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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84411_cuf1 >transcript:BL84411_cuf1-protein ID=transcript:BL84411_cuf1-protein|Name=transcript:BL84411_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=553bp
AVEEDRRPVTPPQSPKLVLTKEPVSISIDDERYKYITNSHTFQQELEAKI
DEIEGVLDLSESGKVEVRPQQELPETDWPAWETKCRTALEATLDSIAVVR
KEVPANLWEAVAEKSSKCRQRHQSVMLKEDRAVGELVIVGHDNKAVRQAD
QLLSVVIEECIKKSTEEVVEEEFHPSKLKLIQKTDILEETDDVKTTIDIS
TGRVTLKGHKDATTKLIKAMYKKISDFERRTVEVDERKRRMLMSECGVGY
VQSQFAEFSISAEYYYDGNEIVCIATTKKDAEAALAVIEPAIVTENYVIP
TESVDLCESPKWRALREEMRGPLLEWKENTTLETTVVQLTGTKTNREDTK
RRLSKFLQENTLLNATLAVDTGTSRYLWEHENVKQKVEAKLKHKRVSIVL
NEGVDRFGKPVSGFLVRGTSEGKDEACSLLREYAAKVKTRRHKVEKPGMR
HFLTEGTGGDSIKLIETTEKCVIELENVKTEKPGDAIRGQEQNTRQICNY
TRKDGRDLVVLLGDLTCHHVDVMVNAANPELKHKGGLAHKIVLKGGKEIQ
EEC Run BLAST on NCBI mRNA from alignment at Sc0000143:646259..648899- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84411_cuf1 ID=transcript:BL84411_cuf1|Name=transcript:BL84411_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2641bp|location=Sequence derived from alignment at Sc0000143:646259..648899- (Branchiostoma lanceolatum)
CTGCTGTTGAAGAAGATCGAAGGCCAGTGACCCCACCACAGTCTCCTAAA
TTGGTACTCACAAAGGAACCGGTGTCCATAAGCATCGATGATGAGCGTTA
CAAGTACATCACCAACAGTCATACTTTCCAGCAAGAATTGGAGGCAAAAA
TTGACGAGATTGAGGGGGTGCTAGATCTAAGTGAGTCGGGAAAAGTAGAG
GTTCGCCCACAACAAGAGCTCCCTGAAACAGATTGGCCGGCATGGGAAAC
AAAATGCAGGACTGCACTAGAAGCCACCTTAGACAGTATCGCTGTAGTCA
GGAAAGAGGTGCCAGCCAACTTATGGGAAGCTGTAGCCGAGAAGAGTTCC
AAATGCAGACAGCGTCATCAGTCTGTTATGCTCAAGGAAGACAGAGCAGT
AGGGGAACTTGTGATCGTAGGCCACGACAACAAGGCAGTCAGACAGGCAG
ACCAACTACTCAGTGTCGTCATAGAAGAATGTATCAAGAAAAGTACTGAG
GAAGTCGTTGAAGAAGAGTTTCATCCTTCTAAGCTCAAGTTGATCCAAAA
GACTGATATTCTTGAAGAAACAGATGACGTGAAGACTACAATTGATATTT
CAACCGGACGAGTCACACTCAAAGGACACAAAGATGCAACAACCAAACTG
ATCAAAGCGATGTATAAAAAGATTAGTGACTTTGAGCGACGTACTGTAGA
GGTAGATGAACGTAAGAGGCGGATGCTTATGTCAGAGTGTGGAGTTGGAT
ATGTCCAAAGCCAATTTGCTGAATTCAGTATCAGTGCTGAATACTACTAT
GACGGCAATGAGATAGTTTGCATTGCTACAACAAAGAAGGATGCTGAGGC
TGCATTGGCAGTGATTGAGCCAGCCATAGTTACTGAAAATTATGTCATCC
CAACGGAAAGTGTAGACCTTTGCGAATCACCAAAGTGGCGTGCGCTTAGA
GAGGAAATGAGAGGACCACTGCTTGAGTGGAAAGAAAACACAACTCTTGA
AACTACAGTTGTACAGCTGACAGGAACCAAGACAAACCGCGAAGATACAA
