|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84084_cuf7 >transcript:BL84084_cuf7-protein ID=transcript:BL84084_cuf7-protein|Name=transcript:BL84084_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=431bp
MENSRFLSYMKRTTLIKPCGFLLLATLLYVEISSISTNRSKSVPLRPAYY
SRNVSGEHGDEEVCSIKRNFMFVKVHKAGGTTTTCIFQRFGYEHNLTFVL
PVIRTDVGWPNLLRQEDFIPSADSTYNVLVDHTVYNRRLLKHLMPPDTMY
ISILRHPQAQLRSTFNWFGLAREIPGLEGADPVASFIQNAHKWHVPYVKA
YNRTREPYTLTKNFMAFDLGFPLGLSDDQSYVDEFIQKISREIDLVLILE
HFTESLVLLKRMMCWTLKDILYNVVPKNLRKYKKGRTSNATLQKHRQWSN
VDYQLYDHFNATLWQKIQDEGDDFVQEVHHFQKVLNETTIYCTNTIKKVP
VSEINVTARKVTIPKSAWNDEFDIDPILCLKLKMEWVDWEYVLKKKHKMP
PNLPVEVKRAIEYINPQVLGKTLLAKLFHVH Run BLAST on NCBI mRNA from alignment at Sc0000069:254193..257937- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84084_cuf7 ID=transcript:BL84084_cuf7|Name=transcript:BL84084_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3745bp|location=Sequence derived from alignment at Sc0000069:254193..257937- (Branchiostoma lanceolatum)
TATTTTTCCAAGCAAATCCGGAAAAATACAACATTTTATTTTTCCGGATA
CTGTTTAGGGTCGTATCGTAACTCCAGATATGTGTTTCTGTATGTATACG
GAGATATCCATTGTTACGATACTCCGGCAATCCATGTTGTATTTTGACTC
TGTCGTGACAGGTCAGATATCCTTCTGGGGTCATTCTCACGCGGCATGAA
GGCTGGTACAACACCGTAAAATCACAAAATATACAACATGTACAAATAAG
TCACACAAAAGACATGCACGTAGGAAATAAAACTTTACAAAACACTAAAA
ATGTTGGTCCATACATTGTTTGTATCAGACAAAACAACTTGCAACATGGC
AGAAATATGTCCCGTTTTCCGACAATACCAGTCTGGAACAAAACGTTTAG
AAAAACAAATTTAACATTTAGACATAGGCCCCGCTCCCATTCATTCACAG
CGATAGTATGAGTTAGCCACATAAATGCTATACAGTAAAACAGTTCCTAA
TTGCACACTGTCTGTTCCATCACTTTATTTCTGTACGTATTTACACCTCA
TTTCAAGCTTAGATTTAGCTGACTATATCAAAAGTGGATTGTGCTACACG
ATACGATTAACTAACACCACATGACACCACAATCAACATCAGAAAACATT
GGAGAATAAAATGCAGTAAGAATCTATATCTATTTTTTCAGGATCGTCAA
GATGGAAAACTCCAGATTCCTGTCCTACATGAAGAGAACGACGCTGATAA
AACCATGTGGTTTTCTTCTTCTGGCTACTCTTCTCTATGTCGAGATCAGC
TCCATTTCTACAAACAGGTCTAAGTCAGTCCCCCTCAGACCGGCATATTA
CAGCAGGTAACCAGCATTAACATAACTATCAGTAGACTAACGTACGAAGC
AGTAAGAAACAAATCACATGATATTCAGAGTCGGACTAATTTGGGCTATG
