGTATAGATCTGAAAGATACAAAAACAGTTCAACTTACGTAT
TAGATATATATTCACAAAATATCTTTATATAGAATATACGCAGTCAATAT
TGTTGGAAACTATGCTTATAATGTAGAATTGAATTGACAACTCCGCTCCC
TTTTTTGTTAAATGTTATGAAGGGCATCAGACGATTCATTTCATGCATTT
GATTGAAACAATACTTTTTATATACAACATACGTGTCACTGAATAAAAAG
ACTCTTTTTACACAACCAAGAGATTTATTCCACCGACGTTTCTGGCAATT
CTGACTGGTTCACATAATGAAATGCATTCCCAAACGCAAAGTATTTACAT
ATGTACAATCACAGGGGATGACATCACTATGCGGTCCCGTACAGAAGTGT
AACACATACACAACTATCGATCAAAAAACATTGCCTTGAAGAAGGTGACA
GATGGTCACCGAAACGGCGGTGGAATAAACCTCTTGGTTGTGTAAAAAGA
GTATTTTTATTCAGTGACCTACTAACTTGATGAAAATATTCACGAGTTTA
CATGTCATTCTAAAACGAAATGTCGCTTTCCTTTACAGGCTGTTGGATCG
GCCGTGAACCCCCATGGGTTATCGAGTCTTCGGGGACAGCGGAGGAGAAG
GACGGCGTCAAATGTGAGGCTGCAAACGTGCTGGACCCGGTCGCAGGGCT
GTACTGGTCACCACTGGTGGATGTTAAGACCCACTTCAACAGGTGATTCA
AATCCGAAAATAATTTCATCAGGTCGGTAGAATATAGGTATGGGAGATTC
TTTTTACAGAACCAGGTAATCTCACCTGCACCTATGTAGACTAGGTGATT
CAGATATACTCCATTCAACTGGCATTTTACAAATATAACAGACGGAACAT
GAAGTATGTCAAAAGTTGCAACAAATATTCAAAACGCGACCTAAATATTC
AACATGACAGATACAAGTGACATACTTTCATTGAAAGCAATTATCAGGCA
AGTAGTAGTGGACAACCTCAAGTCAACCATACACACTTAGACTACATCTT
CAGAAAGGACGCTGTAGCCGCATAGTTTCCGTTTACAACTTTATTCAAGC
CTACACCCATGCCCACTACTATCTGCCTATCGAAATCTATCATCGTTATC
ATTTAAAAGTCAGCTAGAAACGTCAGAGTATATTGTAATTCAAAACATTA
AAGAATATTGCAGTTAAATGGAAAAATCGATGAATAGTTTCATCAGGTTG
GTAAGTCACTGAATAAAAATACTCTTTTTACACAACCAAGAGATTTATTC
CACCGACGTTCCTGTGATTGTACATATGTAAATAGTTTGCGTTTGGGAAT
GCATCTCATTATGTATAAGTAGCGACACCTGTGCTACATTACTATGTGAA
CCAGTCAGAATTGCCTTGAAGAAGGTGACAAATGGTCACCGAAACGTCGG
TGGAATAGATCTCTTGGTTGTGTAAAAAAGTATTTTTATTAAATGGAAAA
ATCATTTCAGGTGGTACATCGTATTCGACTTCAAGGCCTGCTACACCCTC
ACCCGTATCCGCCTGGTCAACTGCGGCGACACCACCCATGACGTCAAGTC
CTTCATTCTACAAAAGGCCGCCTGTACCAAACCGTACCACTGGGGAGACG
TACTGGAGGTGGCAAAGGTGAAACCTGGCAGCAAGAAGCCGCAGGAGTTC
GGCTGCTTCTCGGCAACCGCACGGTACTGGC Coding sequence (CDS) from alignment at Sc0000058:261044..267724+ >transcript:BL84885_cuf0 ID=transcript:BL84885_cuf0|Name=transcript:BL84885_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1458bp|location=Sequence derived from alignment at Sc0000058:261044..267724+ (Branchiostoma lanceolatum)
GTGCACTCCTTCGCCGAGTACAGCGGCACCTTCTACGCACGGTTTGTGAA
GATCCACGTGGTCACCTGGCACGAGCACATCGCAATGCGAGCGGAGATCG
TGTGTGACGATGGCTGTTGGATCGGCCGTGAACCCCCATGGGTTATCGAG
TCTTCGGGGACAGCGGAGGAGAAGGACGGCGTCAAATGTGAGGCTGCAAA
CGTGCTGGACCCGGTCGCAGGGCTGTACTGGTCACCACTGGTGGATGTTA
AGACCCACTTCAACAGGTGGTACATCGTATTCGACTTCAAGGCCTGCTAC
ACCCTCACCCGTATCCGCCTGGTCAACTGCGGCGACACCACCCATGACGT
CAAGTCCTTCATTCTACAAAAGGCCGCCTGTACCAAACCGTACCACTGGG
GAGACGTACTGGAGGTGGCAAAGGTGAAACCTGGCAGCAAGAAGCCGCAG
GAGTTCGGCTGCTTCTCGGCAACCGCACGGTACTGGGTGCACTCCTTCGC
CGAGTACAGCGGCACCTTCTACGCACGGTTTGTGAAGATCCACGTGGTCA
CCTGGCACGAGCACATCGCAATGCGAGCGGAGATCGTGTGTGACGATGGC
TGTTGGATCGGCCGTGAACCCCCATGGGTTATCGAGTCTTCGGGGACAGC
GGAGGAGAAGGACGGCGTCAAATGTGAGGCTGCAAACGTGCTGGACCCGG
TCGCAGGGCTGTACTGGTCACCACTGGTGGATGTTAAGACCCACTTCAAC
AGGTGGTACATCGTATTCGACTTCAAGGCCTGCTACACCCTCACCCGTAT
CCGCCTGGTCAACTGCGGCGACACCACCCATGACGTCAAGTCCTTCATTC
TACAAAAGGCCGCCTGTACCAAACCGTACCACTGGGGAGACGTACTGGAG
GTGGCAAAGGTGAAACCTGGCAGCAAGAAGCCGCAGGAGTTCGGCTGCTT
CTCGGCAACCGCACGGTACTGGGTGCACTCCTTCGCCGAGTACAGCGGCA
CCTTCTACGCACGGTTTGTGAAGATCCACGTGGTCACCTGGCACGAGCAC
ATCGCAATGCGAGCGGAGATCGTGTGTGACGATGGCTGTTGGATCGGCCG
TGAACCCCCATGGGTTATCGAGTCTTCGGGGACAGCGGAGGAGAAGGACG
GCGTCAAATGTGAGGCTGCAAACGTGCTGGACCCGGTCGCAGGGCTGTAC
TGGTCACCACTGGTGGATGTTAAGACCCACTTCAACAGGTGGTACATCGT
ATTCGACTTCAAGGCCTGCTACACCCTCACCCGTATCCGCCTGGTCAACT
GCGGCGACACCACCCATGACGTCAAGTCCTTCATTCTACAAAAGGCCGCC
TGTACCAAACCGTACCACTGGGGAGACGTACTGGAGGTGGCAAAGGTGAA
ACCTGGCAGCAAGAAGCCGCAGGAGTTCGGCTGCTTCTCGGCAACCGCAC
GGTACTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000058 | genome | Sc0000058:261044..267724 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84885_cuf0 |
| Biotype | protein_coding |
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