transcript:BL84466_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84466_cuf0
Unique Nametranscript:BL84466_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84466_cuf0

>transcript:BL84466_cuf0-protein ID=transcript:BL84466_cuf0-protein|Name=transcript:BL84466_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=443bp
CGYRTANRSQLSQHMRTHTGEKPYKCEKCDYSAAKKSNLDLHRLTHTGEK
PYMCGECGYRTAQKSHLSQHMRTHTGEKPHKCDQCDYAAANKSNLDQHRV
NHTGEKPYMCGECGFRTAKKSTLSQHMRTHTGEKPYKCDRCDYAAAKKSN
LDKHRVNHTGEKPYMCGECGYRTANRSQLSQHMRTHTGEKPYMCGECGYR
TAQKSHLSQHMRTHTGEKPHKCDQCDYAAANKSNLDQHRVNHTGEKPYMC
GECGFRTAKKSTLSQHMRTHTGEKPYKCDRCDYAAAKKSNLDKHRVNHTG
EKPYMCGECGYRTANRSQLSQHMRTHTGEKPYMCGECGYRTAQKSHLSQH
MRTHTGEKPHKCDQCDYAAATKSNLDQHRVNHTGEKPYMCGECGFRTAKK
STLSQHMRTHTGEKPYKCDQCDYAAAKKSNLDKHRVKHTGEKP
Run BLAST on NCBI

mRNA from alignment at Sc0000377:189599..193071-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84466_cuf0 ID=transcript:BL84466_cuf0|Name=transcript:BL84466_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3473bp|location=Sequence derived from alignment at Sc0000377:189599..193071- (Branchiostoma lanceolatum)
TGTGGGTACAGGACAGCTAATAGGTCTCAATTATCCCAACATATGAGAAC
TCATACTGGTGAGAAACCCTACAAGTGTGAAAAATGTGACTATTCTGCTG
CCAAGAAATCAAATTTGGACCTACATCGACTAACTCACACTGGTGAGAAA
CCCTACATGTGCGGGGAGTGTGGGTACAGGACAGCTCAAAAGTCTCACTT
ATCCCAACATATGAGAACTCATACTGGAGAGAAACCCCACAAGTGTGACC
AATGTGACTATGCTGCTGCCAATAAATCAAATTTGGACCAACATCGAGTA
AATCACACTGGTGAGAAACCCTACATGTGTGGGGAATGTGGGTTCAGGAC
AGCTAAAAAGTCTACCTTATCCCAACATATGAGAACTCATACTGGAGAGA
AGCCCTACAAGTGTGACCGATGTGACTATGCTGCAGCCAAGAAATCAAAT
TTGGACAAGCATCGAGTAAATCACACTGGTGAGAAACCCTACATGTGTGG
GGAGTGTGGGTACAGGACAGCTAATAGGTCTCAATTATCCCAACATATGA
GAACTCATACTGGTGAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGG
ACAGCTCAAAAGTCTCACTTATCCCAACATATGAGAACTCATACTGGAGA
GAAACCCCACAAGTGTGACCAATGTGACTATGCTGCTGCCAATAAATCAA
ATTTGGACCAACATCGAGTAAATCACACTGGTGAGAAACCCTACATGTGT
GGGGAATGTGGGTTCAGGACAGCTAAAAAGTCTACCTTATCCCAACATAT
GAGAACTCATACTGGAGAGAAGCCCTACAAGTGTGACCGATGTGACTATG
CTGCAGCCAAGAAATCAAATTTGGACAAGCATCGAGTAAATCACACTGGT
GAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAGCTAATAGGTC
TCAATTATCCCAACATATGAGAACTCATACTGGTGAGAAACCCTACATGT
GTGGGGAGTGTGGGTACAGGACAGCTCAAAAGTCTCACTTATCCCAACAT
ATGAGAACTCATACTGGAGAGAAACCCCACAAGTGTGACCAATGTGACTA
