|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84878_cuf0 >transcript:BL84878_cuf0-protein ID=transcript:BL84878_cuf0-protein|Name=transcript:BL84878_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=366bp
XVKPGWLSGTNMSVSTEAGTLTVRFMKNGLRFQNGWATILPSRQIYTVEF
QTDTLPFNLSYKANFHNFKDGDYLVMRHVLASRPDKVLMNKRLAERSYEP
LTYVKHKNLQWHLVNNTLSYIVSGKGKKMPTDIQVSVEFYDCSEPTCGGT
VYVSKRPRDAVFWSRDSSWRIGGSVRNGQTKVPQEGDDVDIPEGLWMVAD
VPLPRLGSLRIRGTLEVPIEHSNVINVSCIVIIGGRLVIGFEGEVVPRGQ
TITVALHGGCLLEDVLSSRAKRATGELENLVGIAVYGELDLHGSSHLVTW
THLSSTFAAGNNKIRVRDEVDWQPGDEIVVTSTSYDPHQAETFSIRKVGN
DRRTLYLDQPLQHTHL Run BLAST on NCBI mRNA from alignment at Sc0000023:1812495..1814853+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84878_cuf0 ID=transcript:BL84878_cuf0|Name=transcript:BL84878_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2359bp|location=Sequence derived from alignment at Sc0000023:1812495..1814853+ (Branchiostoma lanceolatum)
NACGTCAAACCTGGGTGGCTTAGCGGGACCAACATGTCCGTATCCACCGA
AGCGGGAACCCTGACGGTCCGGTTCATGAAAAACGGACTCAGATTTCAAA
ACGGCTGGGCGACAATTTTACCGAGTCGGCAGATCTACACCGTAGAGTTC
CAAACTGACACATTACCTTTTAATTTGAGCTACAAAGCTAATTTTCACAA
TTTTAAAGATGGTGACTACCTAGTGATGAGACATGTTCTTGCAAGTCGGC
CCGACAAAGTTTTGATGAACAAGCGTCTAGCAGAGAGAAGTTACGAGCCT
CTTACCTACGTGAAGCACAAGAATCTACAGTGGCATCTAGTGAACAACAC
TCTCAGCTACATAGGTAAGTGCCGATAAAGATTATTTGCAAATCAGATGT
TTACCTAGAACATTTGCATGTATACGATGGATCCAAGATGATGTTGGGGT
AAAAGATCGTAACCTTTTCTAGAAGCCTAGTTAGTTGAAAATTTCCCTGC
CACAAAGATAAGTGACTGAATTCGAACCTCCCAAATTCTGTTTGGAGATT
GCACGCGTAATCATATCAAAGATCAAAACATAGGTCCCTACATATATTTG
GTTTACGATTAACCTAAGGGTATGAAGTTGACACTAGCAAGATAACATAT
TGAACAAAAATATTACAAAACATGCAAACATCTCCAATGGTCATGAAACC
AATGCCATTCACACGTTTTTTTCTTTTCAAAATGCAATAATATAAGAAGA
AATAGTAGTAGTAAAATTATGTTTTTAGCATTAACAATAGAGAAGTTATA
ACGTATGCACATCAGGTATCTGTACGTCTTACCTTCATCATTATATACTT
GTATCTTTACCACAGTGAGCGGAAAGGGAAAGAAGATGCCAACCGATATT
CAGGTATCCGTTGAGTTTTACGACTGCAGCGAACCGACGTGTGGTGGGAC
GGTTTACGTCTCAAAGAGACCACGTGATGCGGTATTCTGGTCACGTGACT
CCAGCTGGCGAATAGGCGGCAGTGTCAGAAATGGACAGACTAAAGTACCA
CAGGAGGGTGATGATGTCGATATTCCAGAAGGTCTGTATAACTTTGCTTT
