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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84325_cuf0 >transcript:BL84325_cuf0-protein ID=transcript:BL84325_cuf0-protein|Name=transcript:BL84325_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=328bp
MVHTCAAVGCHNRKNTGCPESFYRFPRDEPRRGRWIAAVKREDWLPTDSS
RLCSTHFISGKKSDDTLSPDYVPSLFAYVSSPVKRKRHRDFEIFQQRQKV
NIRRKEQAKTDQDAVSALHNPMASVSLPAQDTVASASSDPVSALLNPMAS
VSIPAQDTVASASSDPVEMDSRHTSGTGEKPVDYATECENLRLEKYRLRE
KIESLSLTEQVFMANSEKVKFYTGLPNYNVFNAVLTLISSHMTERRNTKL
SHFQQLLITLMKLRLNIFHQDLATLVFTCLPFQELYIKLWIFSMLNWYQL
PSSGLTEKNLEKHFPWLSEEGMENVWQS Run BLAST on NCBI mRNA from alignment at Sc0000125:341708..344247+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84325_cuf0 ID=transcript:BL84325_cuf0|Name=transcript:BL84325_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2540bp|location=Sequence derived from alignment at Sc0000125:341708..344247+ (Branchiostoma lanceolatum)
GGCCACGTTGGGTGGCATTGTGCACTCAAGGACATCTGTCAAACTTCCTC
GATTTACACACGTAGGTGATCGTGTCGCTGTATCTACACTTGTTTTGTGA
ACATGGTACACACTTGTGCTGCTGTCGGATGCCATAACAGGAAGAATACT
GGTTGTCCCGAGTCTTTCTATCGATTTCCGCGCGATGAACCGAGAAGAGG
AAGGTGGATTGCAGCCGTAAAACGGGAAGACTGGCTGCCAACCGATTCAA
GCAGGTTGTGTAGTACACATTTCATCTCAGGTAGGTAGCATCCATATTAT
GACACACGGTAAATTTTGACAACTTCATTGGTAGTTTTTTTAATGCGTGC
TTTGTTCGCGGAAACATTCGTGGTAAGAGAAATCCGGAGAAAAAAGATGC
CGTCTGCTACTTGTTTTCGTAACGTAATCCATCTAGAATGCCCCCCTCCC
CCAGATCGCTCACGAAGTGTGCTATGAAATATAATCTACACTCATTTAGC
TCCACTTTTAGAGATTACCGACGATCCGGAATCAGTTTAATAGAATTCAA
ATGCCGTGTGTAAGGTTCACGAGGATGTTGCTTGAAGTTGCCAGGCCTAT
TTTGGTGGCCGATGTGCCGGTAAACTCGTATTATAACTTATACTTTGCAC
TTTTTTTAAACTTGAAATACCTAGCCTAGACATGCTAAGAGTCTTCATAT
ACATATAAACAAATCTGGCACACATTTCAATGCTTTCATTTTCAACCCGG
AGGCCTCCTTATAGAAAAATTGATGTTCAGTATTTTTTTTTTCAGGAAAG
AAGAGTGATGACACATTATCGCCCGACTACGTTCCGTCACTTTTTGCATA
TGTATCATCGCCTGTAAAGAGAAAACGTCATCGTGACTTTGAAATATTTC
AACAGCGACAAAAGGTAAACATTCGAAGAAAGGAACAAGCCAAAACTGAT
CAGGATGCAGTGTCAGCTCTGCATAACCCCATGGCCAGTGTCAGCCTACC
AGCACAAGATACTGTGGCAAGTGCATCATCAGATCCAGTGTCAGCTCTGC