TGCTGCTGCCACTAAATCAAATTTGGACCAACATCGAGTAAATCACACTG
GTGAGAAACCCTACATGTGTGGGGAATGTGGGTTCAGGACAGCTAAAAAG
TCTACCTTATCCCAACATATGAGAACTCATACTGGTGAGAAGCCCTACAA
GTGTGACCAATGTGACTATGCTGCTGCCAAGAAATCAAATTTGGACAAGC
ATCGAGTAAAACACACTGGTGAGAAACCCTAAATGTGTGGGGAGTGTGGG
TTCAGGACAGCTCATAAGTCTCACTTATCCGATCACATGAAATCTCACAC
AGGCGAAAAACCCTTCATGTGTGGGGAGTGTGGGTATAGAGCTGCCAAGA
AGTCTCACTTATCCAGGCATATGAAAACTCATACTGGAGAGAAACTCTAC
AAGTGTGACCAGTGTGACTATTCTGCAGTCGAAAAAGCCAGTTTGGACAA
CCATCGAGTAAAACACACTGGTGAGAAACCCTACATGTGTGAGGAGTGTG
GGTACAGGACAGCTCGAAGGTCTCACTTATCCGACCATATGAAATCTCAC
ACAGGAGAAAAACCATTCGTATGTGAGGAGTGTGGGTACAGGACAGCTTA
TCACACTTATCCCAGCATATGAGAACTCATACTGGAGAGAAACCCTACAA
GTGCGGATCGTGTGATTACAGGACGGCTCATAGGTCCGCCTTATCCCAAC
ACATGAAAACTCATACTGGAGCAAAACCCTACAAGTGTGACTATTCTGCT
GCCGAGAAATGAAATTTGGAGCAACATCGAGTAACTCACACTTGTGAGAA
ACCCTATATGTGTGACGAGTGTAAGTACAAGACAGCTAAAAAGTCTCACT
TATCCCAACATATGGGAACTCATACTGGAGAGAAACCCTATAAGTGTGAC
AAGTTTGAGTATTCTGCAGCCCAGTAATGACAGTTTGGACCAGCATCAAG
AAGTAAAGAAACCTACATGTGTAGGGAGTGTGGGTACAGGACAGCTCATA
GCTCCATATATGCAGACATCTGAGACATCATATTGGCGAGAAACTCCACA
TATGTGACCTGTGTGACTGTTCTGAATCCCAGAAATCCGACAGCCATCTG
AGAAATCATACCGGTGAGAAACCACGTGTGGGGAGTGTGGGTACAGGACA
GTTAAGAAGCTTGACTTATCCAAACACAAGAGAACTCATTGGAGAAAAAA
CCCACAGTTGTGACCTGTGTGTCTATTCTGTTCTGCAGAAATCGGCTATT
GGCTTCAATGGAGAAAAGGAGAAAAAAAATCGAGTACCACTCGAGGAGTT
TTGGTATGGGACAACTATGAGGCCTGGCTTATTTCAATATATGAAAACTC
GCATATAATATACATGGCTATTCTCCTACTCCTACACTCCTACATGTAAC
AAGTGGATTGTTGGGAGGTCTATGGATTTGGATAAGATCATAGAATTAAA
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTC
TCTCTCTATATATATATATATGTATATTATATTATATTTTTGGCCTTTTC
TATCGAAACGAGAGCACTTGACGAGCATGTAACATATTGCAAAGTGGATT
GTTGAGAAGTTCATGGATTTATGTAATTCCCTGTCCAATGTATAACTAGT
AACTATAAGTCTAAAGAAAATACTACTCTGTAGAAATTTCAGCTAAAGCA
CTTTCCATACCGGAGCACAGAATGCAGAATAGATGTGCATGTATGTATGG
TTTTGTTTTCAAATTCATGTAATTTCCTGTACAATGTAAAACAAGTAAGT
GTAAGTGTTATGAAAATACTTTTCTGTACAAATTTCAGCTAAAGCACTTT
TCATACCGAAGAACAGAACGCTGAATTGATGTGCATGTATGTATGGTTTT
GTTTTCAAATTCATGTTATTTACTGTACAATGTAAAACAAGTAAGTGTAA
GTGTTATGAAAATACTTTTCTGTACAAATTTCAGCTAAGGCACTTTTCAT
ATCGAAGCACAGAACACAGAATAGATGTGCATGTATGTAAGATTGGCTTT
TGATAACTTGTGTCATCCCTAACATGGATAATTTAACGAATTTACAGTAT
ATGTTATACTTTGTCAATGCTTGGCATATGTTGTTATTTTATTTATCATC
ATATCTGATGGATTTCATTAAAGGAGCTGTTTCTGCCGGTTTTAGTTTCA
