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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84216_cuf1 >transcript:BL84216_cuf1-protein ID=transcript:BL84216_cuf1-protein|Name=transcript:BL84216_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=400bp
PSCLTDTGSVKKLESSLISQRSPAETINTTTFQGDAHGNITISTGSGSTV
NVNSCPQGVQGQHRFTGVQECTIQKSSQNPQRNSRQHEKANRSLVPVLPK
SVGKPQRLNTKTQVSCRSYIDKLAQLSAEGKVTECHSTIDELLKTEKDPD
CQVSLRHAASLNAIYKGDFKKANHILRGTAALIPDTENGAEHRLWWSRLK
SVAKLRMGNYNMGIEFAKDGLCLLETVAPGCISAWLLTSHAWFLTKKAAG
QHEDEDKQYLVQKAEKDYLQAIENAESEHPKQMLYFQSRLPQFGKICLAL
LYLGCGESADSSKLEFFKDVSVDNIRKAKNLIAAVDEEGAVCNLSLFLLM
VAKTCLHYRLGSFQQAYDLALEAKDFATDNSFGGFVVIADSIAQYLKKYL Run BLAST on NCBI mRNA from alignment at Sc0000109:24010..26036+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84216_cuf1 ID=transcript:BL84216_cuf1|Name=transcript:BL84216_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2027bp|location=Sequence derived from alignment at Sc0000109:24010..26036+ (Branchiostoma lanceolatum)
CCCCGTCGTGCTTAACTGACACTGGGAGTGTAAAAAAATTGGTCTGTCTT
AAGCAAATTTGCTATCACAAATACAATGTTGTAATTGCAATTTTTTCACA
ACATTTTTAGATTGTTCTGGCAGATACATGTACCTGTTAAACATACTCAG
TTATTTGTTTTACTTTCACTTTCAGGAAAGTTCACTGATTTCACAAAGAA
GCCCAGCTGAAACCATCAATACAACAACTTTCCAAGGGGATGCACATGGC
AACATAACTATCAGTACTGGAAGTGGTAGTACTGTCAATGTCAATTCATG
TCCTCAAGGTGTACAAGGACAGCATCGCTTTACAGGAGTACAAGAATGTA
CAATCCAAAAGTCATCTCAAAATCCTCAAAGAAACAGTCGACAACATGAG
AAGGCAAACAGATCTCTCGTTCCAGTTTTGCCCAAATCTGTAGGTAAACC
CCAAAGGCTGAACACAAAAACACAAGTAAGCTGCCGTTCGTACATTGACA
AACTAGCCCAGCTGTCTGCGGAAGGGAAGGTCACGGAATGTCACAGCACC
ATTGACGAACTTTTGAAAACAGAAAAAGACCCAGACTGCCAAGTGTCCCT
CCGCCATGCAGCAAGTCTCAACGCTATCTACAAGGGAGATTTCAAAAAGG
CAAACCATATTCTTCGTGGTACTGCGGCACTTATCCCCGATACTGAAAAT
GGAGCGGAGCACCGGCTATGGTGGAGCCGTCTGAAATCTGTGGCAAAGTT
ACGGATGGGGAACTACAATATGGGAATTGAGTTTGCGAAGGATGGACTTT
GCCTGTTAGAGACGGTCGCACCTGGTTGTATCAGTGCATGGCTTCTCACC
AGTCATGCCTGGTTCCTGACCAAGAAGGCTGCAGGACAACACGAGGATGA
GGACAAACAATACCTCGTGCAGAAGGCAGAGAAAGACTACCTGCAAGCCA
TCGAAAATGCAGAAAGCGAGCACCCCAAACAGATGCTCTACTTCCAGTCA