CATTGTATAAACTATCAATTTTCTTTTAATAGATTATTTCGGTACGAAAC
TATTTTGTTTTAGGACTGAGATCGTCAATCGTTCTTTGCATGCTGTTATC
TGACCAATGACTTCTGTCCTAAAGCTTTGTGAGTTTTCCAGTAGTTAAGT
TAGATTTTCAAGAAATGCCTAAAAGATGATTCTATTTACATACACTTAGT
ACATTGCTAATTGGTAAGTTAACGATCATGTGCGAAGGAACGCTGTGGAA
AAAAATACCTTTTTTACATGCTCCTTTATACTTTATCAAATCTATGCATA
TGTTGTCTAAATTCACTGAAACTATTCCCTCCCCCAGGCCTGTGGATGGT
TGCGGACGTACCCCTTCCTCGACTTGGTAGCTTGCGTATCCGGGGAACTT
TGGAAGTACCAATCGAGCACAGTAATGTGATCAACGTATCTTGCATTGTC
ATCATCGGTGGCCGACTCGTCATCGGTTTTGAGGGAGAAGTGGTCCCACG
CGGTCAAACAATAACTGTTGCCTTACATGGCGGCTGTTTACTTGAGGATG
TTCTCTCTTCTAGAGCAAAAAGGGCAACGGGAGAACTTGAGAATCTTGTC
GGAATAGGTAGAGCAAATTAAACTTTTGTTCCGTTTGTACTGGTATGAAT
GTATTCACAAAGCTATTTTACATTTAAAATTGCGCTTCTGCCCTTTTTGA
CGCATTGTTGTATAAGGTCAAAGTTTAATTTAATGTCCCTGGCTATAATT
AAAAATAACTTTGACATTAGACCACAATGCATCACGACTGCACATCCGCA
ATACGAACCGTGAAATCACTTCTTCCACTGCTTCTTTCTTTCATAGCATG
GTTCTTTTCTCCATTTGAGCGTGATATTTTACCATCGTCTATATCAAGCA
ATATCTTCTCTTAAGTCTTCAATGACTCTTTTGTAAATTGATGTCCAAAA
CCTTCATGTCCGAAACATAGTTGTTTCACCTACATCCTAATTTTTTTTCT
TTCTTTAAGCTGTTTATGGAGAACTGGACCTGCACGGGTCTTCCCATCTG
GTCACGTGGACGCATCTTTCTTCAACGTTTGCCGCGGGAAACAACAAAAT
TAGGGTACGGGACGAAGTAGACTGGCAGCCTGGGGACGAGATTGTGGTGA
CGTCAACGAGCTACGATCCGCACCAGGCGGAAACGTTCAGTATCAGAAAA
GTTGGGAACGATCGGCGAACTCTGTACCTCGACCAACCCCTACAGCACAC
ACATCTTGG Coding sequence (CDS) from alignment at Sc0000023:1812495..1814853+ >transcript:BL84878_cuf0 ID=transcript:BL84878_cuf0|Name=transcript:BL84878_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4392bp|location=Sequence derived from alignment at Sc0000023:1812495..1814853+ (Branchiostoma lanceolatum)
NACGTCAAACCTGGGTGGCTTAGCGGGACCAACATGTCCGTATCCACCGA
AGCGGGAACCCTGACGGTCCGGTTCATGAAAAACGGACTCAGATTTCAAA
ACGGCTGGGCGACAATTTTACCGAGTCGGCAGATCTACACCGTAGAGTTC
CAAACTGACACATTACCTTTTAATTTGAGCTACAAAGCTAATTTTCACAA
TTTTAAAGATGGTGACTACCTAGTGATGAGACATGTTCTTGCAAGTCGGC
CCGACAAAGTTTTGATGAACAAGCGTCTAGCAGAGAGAAGTTACGAGCCT
CTTACCTACGTGAAGCACAAGAATCTACAGTGGCATCTAGTGAACAACAC
TCTCAGCTACATAGTGAGCGGAAAGGGAAAGAAGATGCCAACCGATATTC
AGGTATCCGTTGAGTTTTACGACTGCAGCGAACCGACGTGTGGTGGGACG
GTTTACGTCTCAAAGAGACCACGTGATGCGGTATTCTGGTCACGTGACTC