GTACTTTTTACACTTTGCCTCCACTTTGGCATTGCCTGAATGATGTTAAA
ATTTGTAAAAAATGAAATTCGTAAAAATCTCCCAACAGATCTTCCTGTGC
AAAATCGAGATGGTGTCTGACTGGTGTCCGGCAATTCTCAGTCACTTTTG
CCTATAAGTAAAATGTAATCCCC

Coding sequence (CDS) from alignment at Sc0000377:189599..193071-

>transcript:BL84466_cuf0 ID=transcript:BL84466_cuf0|Name=transcript:BL84466_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1332bp|location=Sequence derived from alignment at Sc0000377:189599..193071- (Branchiostoma lanceolatum)
TGTGGGTACAGGACAGCTAATAGGTCTCAATTATCCCAACATATGAGAAC
TCATACTGGTGAGAAACCCTACAAGTGTGAAAAATGTGACTATTCTGCTG
CCAAGAAATCAAATTTGGACCTACATCGACTAACTCACACTGGTGAGAAA
CCCTACATGTGCGGGGAGTGTGGGTACAGGACAGCTCAAAAGTCTCACTT
ATCCCAACATATGAGAACTCATACTGGAGAGAAACCCCACAAGTGTGACC
AATGTGACTATGCTGCTGCCAATAAATCAAATTTGGACCAACATCGAGTA
AATCACACTGGTGAGAAACCCTACATGTGTGGGGAATGTGGGTTCAGGAC
AGCTAAAAAGTCTACCTTATCCCAACATATGAGAACTCATACTGGAGAGA
AGCCCTACAAGTGTGACCGATGTGACTATGCTGCAGCCAAGAAATCAAAT
TTGGACAAGCATCGAGTAAATCACACTGGTGAGAAACCCTACATGTGTGG
GGAGTGTGGGTACAGGACAGCTAATAGGTCTCAATTATCCCAACATATGA
GAACTCATACTGGTGAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGG
ACAGCTCAAAAGTCTCACTTATCCCAACATATGAGAACTCATACTGGAGA
GAAACCCCACAAGTGTGACCAATGTGACTATGCTGCTGCCAATAAATCAA
ATTTGGACCAACATCGAGTAAATCACACTGGTGAGAAACCCTACATGTGT
GGGGAATGTGGGTTCAGGACAGCTAAAAAGTCTACCTTATCCCAACATAT
GAGAACTCATACTGGAGAGAAGCCCTACAAGTGTGACCGATGTGACTATG
CTGCAGCCAAGAAATCAAATTTGGACAAGCATCGAGTAAATCACACTGGT
GAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAGCTAATAGGTC
TCAATTATCCCAACATATGAGAACTCATACTGGTGAGAAACCCTACATGT
GTGGGGAGTGTGGGTACAGGACAGCTCAAAAGTCTCACTTATCCCAACAT
ATGAGAACTCATACTGGAGAGAAACCCCACAAGTGTGACCAATGTGACTA
TGCTGCTGCCACTAAATCAAATTTGGACCAACATCGAGTAAATCACACTG
GTGAGAAACCCTACATGTGTGGGGAATGTGGGTTCAGGACAGCTAAAAAG
TCTACCTTATCCCAACATATGAGAACTCATACTGGTGAGAAGCCCTACAA
GTGTGACCAATGTGACTATGCTGCTGCCAAGAAATCAAATTTGGACAAGC
ATCGAGTAAAACACACTGGTGAGAAACCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84466gene:BL84466Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84466_cuf0-E1BL84466_cuf0-E1-1564476830-452566Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84466_cuf0transcript:BL84466_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000377genomeSc0000377:189599..193071 -
Properties
Property NameValue
Transcript idBL84466_cuf0
Biotypeprotein_coding