AATGCATCTTAACCCTATCTAGACGGGGGGGGGGGCTAAAAGTGCCCGCG
CCAACTTTGACATCGTATAACTGCCAAACGACGTATGGTAGGACACCCAA
ACTTGGTGACTTTTCCTAAAATTTAGTTGGCAACAATATAATGATAAAAG
TATAAGTTTAGCATTTTTCGTGTTGCCATGGCAACGGGTTTCTGAAGAGG
CATTTCATGCAAATTTCACTAATTTCGATAAAAACATGGTTGTTTCCAAT
GTTTTCTTGCTCAACCACACTAGTTTCCAACATGCATAACATCACATGTG
ATTGAACGTAACTGCCATGATTAAATATTCATAAATTATGCTAATTTGAT
GACGTCATCGCTCAAAATCCAAGATGGCAGACAAAATCATTATTTTCGGT
ATAAGCACGCTTTTTCGCCTTTAAATTCGTCACAACCTGGAATTTTCTTA
ACCAGAAACATTCAGATTGATGTTTTAAGTCTATGTTAATTGTTATTTGG
GTTCATACATGGAAAAAATGTACTTTTAAAAATTTCAAAATGGCCGATCC
AAGATGGCGGATCCCAGGGGGTCGCTAACAACACATGACGTCATTCTCCG
ACGTCATTTTGACGTCATCTTAGTCACAACAGACGTCAAATGTCTTGGCA
TACCTTTTAATCAATAATACGCACCATTTTGTCAAATATTTTTAGAAATT
ATGGGAATTCCCTATTTAGCCAATAAAATCACATCGATGACGTCATAATT
ACGTCATATTACGTCATAACGTCACTAAAATACACGAATTATAAAACTTC
ACGTGATCATCACTCCCTGCAAATTTGGTGATGATAGAGCTGACGGGGGG
GTCGAAAGAGCCCCCCCCCCCTGTCCAAGAAGTCCCAAAAAAGCCCAGTC
TAGATAGGGTTAAAGACATCTGCGTAGTCTTACTACAGTACTGTTCAACA
TTAACTTTCCAAGACTCCTTTGGTTTCTGTTTAACCAATACAGCAAGGAA
AGCCTGAAGTTTTTCCCCGCTCTTACTTTCTGCCACGTCCAAGGTAATTT
CAAAGGGCACTTTGCATACCCTAGTCTATCTAACGTATTGTGCGAAATGG
ATGAAATGTGACCTAAATTGAACTTAAATGCCTTCAGATATTCAAGGTGA
TCAAATCAACACATAACAAACAGATCCTCTTTTTTATTCCTTTATGATCA
GAAACGTTTCAGGGGAACATGGTGATGAAGAAGTCTGTAGCATCAAGCGA
AACTTCATGTTCGTGAAAGTGCACAAGGCCGGAGGCACGACAACAACCTG
CATCTTCCAACGCTTCGGTTACGAACACAACCTGACTTTCGTTCTGCCTG
TGATCAGGACTGACGTCGGCTGGCCCAACCTCCTGAGACAAGAAGATTTC
ATACCATCGGCAGACAGTACTTATAACGTGCTAGTCGATCACACAGTTTA
TAATAGGCGGTTGTTGAAGCATCTTATGCCTCCTGACACTATGTACATCT
CTATACTGAGGCATCCACAAGCCCAGCTCCGCTCTACTTTTAACTGGTTT
GGCCTTGCCAGGGAAATCCCAGGATTGGAAGGGGCGGATCCTGTTGCGTC
ATTCATTCAAAATGCCCATAAATGGCACGTCCCTTACGTCAAGGCATATA
ACCGTACACGAGAACCATATACCCTAACAAAAAATTTCATGGCGTTTGAC
CTTGGCTTTCCTCTCGGACTTTCTGATGACCAATCGTATGTTGATGAGTT
TATCCAAAAGATATCCAGAGAAATCGATCTGGTTCTTATTCTAGAACATT
TCACTGAATCCCTCGTCTTGCTGAAGCGGATGATGTGTTGGACATTAAAA
GACATTCTTTACAACGTCGTACCTAAAAACCTGCGGAAATATAAAAAAGG
AAGAACAAGTAATGCAACGCTACAGAAACACCGCCAATGGAGCAATGTAG