AACGTCGTTTGTCAAAGTTTCTACAAGAGAACACTCTCTTGAATGCCACT
CTTGCTGTTGACACAGGAACAAGTAGGTACCTGTGGGAACATGAGAATGT
GAAGCAAAAGGTCGAAGCCAAATTAAAACACAAAAGAGTAAGCATCGTGC
TAAATGAAGGAGTGGATAGGTTTGGAAAACCTGTGAGTGGTTTTCTGGTA
AGAGGAACAAGCGAAGGGAAGGATGAAGCGTGCAGCCTTCTTCGTGAATA
TGCAGCAAAAGTGAAAACGAGAAGACATAAAGTTGAAAAACCAGGTATGA
AATTGGTATATACATCTATATATCTATATGTATCTATATATATTTATAAT
ATATATATATATACATATATATATATATATATATATATAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGATACATACTATAAGATAAATATCTAAAGATAG
AAAGATAGATAGATTTTCAGATAGAAAGATAGAGAAATAGATAGATATTC
ACTTTAAGAACAACTTTGAAAAATCTTGCATATTGGACAACAAGAGTAGG
CAAAAGTAAATTCACAGGCTTTTAAAAGTCAAAGCCGTCTCTGATCAATA
CATATGTCTTTCTCAGATGGTAATCAATCTCTTATGTACTTCATCTAAAA
TGTGCTTGAATCAAATTTCAGGTATGCGGCATTTCTTGACAGAGGGCACC
GGGGGGGATTCTATCAAGCTTATCGAGACTACGGAGAAATGTGTAATCGA
ACTTGAAAATGTCAAAACAGAGAAACCTGGTGACGCCATCAGAGGACAGG
AACAAAACACAAGACAGGTACACCATTTTAACGTGGATTTTAGTTTAATA
AACACTTTTCAAAATGTAACCATTTTATTTTTTTTGTAGGCCTTGGTCGG
GATAGTAAACCTAATATACTTACAAACTTTTATATCAGAGTTTGGTGTAC
TAAAAGCACGTAGTTATCTTTCACCAACTGCGTGGTTTAGCATTTGTTCT
CTTACAAATTGCTGAACGGAAATTTACTATCTAAACACCGTTTTGATACA
ATAGCTTAAGTGAATAATTTATTGATATTCTATGCATTGCAGATTTGCAA
CTATACCCGTAAAGATGGAAGAGACCTTGTTGTGTTGTTGGGTGATTTGA
CATGTCATCATGTTGATGTCATGGTCAATGCTGCAAATCCTGAGCTCAAG
CACAAGGGAGGTCTAGCGCATAAGATAGTTCTTAAAGGTAAATTCTGACT
AAAGAAGAATTCAATAAGTCATAAATAACAGCTAAATAGCAGTGGAAGAG
TATTATAAATATCAACGAAGCATAGGCTAGACACCCAGACTGGAAGAAGA
TGGAGTCTTCCATGACCGGGAAAAGTGGAGAACTGACAGGTCCTGAAAGG
CCTACCTGGGGAAGATGTAATATGTAAGAATAAGTTAACAGACAAACAAA
ATCTTATATATACTTCAATAAGGTATAACATATCATGTCAATCTATAAGA
AAATAATACATTCTATGTAAGGTATTTGTTTGTATAACCATGACACTTTT
ATCGTGTTACATCAGGTGGAAAAGAAATCCAAGAAGAATGT Coding sequence (CDS) from alignment at Sc0000143:646259..648899- >transcript:BL84411_cuf1 ID=transcript:BL84411_cuf1|Name=transcript:BL84411_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=6636bp|location=Sequence derived from alignment at Sc0000143:646259..648899- (Branchiostoma lanceolatum)
GCTGTTGAAGAAGATCGAAGGCCAGTGACCCCACCACAGTCTCCTAAATT
GGTACTCACAAAGGAACCGGTGTCCATAAGCATCGATGATGAGCGTTACA
AGTACATCACCAACAGTCATACTTTCCAGCAAGAATTGGAGGCAAAAATT
GACGAGATTGAGGGGGTGCTAGATCTAAGTGAGTCGGGAAAAGTAGAGGT
TCGCCCACAACAAGAGCTCCCTGAAACAGATTGGCCGGCATGGGAAACAA
AATGCAGGACTGCACTAGAAGCCACCTTAGACAGTATCGCTGTAGTCAGG