CAGCTGGCGAATAGGCGGCAGTGTCAGAAATGGACAGACTAAAGTACCAC
AGGAGGGTGATGATGTCGATATTCCAGAAGGCCTGTGGATGGTTGCGGAC
GTACCCCTTCCTCGACTTGGTAGCTTGCGTATCCGGGGAACTTTGGAAGT
ACCAATCGAGCACAGTAATGTGATCAACGTATCTTGCATTGTCATCATCG
GTGGCCGACTCGTCATCGGTTTTGAGGGAGAAGTGGTCCCACGCGGTCAA
ACAATAACTGTTGCCTTACATGGCGGCTGTTTACTTGAGGATGTTCTCTC
TTCTAGAGCAAAAAGGGCAACGGGAGAACTTGAGAATCTTGTCGGAATAG
CTGTTTATGGAGAACTGGACCTGCACGGGTCTTCCCATCTGGTCACGTGG
ACGCATCTTTCTTCAACGTTTGCCGCGGGAAACAACAAAATTAGGGTACG
GGACGAAGTAGACTGGCAGCCTGGGGACGAGATTGTGGTGACGTCAACGA
GCTACGATCCGCACCAGGCGGAAACGTTCAGTATCAGAAAAGTTGGGAAC
GATCGGCGAACTCTGTACCTCGACCAACCCCTACAGCACACACATCTTNA
CGTCAAACCTGGGTGGCTTAGCGGGACCAACATGTCCGTATCCACCGAAG
CGGGAACCCTGACGGTCCGGTTCATGAAAAACGGACTCAGATTTCAAAAC
GGCTGGGCGACAATTTTACCGAGTCGGCAGATCTACACCGTAGAGTTCCA
AACTGACACATTACCTTTTAATTTGAGCTACAAAGCTAATTTTCACAATT
TTAAAGATGGTGACTACCTAGTGATGAGACATGTTCTTGCAAGTCGGCCC
GACAAAGTTTTGATGAACAAGCGTCTAGCAGAGAGAAGTTACGAGCCTCT
TACCTACGTGAAGCACAAGAATCTACAGTGGCATCTAGTGAACAACACTC
TCAGCTACATAGTGAGCGGAAAGGGAAAGAAGATGCCAACCGATATTCAG
GTATCCGTTGAGTTTTACGACTGCAGCGAACCGACGTGTGGTGGGACGGT
TTACGTCTCAAAGAGACCACGTGATGCGGTATTCTGGTCACGTGACTCCA
GCTGGCGAATAGGCGGCAGTGTCAGAAATGGACAGACTAAAGTACCACAG
GAGGGTGATGATGTCGATATTCCAGAAGGCCTGTGGATGGTTGCGGACGT
ACCCCTTCCTCGACTTGGTAGCTTGCGTATCCGGGGAACTTTGGAAGTAC
CAATCGAGCACAGTAATGTGATCAACGTATCTTGCATTGTCATCATCGGT
GGCCGACTCGTCATCGGTTTTGAGGGAGAAGTGGTCCCACGCGGTCAAAC
AATAACTGTTGCCTTACATGGCGGCTGTTTACTTGAGGATGTTCTCTCTT
CTAGAGCAAAAAGGGCAACGGGAGAACTTGAGAATCTTGTCGGAATAGCT
GTTTATGGAGAACTGGACCTGCACGGGTCTTCCCATCTGGTCACGTGGAC
GCATCTTTCTTCAACGTTTGCCGCGGGAAACAACAAAATTAGGGTACGGG
ACGAAGTAGACTGGCAGCCTGGGGACGAGATTGTGGTGACGTCAACGAGC
TACGATCCGCACCAGGCGGAAACGTTCAGTATCAGAAAAGTTGGGAACGA
TCGGCGAACTCTGTACCTCGACCAACCCCTACAGCACACACATCTTNACG
TCAAACCTGGGTGGCTTAGCGGGACCAACATGTCCGTATCCACCGAAGCG
GGAACCCTGACGGTCCGGTTCATGAAAAACGGACTCAGATTTCAAAACGG
CTGGGCGACAATTTTACCGAGTCGGCAGATCTACACCGTAGAGTTCCAAA
CTGACACATTACCTTTTAATTTGAGCTACAAAGCTAATTTTCACAATTTT
AAAGATGGTGACTACCTAGTGATGAGACATGTTCTTGCAAGTCGGCCCGA
CAAAGTTTTGATGAACAAGCGTCTAGCAGAGAGAAGTTACGAGCCTCTTA
CCTACGTGAAGCACAAGAATCTACAGTGGCATCTAGTGAACAACACTCTC