ATTATCAGTTGTACGATCACTTCAACGCGACGCTTTGGCAAAAGATTCAA
GATGAAGGTGATGATTTTGTACAAGAAGTGCACCACTTTCAGAAAGTACT
CAATGAAACGACTATCTATTGTACCAATACAATAAAAAAGGTACCAGTTT
CTGAAATAAATGTGACAGCTCGTAAAGTGACCATTCCAAAATCAGCTTGG
AATGACGAGTTTGACATAGATCCGATCCTGTGTCTAAAACTAAAAATGGA
ATGGGTTGACTGGGAATACGTCCTAAAAAAGAAGCACAAAATGCCACCAA
ACTTACCTGTCGAAGTCAAAAGGGCCATTGAATATATTAACCCCCAAGTT
CTGGGTAAAACACTACTAGCAAAACTTTTCCACGTGCATTAGGAACAGGT
CATACGATGGGCTTAAAACACATGACCCATATCAACAAACATTGAAAACA
TCATATAAAGCTATTCAAACGAAAAGTCATCTGTGTTGGTAGAATCTTTA
GTTGTGCAATTTAAGCTGTAGCCTTCCACGAGATAGAACTGTTCCTATAA
ATGTACGTTAAGAATATTTCACAAGCTCTACGGAGAATTGTAACACACAC
TGTATTAAAACATTTTTCAAACCAACCCTATAATTAAGACATAATATTGT
TAGTAATACCCAAAGATAAGACACACATAGTGCACAGGACAGAAGATCAG
GTGACCTTGTTCATTAAGACTTACGTAGGAAAACCAGAATGTTCGCTTAC
AGCCTATTACTTCTGAAGTGTTACAGCATATACATATGGAGTCCCCTGGA
CATAGTTACACTCGACAATCTGCGCAATTCGAAGCAGGACTCCAT Coding sequence (CDS) from alignment at Sc0000069:254193..257937- >transcript:BL84084_cuf7 ID=transcript:BL84084_cuf7|Name=transcript:BL84084_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=2592bp|location=Sequence derived from alignment at Sc0000069:254193..257937- (Branchiostoma lanceolatum)
ATGGAAAACTCCAGATTCCTGTCCTACATGAAGAGAACGACGCTGATAAA
ACCATGTGGTTTTCTTCTTCTGGCTACTCTTCTCTATGTCGAGATCAGCT
CCATTTCTACAAACAGGTCTAAGTCAGTCCCCCTCAGACCGGCATATTAC
AGCAGAAACGTTTCAGGGGAACATGGTGATGAAGAAGTCTGTAGCATCAA
GCGAAACTTCATGTTCGTGAAAGTGCACAAGGCCGGAGGCACGACAACAA
CCTGCATCTTCCAACGCTTCGGTTACGAACACAACCTGACTTTCGTTCTG
CCTGTGATCAGGACTGACGTCGGCTGGCCCAACCTCCTGAGACAAGAAGA
TTTCATACCATCGGCAGACAGTACTTATAACGTGCTAGTCGATCACACAG
TTTATAATAGGCGGTTGTTGAAGCATCTTATGCCTCCTGACACTATGTAC
ATCTCTATACTGAGGCATCCACAAGCCCAGCTCCGCTCTACTTTTAACTG
GTTTGGCCTTGCCAGGGAAATCCCAGGATTGGAAGGGGCGGATCCTGTTG
CGTCATTCATTCAAAATGCCCATAAATGGCACGTCCCTTACGTCAAGGCA
TATAACCGTACACGAGAACCATATACCCTAACAAAAAATTTCATGGCGTT
TGACCTTGGCTTTCCTCTCGGACTTTCTGATGACCAATCGTATGTTGATG
AGTTTATCCAAAAGATATCCAGAGAAATCGATCTGGTTCTTATTCTAGAA
CATTTCACTGAATCCCTCGTCTTGCTGAAGCGGATGATGTGTTGGACATT
AAAAGACATTCTTTACAACGTCGTACCTAAAAACCTGCGGAAATATAAAA