AAAGAGGTGCCAGCCAACTTATGGGAAGCTGTAGCCGAGAAGAGTTCCAA
ATGCAGACAGCGTCATCAGTCTGTTATGCTCAAGGAAGACAGAGCAGTAG
GGGAACTTGTGATCGTAGGCCACGACAACAAGGCAGTCAGACAGGCAGAC
CAACTACTCAGTGTCGTCATAGAAGAATGTATCAAGAAAAGTACTGAGGA
AGTCGTTGAAGAAGAGTTTCATCCTTCTAAGCTCAAGTTGATCCAAAAGA
CTGATATTCTTGAAGAAACAGATGACGTGAAGACTACAATTGATATTTCA
ACCGGACGAGTCACACTCAAAGGACACAAAGATGCAACAACCAAACTGAT
CAAAGCGATGTATAAAAAGATTAGTGACTTTGAGCGACGTACTGTAGAGG
TAGATGAACGTAAGAGGCGGATGCTTATGTCAGAGTGTGGAGTTGGATAT
GTCCAAAGCCAATTTGCTGAATTCAGTATCAGTGCTGAATACTACTATGA
CGGCAATGAGATAGTTTGCATTGCTACAACAAAGAAGGATGCTGAGGCTG
CATTGGCAGTGATTGAGCCAGCCATAGTTACTGAAAATTATGTCATCCCA
ACGGAAAGTGTAGACCTTTGCGAATCACCAAAGTGGCGTGCGCTTAGAGA
GGAAATGAGAGGACCACTGCTTGAGTGGAAAGAAAACACAACTCTTGAAA
CTACAGTTGTACAGCTGACAGGAACCAAGACAAACCGCGAAGATACAAAA
CGTCGTTTGTCAAAGTTTCTACAAGAGAACACTCTCTTGAATGCCACTCT
TGCTGTTGACACAGGAACAAGTAGGTACCTGTGGGAACATGAGAATGTGA
AGCAAAAGGTCGAAGCCAAATTAAAACACAAAAGAGTAAGCATCGTGCTA
AATGAAGGAGTGGATAGGTTTGGAAAACCTGTGAGTGGTTTTCTGGTAAG
AGGAACAAGCGAAGGGAAGGATGAAGCGTGCAGCCTTCTTCGTGAATATG
CAGCAAAAGTGAAAACGAGAAGACATAAAGTTGAAAAACCAGGTATGCGG
CATTTCTTGACAGAGGGCACCGGGGGGGATTCTATCAAGCTTATCGAGAC
TACGGAGAAATGTGTAATCGAACTTGAAAATGTCAAAACAGAGAAACCTG
GTGACGCCATCAGAGGACAGGAACAAAACACAAGACAGATTTGCAACTAT
ACCCGTAAAGATGGAAGAGACCTTGTTGTGTTGTTGGGTGATTTGACATG
TCATCATGTTGATGTCATGGTCAATGCTGCAAATCCTGAGCTCAAGCACA
AGGGAGGTCTAGCGCATAAGATAGTTCTTAAAGGTGGAAAAGAAATCCAA
GAAGAATGTGCTGTTGAAGAAGATCGAAGGCCAGTGACCCCACCACAGTC
TCCTAAATTGGTACTCACAAAGGAACCGGTGTCCATAAGCATCGATGATG
AGCGTTACAAGTACATCACCAACAGTCATACTTTCCAGCAAGAATTGGAG
GCAAAAATTGACGAGATTGAGGGGGTGCTAGATCTAAGTGAGTCGGGAAA
AGTAGAGGTTCGCCCACAACAAGAGCTCCCTGAAACAGATTGGCCGGCAT
GGGAAACAAAATGCAGGACTGCACTAGAAGCCACCTTAGACAGTATCGCT
GTAGTCAGGAAAGAGGTGCCAGCCAACTTATGGGAAGCTGTAGCCGAGAA
GAGTTCCAAATGCAGACAGCGTCATCAGTCTGTTATGCTCAAGGAAGACA
GAGCAGTAGGGGAACTTGTGATCGTAGGCCACGACAACAAGGCAGTCAGA
CAGGCAGACCAACTACTCAGTGTCGTCATAGAAGAATGTATCAAGAAAAG
TACTGAGGAAGTCGTTGAAGAAGAGTTTCATCCTTCTAAGCTCAAGTTGA
TCCAAAAGACTGATATTCTTGAAGAAACAGATGACGTGAAGACTACAATT
GATATTTCAACCGGACGAGTCACACTCAAAGGACACAAAGATGCAACAAC
CAAACTGATCAAAGCGATGTATAAAAAGATTAGTGACTTTGAGCGACGTA
CTGTAGAGGTAGATGAACGTAAGAGGCGGATGCTTATGTCAGAGTGTGGA
GTTGGATATGTCCAAAGCCAATTTGCTGAATTCAGTATCAGTGCTGAATA
CTACTATGACGGCAATGAGATAGTTTGCATTGCTACAACAAAGAAGGATG