CGACTGCCTCAGTTTGGCAAAATTTGCCTTGCTCTGTTGTACCTTGGGTG
TGGGGAGTCAGCAGATAGCTCAAAGCTGGAATTCTTCAAGGATGTCTCAG
TTGATAACATAAGGAAGGCCAAGAATTTAATTGCCGCAGTAGACGAGGAG
GGAGCCGTGTGTAATTTGTCATTGTTTCTCTTAATGGTGGCTAAAACCTG
TCTGCATTATAGGCTGGGAAGTTTCCAACAGGCCTATGACTTAGCCCTGG
AAGCCAAAGACTTTGCCACAGATAATTCTTTTGGAGGCTTTGTAGTCATT
GCAGACAGCATTGCCCAGTACTTAAAGAAGTATCTCTAAGTTGTACAGCG
CCTGCTTGCTTCCATTGTTATCTGGAATTCAAACCTGCCAGGTAACTGTA
AGACGGCGCGCAGCTGACCCATGACGGGCGCCGGGCTTCCTGATCTCCAA
GCAGATCTACACGGGGCGCGAAAATCGTAAATGCTAGCCAGAGAAGCTCC
AGCCGGCCCCGTAGGATCTGCACTAAGACGGGCCTGAACAAGGTTATTAA
CCGGCACGAGGAGGGGCAACCTATCCGAGTCTTGTTGTTTGTCATATCTT
GAGTTATGGCAGAAGCCATGGCGTCGTCCGGTGGATCGAGAAGTCTCTAC
ATAACGTCCTTACTTGGTCGCTGATTAGCGCTCGTAACGGTGAGACGACC
GAAACAAGTTTTGTTTCAAGCAGACACAGCGGAATGCAATTTGGTAGCAC
AGGGATTTCCCCTTGCCCGTCACAATCCCAATCTTTACTTTCCAGACATG
CTAGAATGGCATCTAGTTGAGTATCCCTAATTTCAAACTCCCAGATAGCA
CGGAAATTACGGCGGACTCTTTCCGTCCAACAGCGCTTGCTTGCTTCCAT
TGTTATCTGGAATTCAAACCTGCCGCCGGGTAACTGTGAGATGGTGCACA
GCTGACCCATGACGGGGGCTTCTCACGCCAGCACAATAGACGAATTCGTA
CGGCACAAACTGATTGCGTCATATGGG Coding sequence (CDS) from alignment at Sc0000109:24010..26036+ >transcript:BL84216_cuf1 ID=transcript:BL84216_cuf1|Name=transcript:BL84216_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2406bp|location=Sequence derived from alignment at Sc0000109:24010..26036+ (Branchiostoma lanceolatum)
CCGTCGTGCTTAACTGACACTGGGAGTGTAAAAAAATTGGAAAGTTCACT
GATTTCACAAAGAAGCCCAGCTGAAACCATCAATACAACAACTTTCCAAG
GGGATGCACATGGCAACATAACTATCAGTACTGGAAGTGGTAGTACTGTC
AATGTCAATTCATGTCCTCAAGGTGTACAAGGACAGCATCGCTTTACAGG
AGTACAAGAATGTACAATCCAAAAGTCATCTCAAAATCCTCAAAGAAACA
GTCGACAACATGAGAAGGCAAACAGATCTCTCGTTCCAGTTTTGCCCAAA
TCTGTAGGTAAACCCCAAAGGCTGAACACAAAAACACAAGTAAGCTGCCG
TTCGTACATTGACAAACTAGCCCAGCTGTCTGCGGAAGGGAAGGTCACGG
AATGTCACAGCACCATTGACGAACTTTTGAAAACAGAAAAAGACCCAGAC
TGCCAAGTGTCCCTCCGCCATGCAGCAAGTCTCAACGCTATCTACAAGGG
AGATTTCAAAAAGGCAAACCATATTCTTCGTGGTACTGCGGCACTTATCC
CCGATACTGAAAATGGAGCGGAGCACCGGCTATGGTGGAGCCGTCTGAAA
TCTGTGGCAAAGTTACGGATGGGGAACTACAATATGGGAATTGAGTTTGC
