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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83621_cuf4 >transcript:BL83621_cuf4-protein ID=transcript:BL83621_cuf4-protein|Name=transcript:BL83621_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=132bp
PVSRSIPANEESSSQAIQKEDNQAATAPSDEHSKHTGKNPYRCEECSKCL
SDSHALKEHMHTHTGEKPYRCEECSRVFSRPNHLARHMKKKHVSQHLGVE
ASAASREELGIEASAASRELLIYEAHEVEVSF Run BLAST on NCBI mRNA from alignment at Sc0000009:5367130..5372501+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83621_cuf4 ID=transcript:BL83621_cuf4|Name=transcript:BL83621_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5372bp|location=Sequence derived from alignment at Sc0000009:5367130..5372501+ (Branchiostoma lanceolatum)
CCAGTATCACGGTCTATACCAGCCAATGAGGTGAATGATTTGTACTTAAA
CATAACAGTCTTGATTGAATATCTAAATTGTAATGATGGTATTCAGAAAA
AAATAGTCAGCAACTGATTTTAGTCAATAAGATACTGTTAAAAATGCATG
CCCAGGATTTGAGATATATTTATTACATTTAGGATGGTATTCAATACCTG
GCTGTATGCTTTAGGGTTTATGTTTGTATTTTATTCTTTTTTTTTGTAAG
GAATCCTCATCACAAGCAATTCAGAAGGAAGACAACCAGGCTGCTACAGC
ACCATCTGATGAGCACAGCAAACACACTGGGAAGAATCCCTACAGGTGTG
AGGAATGCAGCAAGTGTCTCAGCGATTCTCATGCCCTGAAGGAACACATG
CACACTCACATAGGTGAGAAACCCTACATGTGTGGGGAGTGCAGCAAGCG
ATTCAGTGTGCTGGGAAATCTAAAGCAACACATGCACACTCACACAGGGG
AGAAACCCTTTAGGTGTGAGGAGTGCAGCAAGCAGTTCCATTCGAAGCGT
AATCTGAGGAGACACATGGAGATTCACACAAGGAGCAAGCCTTACAAGTG
TGAGAAATGTAGCAGTCAGTTCAGTAAGCCACATGAGCTGAAGAAACACC
TGTACACTCACACAGAGGAAAATCTCCACAGATGTGAGGAGTGCAGCAAA
GAGTTCATTGAGAGGAAGCATCTAAAGGAACACATGCTAACTCACTCCGG
AGAAAAGCCCTACTCGTGTAAGGAGTGCAGTAAGCAGTTCAGAAGGCCAG
ATAATCTGAAGAGACACATGCGTACTCATACAGGTGAGAAACCCTACATG
TGTGAGGAGTGCAGCAAGCGATTCAGTCATCCGGGAAATCTGAAGCAACA
CATGCGCACTCACACGGAGGAGAAACCCTATAGCTACAGGTATGAGAAGA
GCAGCAGGCAGGTCAGTGTGCCTAGTCATCTAAAGACACACACACAGACT
TGCACAGAGGAGATAAGCAGCATTTCTGAGTCAACAAAAATGATGGAGAC
AAGCACAAGTACAACAGCAGACTTTCCTGCACCACAACACGCAACAAATA
CGCCTGCAAAGCCGTCTGCTGACCAGAATAGAGCTCGTACCTCCGCAGAA
AGGGGACAGTCTGAGAGTGAAGTCAGATCTGTAGCTGTTAGTCCTTCCAC