CTGAGGCTGCATTGGCAGTGATTGAGCCAGCCATAGTTACTGAAAATTAT
GTCATCCCAACGGAAAGTGTAGACCTTTGCGAATCACCAAAGTGGCGTGC
GCTTAGAGAGGAAATGAGAGGACCACTGCTTGAGTGGAAAGAAAACACAA
CTCTTGAAACTACAGTTGTACAGCTGACAGGAACCAAGACAAACCGCGAA
GATACAAAACGTCGTTTGTCAAAGTTTCTACAAGAGAACACTCTCTTGAA
TGCCACTCTTGCTGTTGACACAGGAACAAGTAGGTACCTGTGGGAACATG
AGAATGTGAAGCAAAAGGTCGAAGCCAAATTAAAACACAAAAGAGTAAGC
ATCGTGCTAAATGAAGGAGTGGATAGGTTTGGAAAACCTGTGAGTGGTTT
TCTGGTAAGAGGAACAAGCGAAGGGAAGGATGAAGCGTGCAGCCTTCTTC
GTGAATATGCAGCAAAAGTGAAAACGAGAAGACATAAAGTTGAAAAACCA
GGTATGCGGCATTTCTTGACAGAGGGCACCGGGGGGGATTCTATCAAGCT
TATCGAGACTACGGAGAAATGTGTAATCGAACTTGAAAATGTCAAAACAG
AGAAACCTGGTGACGCCATCAGAGGACAGGAACAAAACACAAGACAGATT
TGCAACTATACCCGTAAAGATGGAAGAGACCTTGTTGTGTTGTTGGGTGA
TTTGACATGTCATCATGTTGATGTCATGGTCAATGCTGCAAATCCTGAGC
TCAAGCACAAGGGAGGTCTAGCGCATAAGATAGTTCTTAAAGGTGGAAAA
GAAATCCAAGAAGAATGTGCTGTTGAAGAAGATCGAAGGCCAGTGACCCC
ACCACAGTCTCCTAAATTGGTACTCACAAAGGAACCGGTGTCCATAAGCA
TCGATGATGAGCGTTACAAGTACATCACCAACAGTCATACTTTCCAGCAA
GAATTGGAGGCAAAAATTGACGAGATTGAGGGGGTGCTAGATCTAAGTGA
GTCGGGAAAAGTAGAGGTTCGCCCACAACAAGAGCTCCCTGAAACAGATT
GGCCGGCATGGGAAACAAAATGCAGGACTGCACTAGAAGCCACCTTAGAC
AGTATCGCTGTAGTCAGGAAAGAGGTGCCAGCCAACTTATGGGAAGCTGT
AGCCGAGAAGAGTTCCAAATGCAGACAGCGTCATCAGTCTGTTATGCTCA
AGGAAGACAGAGCAGTAGGGGAACTTGTGATCGTAGGCCACGACAACAAG
GCAGTCAGACAGGCAGACCAACTACTCAGTGTCGTCATAGAAGAATGTAT
CAAGAAAAGTACTGAGGAAGTCGTTGAAGAAGAGTTTCATCCTTCTAAGC
TCAAGTTGATCCAAAAGACTGATATTCTTGAAGAAACAGATGACGTGAAG
ACTACAATTGATATTTCAACCGGACGAGTCACACTCAAAGGACACAAAGA
TGCAACAACCAAACTGATCAAAGCGATGTATAAAAAGATTAGTGACTTTG
AGCGACGTACTGTAGAGGTAGATGAACGTAAGAGGCGGATGCTTATGTCA
GAGTGTGGAGTTGGATATGTCCAAAGCCAATTTGCTGAATTCAGTATCAG
TGCTGAATACTACTATGACGGCAATGAGATAGTTTGCATTGCTACAACAA
AGAAGGATGCTGAGGCTGCATTGGCAGTGATTGAGCCAGCCATAGTTACT
GAAAATTATGTCATCCCAACGGAAAGTGTAGACCTTTGCGAATCACCAAA
GTGGCGTGCGCTTAGAGAGGAAATGAGAGGACCACTGCTTGAGTGGAAAG
AAAACACAACTCTTGAAACTACAGTTGTACAGCTGACAGGAACCAAGACA
AACCGCGAAGATACAAAACGTCGTTTGTCAAAGTTTCTACAAGAGAACAC
TCTCTTGAATGCCACTCTTGCTGTTGACACAGGAACAAGTAGGTACCTGT
GGGAACATGAGAATGTGAAGCAAAAGGTCGAAGCCAAATTAAAACACAAA
AGAGTAAGCATCGTGCTAAATGAAGGAGTGGATAGGTTTGGAAAACCTGT
GAGTGGTTTTCTGGTAAGAGGAACAAGCGAAGGGAAGGATGAAGCGTGCA
GCCTTCTTCGTGAATATGCAGCAAAAGTGAAAACGAGAAGACATAAAGTT
GAAAAACCAGGTATGCGGCATTTCTTGACAGAGGGCACCGGGGGGGATTC