TTAACCCCATGGCCAGTGTCAGCATACCAGCACAAGATACTGTGGCAAGT
GCATCATCAGATCCAGTGGAAATGGACAGCAGGCACACCAGTGGCACCGG
TGAAAAGCCAGTTGATTATGCAACAGAGTGCGAAAATCTCAGACTTGAAA
AGTATAGACTTAGAGAAAAAATTGAATCGTTATCACTCACAGAGCAGGTA
TTCATGGCTAATAGTGAAAAGGTAAAATTTTACACCGGTCTGCCAAATTA
CAATGTATTTAATGCTGTTCTCACTTTGATATCATCGCACATGACAGAAC
GAAGAAATACTAAACTCTCACACTTCCAGCAGTTGTTGATAACACTGATG
AAGTTGCGATTAAACATTTTCCACCAGGACCTGGCTACTTTGGTGTTCAC
ATGTCTACCATTTCAAGAACTGTACATCAAGTTGTGGATCTTCTCTATGC
TTAACTGGTACCAACTGCCGTCATCTGGCCTGACAGAGAAGAACTTAGAA
AAACACTTCCCATGGCTTTCAGAGGAAGGTATGGAAAATGTGTGGCAATC
ATAGACTGTTTCGAGGTTACACTTGAGAAGTCCAGCGACCAAGAAGCTCA
GTCACAGACTTATTCCTCCTACAAATCAAGAAACATCTTGAAATACCTTA
TTGTATTGCACCACAAGGTGTGATAACCTTTATTTCAAAATGCTGGGGAG
GGAGAACCAGCGACAAGTCTATTACTGAAAAAAGTGGGTTTATAAAAAAA
CTGCTACCCGGTGATCAGGTACTTGCAGACCGGGGATTTGACATTGAAGG
CACCTTGGCCACATACGGAGCTTCATTATCAATTCCTCCATTTACAAGAG
GAAAAAAACAACTGAGTAAGAAAGACGTTGACTCAACAAGAGCATTAGCA
TCCCTTCGAATTCATGTGGAGCGTGTGATTGGAACTCTACGACAAAAGTA
CACTATGCTCAATGGCCCAGTAGAAATTCCCTACACAAATACAAACCCAA
ACTGTGACCTGACAACGTTTGACAAAATTGTTCAGGTGTCTTGTGCATTA
GGCAACCTATGTAATTCAGTTGTCCCGATTGAGTAATGAATTTTAAAATC
TGTGAGTGATTCCTCTGTTCATGCATCTGGCAGAATCCAATAGAAAGACT
CAGGGGTACCAGGATTCTTCCTACCAGTATTAGTGCTTCCCACAGCAACA
CAGGTGGGTACCATGCTGCTAAAATATATATACTAGTAGGTAGTACTAGG
TAATAAGGTACAGCTACATGATCACAAACTTGTGTAAATCAAGGAAAGAG
GTTAAGTGTTATGGTTCATAAAGAGAAACTACATGTAGCAATCATTGATA
TACTTATATGTACAGCATCAAACATGTTTATTGATATTAAACAGGAGCCT
AATGTGACAATAGAAAAATTCTGTCTCAATATACAGTATTATACATGTGT
ATCAAAAAATTACACTGTGAAAAAATTACCTGGTTTCAAC Coding sequence (CDS) from alignment at Sc0000125:341708..344247+ >transcript:BL84325_cuf0 ID=transcript:BL84325_cuf0|Name=transcript:BL84325_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1974bp|location=Sequence derived from alignment at Sc0000125:341708..344247+ (Branchiostoma lanceolatum)
ATGGTACACACTTGTGCTGCTGTCGGATGCCATAACAGGAAGAATACTGG
TTGTCCCGAGTCTTTCTATCGATTTCCGCGCGATGAACCGAGAAGAGGAA
GGTGGATTGCAGCCGTAAAACGGGAAGACTGGCTGCCAACCGATTCAAGC
AGGTTGTGTAGTACACATTTCATCTCAGGAAAGAAGAGTGATGACACATT