GAAGGATGGACTTTGCCTGTTAGAGACGGTCGCACCTGGTTGTATCAGTG
CATGGCTTCTCACCAGTCATGCCTGGTTCCTGACCAAGAAGGCTGCAGGA
CAACACGAGGATGAGGACAAACAATACCTCGTGCAGAAGGCAGAGAAAGA
CTACCTGCAAGCCATCGAAAATGCAGAAAGCGAGCACCCCAAACAGATGC
TCTACTTCCAGTCACGACTGCCTCAGTTTGGCAAAATTTGCCTTGCTCTG
TTGTACCTTGGGTGTGGGGAGTCAGCAGATAGCTCAAAGCTGGAATTCTT
CAAGGATGTCTCAGTTGATAACATAAGGAAGGCCAAGAATTTAATTGCCG
CAGTAGACGAGGAGGGAGCCGTGTGTAATTTGTCATTGTTTCTCTTAATG
GTGGCTAAAACCTGTCTGCATTATAGGCTGGGAAGTTTCCAACAGGCCTA
TGACTTAGCCCTGGAAGCCAAAGACTTTGCCACAGATAATTCTTTTGGAG
GCTTTGTAGTCATTGCAGACAGCATTGCCCAGTACTTAAAGAAGTATCTC
TAACCGTCGTGCTTAACTGACACTGGGAGTGTAAAAAAATTGGAAAGTTC
ACTGATTTCACAAAGAAGCCCAGCTGAAACCATCAATACAACAACTTTCC
AAGGGGATGCACATGGCAACATAACTATCAGTACTGGAAGTGGTAGTACT
GTCAATGTCAATTCATGTCCTCAAGGTGTACAAGGACAGCATCGCTTTAC
AGGAGTACAAGAATGTACAATCCAAAAGTCATCTCAAAATCCTCAAAGAA
ACAGTCGACAACATGAGAAGGCAAACAGATCTCTCGTTCCAGTTTTGCCC
AAATCTGTAGGTAAACCCCAAAGGCTGAACACAAAAACACAAGTAAGCTG
CCGTTCGTACATTGACAAACTAGCCCAGCTGTCTGCGGAAGGGAAGGTCA
CGGAATGTCACAGCACCATTGACGAACTTTTGAAAACAGAAAAAGACCCA
GACTGCCAAGTGTCCCTCCGCCATGCAGCAAGTCTCAACGCTATCTACAA
GGGAGATTTCAAAAAGGCAAACCATATTCTTCGTGGTACTGCGGCACTTA
TCCCCGATACTGAAAATGGAGCGGAGCACCGGCTATGGTGGAGCCGTCTG
AAATCTGTGGCAAAGTTACGGATGGGGAACTACAATATGGGAATTGAGTT
TGCGAAGGATGGACTTTGCCTGTTAGAGACGGTCGCACCTGGTTGTATCA
GTGCATGGCTTCTCACCAGTCATGCCTGGTTCCTGACCAAGAAGGCTGCA
GGACAACACGAGGATGAGGACAAACAATACCTCGTGCAGAAGGCAGAGAA
AGACTACCTGCAAGCCATCGAAAATGCAGAAAGCGAGCACCCCAAACAGA
TGCTCTACTTCCAGTCACGACTGCCTCAGTTTGGCAAAATTTGCCTTGCT
CTGTTGTACCTTGGGTGTGGGGAGTCAGCAGATAGCTCAAAGCTGGAATT
CTTCAAGGATGTCTCAGTTGATAACATAAGGAAGGCCAAGAATTTAATTG
CCGCAGTAGACGAGGAGGGAGCCGTGTGTAATTTGTCATTGTTTCTCTTA
ATGGTGGCTAAAACCTGTCTGCATTATAGGCTGGGAAGTTTCCAACAGGC
CTATGACTTAGCCCTGGAAGCCAAAGACTTTGCCACAGATAATTCTTTTG
GAGGCTTTGTAGTCATTGCAGACAGCATTGCCCAGTACTTAAAGAAGTAT
CTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000109 | genome | Sc0000109:24010..26036 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84216_cuf1 |
| Biotype | protein_coding |
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