AGCTACATAGTGAGCGGAAAGGGAAAGAAGATGCCAACCGATATTCAGGT
ATCCGTTGAGTTTTACGACTGCAGCGAACCGACGTGTGGTGGGACGGTTT
ACGTCTCAAAGAGACCACGTGATGCGGTATTCTGGTCACGTGACTCCAGC
TGGCGAATAGGCGGCAGTGTCAGAAATGGACAGACTAAAGTACCACAGGA
GGGTGATGATGTCGATATTCCAGAAGGCCTGTGGATGGTTGCGGACGTAC
CCCTTCCTCGACTTGGTAGCTTGCGTATCCGGGGAACTTTGGAAGTACCA
ATCGAGCACAGTAATGTGATCAACGTATCTTGCATTGTCATCATCGGTGG
CCGACTCGTCATCGGTTTTGAGGGAGAAGTGGTCCCACGCGGTCAAACAA
TAACTGTTGCCTTACATGGCGGCTGTTTACTTGAGGATGTTCTCTCTTCT
AGAGCAAAAAGGGCAACGGGAGAACTTGAGAATCTTGTCGGAATAGCTGT
TTATGGAGAACTGGACCTGCACGGGTCTTCCCATCTGGTCACGTGGACGC
ATCTTTCTTCAACGTTTGCCGCGGGAAACAACAAAATTAGGGTACGGGAC
GAAGTAGACTGGCAGCCTGGGGACGAGATTGTGGTGACGTCAACGAGCTA
CGATCCGCACCAGGCGGAAACGTTCAGTATCAGAAAAGTTGGGAACGATC
GGCGAACTCTGTACCTCGACCAACCCCTACAGCACACACATCTTNACGTC
AAACCTGGGTGGCTTAGCGGGACCAACATGTCCGTATCCACCGAAGCGGG
AACCCTGACGGTCCGGTTCATGAAAAACGGACTCAGATTTCAAAACGGCT
GGGCGACAATTTTACCGAGTCGGCAGATCTACACCGTAGAGTTCCAAACT
GACACATTACCTTTTAATTTGAGCTACAAAGCTAATTTTCACAATTTTAA
AGATGGTGACTACCTAGTGATGAGACATGTTCTTGCAAGTCGGCCCGACA
AAGTTTTGATGAACAAGCGTCTAGCAGAGAGAAGTTACGAGCCTCTTACC
TACGTGAAGCACAAGAATCTACAGTGGCATCTAGTGAACAACACTCTCAG
CTACATAGTGAGCGGAAAGGGAAAGAAGATGCCAACCGATATTCAGGTAT
CCGTTGAGTTTTACGACTGCAGCGAACCGACGTGTGGTGGGACGGTTTAC
GTCTCAAAGAGACCACGTGATGCGGTATTCTGGTCACGTGACTCCAGCTG
GCGAATAGGCGGCAGTGTCAGAAATGGACAGACTAAAGTACCACAGGAGG
GTGATGATGTCGATATTCCAGAAGGCCTGTGGATGGTTGCGGACGTACCC
CTTCCTCGACTTGGTAGCTTGCGTATCCGGGGAACTTTGGAAGTACCAAT
CGAGCACAGTAATGTGATCAACGTATCTTGCATTGTCATCATCGGTGGCC
GACTCGTCATCGGTTTTGAGGGAGAAGTGGTCCCACGCGGTCAAACAATA
ACTGTTGCCTTACATGGCGGCTGTTTACTTGAGGATGTTCTCTCTTCTAG
AGCAAAAAGGGCAACGGGAGAACTTGAGAATCTTGTCGGAATAGCTGTTT
ATGGAGAACTGGACCTGCACGGGTCTTCCCATCTGGTCACGTGGACGCAT
CTTTCTTCAACGTTTGCCGCGGGAAACAACAAAATTAGGGTACGGGACGA
AGTAGACTGGCAGCCTGGGGACGAGATTGTGGTGACGTCAACGAGCTACG
ATCCGCACCAGGCGGAAACGTTCAGTATCAGAAAAGTTGGGAACGATCGG
CGAACTCTGTACCTCGACCAACCCCTACAGCACACACATCTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000023 | genome | Sc0000023:1812495..1814853 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84878_cuf0 |
| Biotype | protein_coding |
|