AAGGAAGAACAAGTAATGCAACGCTACAGAAACACCGCCAATGGAGCAAT
GTAGATTATCAGTTGTACGATCACTTCAACGCGACGCTTTGGCAAAAGAT
TCAAGATGAAGGTGATGATTTTGTACAAGAAGTGCACCACTTTCAGAAAG
TACTCAATGAAACGACTATCTATTGTACCAATACAATAAAAAAGGTACCA
GTTTCTGAAATAAATGTGACAGCTCGTAAAGTGACCATTCCAAAATCAGC
TTGGAATGACGAGTTTGACATAGATCCGATCCTGTGTCTAAAACTAAAAA
TGGAATGGGTTGACTGGGAATACGTCCTAAAAAAGAAGCACAAAATGCCA
CCAAACTTACCTGTCGAAGTCAAAAGGGCCATTGAATATATTAACCCCCA
AGTTCTGGGTAAAACACTACTAGCAAAACTTTTCCACGTGCATTAGATGG
AAAACTCCAGATTCCTGTCCTACATGAAGAGAACGACGCTGATAAAACCA
TGTGGTTTTCTTCTTCTGGCTACTCTTCTCTATGTCGAGATCAGCTCCAT
TTCTACAAACAGGTCTAAGTCAGTCCCCCTCAGACCGGCATATTACAGCA
GAAACGTTTCAGGGGAACATGGTGATGAAGAAGTCTGTAGCATCAAGCGA
AACTTCATGTTCGTGAAAGTGCACAAGGCCGGAGGCACGACAACAACCTG
CATCTTCCAACGCTTCGGTTACGAACACAACCTGACTTTCGTTCTGCCTG
TGATCAGGACTGACGTCGGCTGGCCCAACCTCCTGAGACAAGAAGATTTC
ATACCATCGGCAGACAGTACTTATAACGTGCTAGTCGATCACACAGTTTA
TAATAGGCGGTTGTTGAAGCATCTTATGCCTCCTGACACTATGTACATCT
CTATACTGAGGCATCCACAAGCCCAGCTCCGCTCTACTTTTAACTGGTTT
GGCCTTGCCAGGGAAATCCCAGGATTGGAAGGGGCGGATCCTGTTGCGTC
ATTCATTCAAAATGCCCATAAATGGCACGTCCCTTACGTCAAGGCATATA
ACCGTACACGAGAACCATATACCCTAACAAAAAATTTCATGGCGTTTGAC
CTTGGCTTTCCTCTCGGACTTTCTGATGACCAATCGTATGTTGATGAGTT
TATCCAAAAGATATCCAGAGAAATCGATCTGGTTCTTATTCTAGAACATT
TCACTGAATCCCTCGTCTTGCTGAAGCGGATGATGTGTTGGACATTAAAA
GACATTCTTTACAACGTCGTACCTAAAAACCTGCGGAAATATAAAAAAGG
AAGAACAAGTAATGCAACGCTACAGAAACACCGCCAATGGAGCAATGTAG
ATTATCAGTTGTACGATCACTTCAACGCGACGCTTTGGCAAAAGATTCAA
GATGAAGGTGATGATTTTGTACAAGAAGTGCACCACTTTCAGAAAGTACT
CAATGAAACGACTATCTATTGTACCAATACAATAAAAAAGGTACCAGTTT
CTGAAATAAATGTGACAGCTCGTAAAGTGACCATTCCAAAATCAGCTTGG
AATGACGAGTTTGACATAGATCCGATCCTGTGTCTAAAACTAAAAATGGA
ATGGGTTGACTGGGAATACGTCCTAAAAAAGAAGCACAAAATGCCACCAA
ACTTACCTGTCGAAGTCAAAAGGGCCATTGAATATATTAACCCCCAAGTT
CTGGGTAAAACACTACTAGCAAAACTTTTCCACGTGCATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000069 | genome | Sc0000069:254193..257937 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84084_cuf7 |
| Biotype | protein_coding |
|