ATCGCCCGACTACGTTCCGTCACTTTTTGCATATGTATCATCGCCTGTAA
AGAGAAAACGTCATCGTGACTTTGAAATATTTCAACAGCGACAAAAGGTA
AACATTCGAAGAAAGGAACAAGCCAAAACTGATCAGGATGCAGTGTCAGC
TCTGCATAACCCCATGGCCAGTGTCAGCCTACCAGCACAAGATACTGTGG
CAAGTGCATCATCAGATCCAGTGTCAGCTCTGCTTAACCCCATGGCCAGT
GTCAGCATACCAGCACAAGATACTGTGGCAAGTGCATCATCAGATCCAGT
GGAAATGGACAGCAGGCACACCAGTGGCACCGGTGAAAAGCCAGTTGATT
ATGCAACAGAGTGCGAAAATCTCAGACTTGAAAAGTATAGACTTAGAGAA
AAAATTGAATCGTTATCACTCACAGAGCAGGTATTCATGGCTAATAGTGA
AAAGGTAAAATTTTACACCGGTCTGCCAAATTACAATGTATTTAATGCTG
TTCTCACTTTGATATCATCGCACATGACAGAACGAAGAAATACTAAACTC
TCACACTTCCAGCAGTTGTTGATAACACTGATGAAGTTGCGATTAAACAT
TTTCCACCAGGACCTGGCTACTTTGGTGTTCACATGTCTACCATTTCAAG
AACTGTACATCAAGTTGTGGATCTTCTCTATGCTTAACTGGTACCAACTG
CCGTCATCTGGCCTGACAGAGAAGAACTTAGAAAAACACTTCCCATGGCT
TTCAGAGGAAGGTATGGAAAATGTGTGGCAATCATAGATGGTACACACTT
GTGCTGCTGTCGGATGCCATAACAGGAAGAATACTGGTTGTCCCGAGTCT
TTCTATCGATTTCCGCGCGATGAACCGAGAAGAGGAAGGTGGATTGCAGC
CGTAAAACGGGAAGACTGGCTGCCAACCGATTCAAGCAGGTTGTGTAGTA
CACATTTCATCTCAGGAAAGAAGAGTGATGACACATTATCGCCCGACTAC
GTTCCGTCACTTTTTGCATATGTATCATCGCCTGTAAAGAGAAAACGTCA
TCGTGACTTTGAAATATTTCAACAGCGACAAAAGGTAAACATTCGAAGAA
AGGAACAAGCCAAAACTGATCAGGATGCAGTGTCAGCTCTGCATAACCCC
ATGGCCAGTGTCAGCCTACCAGCACAAGATACTGTGGCAAGTGCATCATC
AGATCCAGTGTCAGCTCTGCTTAACCCCATGGCCAGTGTCAGCATACCAG
CACAAGATACTGTGGCAAGTGCATCATCAGATCCAGTGGAAATGGACAGC
AGGCACACCAGTGGCACCGGTGAAAAGCCAGTTGATTATGCAACAGAGTG
CGAAAATCTCAGACTTGAAAAGTATAGACTTAGAGAAAAAATTGAATCGT
TATCACTCACAGAGCAGGTATTCATGGCTAATAGTGAAAAGGTAAAATTT
TACACCGGTCTGCCAAATTACAATGTATTTAATGCTGTTCTCACTTTGAT
ATCATCGCACATGACAGAACGAAGAAATACTAAACTCTCACACTTCCAGC
AGTTGTTGATAACACTGATGAAGTTGCGATTAAACATTTTCCACCAGGAC
CTGGCTACTTTGGTGTTCACATGTCTACCATTTCAAGAACTGTACATCAA
GTTGTGGATCTTCTCTATGCTTAACTGGTACCAACTGCCGTCATCTGGCC
TGACAGAGAAGAACTTAGAAAAACACTTCCCATGGCTTTCAGAGGAAGGT
ATGGAAAATGTGTGGCAATCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000125 | genome | Sc0000125:341708..344247 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84325_cuf0 |
| Biotype | protein_coding |
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