TATCAAGCTTATCGAGACTACGGAGAAATGTGTAATCGAACTTGAAAATG
TCAAAACAGAGAAACCTGGTGACGCCATCAGAGGACAGGAACAAAACACA
AGACAGATTTGCAACTATACCCGTAAAGATGGAAGAGACCTTGTTGTGTT
GTTGGGTGATTTGACATGTCATCATGTTGATGTCATGGTCAATGCTGCAA
ATCCTGAGCTCAAGCACAAGGGAGGTCTAGCGCATAAGATAGTTCTTAAA
GGTGGAAAAGAAATCCAAGAAGAATGTGCTGTTGAAGAAGATCGAAGGCC
AGTGACCCCACCACAGTCTCCTAAATTGGTACTCACAAAGGAACCGGTGT
CCATAAGCATCGATGATGAGCGTTACAAGTACATCACCAACAGTCATACT
TTCCAGCAAGAATTGGAGGCAAAAATTGACGAGATTGAGGGGGTGCTAGA
TCTAAGTGAGTCGGGAAAAGTAGAGGTTCGCCCACAACAAGAGCTCCCTG
AAACAGATTGGCCGGCATGGGAAACAAAATGCAGGACTGCACTAGAAGCC
ACCTTAGACAGTATCGCTGTAGTCAGGAAAGAGGTGCCAGCCAACTTATG
GGAAGCTGTAGCCGAGAAGAGTTCCAAATGCAGACAGCGTCATCAGTCTG
TTATGCTCAAGGAAGACAGAGCAGTAGGGGAACTTGTGATCGTAGGCCAC
GACAACAAGGCAGTCAGACAGGCAGACCAACTACTCAGTGTCGTCATAGA
AGAATGTATCAAGAAAAGTACTGAGGAAGTCGTTGAAGAAGAGTTTCATC
CTTCTAAGCTCAAGTTGATCCAAAAGACTGATATTCTTGAAGAAACAGAT
GACGTGAAGACTACAATTGATATTTCAACCGGACGAGTCACACTCAAAGG
ACACAAAGATGCAACAACCAAACTGATCAAAGCGATGTATAAAAAGATTA
GTGACTTTGAGCGACGTACTGTAGAGGTAGATGAACGTAAGAGGCGGATG
CTTATGTCAGAGTGTGGAGTTGGATATGTCCAAAGCCAATTTGCTGAATT
CAGTATCAGTGCTGAATACTACTATGACGGCAATGAGATAGTTTGCATTG
CTACAACAAAGAAGGATGCTGAGGCTGCATTGGCAGTGATTGAGCCAGCC
ATAGTTACTGAAAATTATGTCATCCCAACGGAAAGTGTAGACCTTTGCGA
ATCACCAAAGTGGCGTGCGCTTAGAGAGGAAATGAGAGGACCACTGCTTG
AGTGGAAAGAAAACACAACTCTTGAAACTACAGTTGTACAGCTGACAGGA
ACCAAGACAAACCGCGAAGATACAAAACGTCGTTTGTCAAAGTTTCTACA
AGAGAACACTCTCTTGAATGCCACTCTTGCTGTTGACACAGGAACAAGTA
GGTACCTGTGGGAACATGAGAATGTGAAGCAAAAGGTCGAAGCCAAATTA
AAACACAAAAGAGTAAGCATCGTGCTAAATGAAGGAGTGGATAGGTTTGG
AAAACCTGTGAGTGGTTTTCTGGTAAGAGGAACAAGCGAAGGGAAGGATG
AAGCGTGCAGCCTTCTTCGTGAATATGCAGCAAAAGTGAAAACGAGAAGA
CATAAAGTTGAAAAACCAGGTATGCGGCATTTCTTGACAGAGGGCACCGG
GGGGGATTCTATCAAGCTTATCGAGACTACGGAGAAATGTGTAATCGAAC
TTGAAAATGTCAAAACAGAGAAACCTGGTGACGCCATCAGAGGACAGGAA
CAAAACACAAGACAGATTTGCAACTATACCCGTAAAGATGGAAGAGACCT
TGTTGTGTTGTTGGGTGATTTGACATGTCATCATGTTGATGTCATGGTCA
ATGCTGCAAATCCTGAGCTCAAGCACAAGGGAGGTCTAGCGCATAAGATA
GTTCTTAAAGGTGGAAAAGAAATCCAAGAAGAATGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000143 | genome | Sc0000143:646259..648899 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84411_cuf1 |
| Biotype | protein_coding |
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