transcript:BL84024_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84024_cuf0
Unique Nametranscript:BL84024_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84024_cuf0

>transcript:BL84024_cuf0-protein ID=transcript:BL84024_cuf0-protein|Name=transcript:BL84024_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=103bp
MSRPSSGGSGNRVTPGEVSPELPPVEIVYPSAVRPGAWAANMSGSYTVTG
DLAGMENGAMEMQESPGKPSVVDIDDPGPPGPGKEPDGALRRWESAEALN
ISL
Run BLAST on NCBI

mRNA from alignment at xfSc0000252:6901..7330+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84024_cuf0 ID=transcript:BL84024_cuf0|Name=transcript:BL84024_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=430bp|location=Sequence derived from alignment at xfSc0000252:6901..7330+ (Branchiostoma lanceolatum)
TACCTTTACACGGCCAGGGACACGCCCTGATGGCAAACAATATACCAGGT TCTGGTAAATAATTTACGCCCAGTAAACACTCAGTGATACCACATATCAT CGTGGACCGTTTCAGGCTGATGAGCAGACCGAGCTCGGGAGGATCGGGAA ATCGCGTGACCCCAGGAGAGGTTAGTCCGGAACTCCCCCCGGTGGAGATC GTGTACCCGTCCGCCGTACGTCCAGGCGCTTGGGCCGCCAACATGTCGGG GTCCTACACGGTAACGGGCGACCTAGCCGGGATGGAAAACGGCGCCATGG AGATGCAAGAGTCGCCTGGCAAGCCGTCAGTGGTCGACATCGACGATCCC GGGCCTCCGGGCCCGGGGAAGGAGCCGGACGGAGCGCTGAGGCGGTGGGA GAGTGCGGAGGCGCTGAACATATCTCTACA

Coding sequence (CDS) from alignment at xfSc0000252:6901..7330+

>transcript:BL84024_cuf0 ID=transcript:BL84024_cuf0|Name=transcript:BL84024_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=309bp|location=Sequence derived from alignment at xfSc0000252:6901..7330+ (Branchiostoma lanceolatum)
ATGAGCAGACCGAGCTCGGGAGGATCGGGAAATCGCGTGACCCCAGGAGA
GGTTAGTCCGGAACTCCCCCCGGTGGAGATCGTGTACCCGTCCGCCGTAC
GTCCAGGCGCTTGGGCCGCCAACATGTCGGGGTCCTACACGGTAACGGGC
GACCTAGCCGGGATGGAAAACGGCGCCATGGAGATGCAAGAGTCGCCTGG
CAAGCCGTCAGTGGTCGACATCGACGATCCCGGGCCTCCGGGCCCGGGGA
AGGAGCCGGACGGAGCGCTGAGGCGGTGGGAGAGTGCGGAGGCGCTGAAC
ATATCTCTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84024gene:BL84024Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84024_cuf0-E1BL84024_cuf0-E1-1564476830-515439Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84024_cuf0transcript:BL84024_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0000252genomexfSc0000252:6901..7330 +
Properties
Property NameValue
Transcript idBL84024_cuf0
Biotypeprotein_coding