CATCTTGAATTCAGTGCAAGGCTCTCAAGTGCTTGCAACGGAGGTTCCTC
TGGTGACCGTCACCACATGCCCCCCTCCCACTGAGAGGATGGAACAGAGT
GGAGGAAAGGAGCAGGAAATTATGGACGGGAAAAATGAACCAGGTGACAT
GATAGAAGAAGGGATGGGAGGTGACAGTGACGGTTGCGGGGATGAGGACA
TCTCACAAGAAGATGAAGAAGCAGCACAGGACCAAGTAACACTGTCTATA
CCAGACAACCAGGCTGCTACAGCACCATCTGATGAGCACAGGAAAGACAT
TGGGAAGAATCCCTACAGGTGTGAGGAATGCAGCAAGTGTCTCAGGGATT
CTCGTGCCCTAAAGCAACACATGTACACTCACACAAGGGAGAAACCCTTC
AGGTGTGAGGAGTGCAGCAAAGAGTTCCCTTCGAAGCGTAATCTGATGAG
ACACATGGAAATTCACACAAGGAGCAAACCTTACAAGTGTATGAAATGTA
GCAGTCAGTTCAGTAAGCCACATGAGCTGAAGAAACACATGTACACTCAC
ATAGGGAAAAAACTCCACAGATGTGAGGAGTGCAGCAAAGAGTTCATTGA
GAGAAAGCATCTAAAGGAACACATGCTGACTCACTCCGGAGAGAAGCCCT
ACTCGTGTAAGGAGTGCAGCAGGCAGTTCAGAAGGTCAGATAATCTGAAG
CAACACATGCGTACTCATACAGGTGAGAAACCCTTCACGTGTGAGGAGTG
CAGCAAGCGATTCATTGAGCTGAGAAATCTGAAGCAACACATGCGCACTC
ACAAGGAGGAGAAACCCTACAGGTGTGAGAAGTGCAGCAGGCAGTTCAGT
TTGCGTAGTCATCTTATGACACACACACCGACTTGCACAGGGGAGATTAG
CAGCATTTCTAAGTCAACAAAAATGCTGGAAGCAAGCACAAGTACAACAG
CAGACTTTCCTGCACCACAACACGCAACAAATACACCTGCAAAGCCATCT
GCTGACCAGAATAGAGCTCGTACCGCTGCAGAAAGGGGACAGTCTGAGAG
TGAAGTCAGATCTGTAGCTGTTAGTCCTTCCACCATCTTGAATTTGGTGC
AAGGCTCTCAAGTACTTGCGACGGAGGTTCCTCTGGTGACCATCACCACA
TGCCCCCCTCCCACTGTGAGGATGGAACAGAGTGGAGGAAAGGAGCAGGA
AATTATGGACGGGAAGAATGAACCAGGTGACATGATGGAAGAAGGGATGG
GAGGTGACAGTGACGGTTGCGGGGATGAGGACATCTCACAAGAAGATGAA
GAAGCAGCACAGGACCAAGTAACACTGTCTATACCAGACAACCAGGCTGC
TACAGCACCATCTGATGAGCACAGGAAAGACATCCTACAGGTGAATCCCT
ACAGGTGTGAGGAATGCAGCAAGTGTCTCAGTAGTTCTCGTTCCCTGAAG
GAACACATGCACACTCACACAGGGGAGAAACCCTTCAGGTGTAAGGAGTG
CAGCAGTGAGTTCCCTTCGAAGCGTAATCTGATGAGACACATGGAGATTC
ACGTAAGGAGCAAACCTTACAAGTGTGAGGAATGTAGCAGTCAGTTCAGT
AAGCCTCATGAGCTGGAGAAACATATGTACACTCACATAGGGAAAAAACT
CCACAGATGTGAGGAGTGCAGCAAAGAGTTCATTGAGAGGAAGCATCTAA
ATCAACATGTGAAGACTCACTCCGGAGAGAAGCCCTACTCGTGTAAGGAG
TGCAGAAGGCAGTTCAGAAGGCCAGATAATCTGAAGCAACACATGCTTAG
ACAGCACATGAGCACTCACACAGGGGAGAATCCCTACAACTGTACGGTGT
GCAGCCGGCAGTTCAGGTCGCCACTTCTTTTGAGGCAACATATGTACACT
CACACGAGGGAAAAGCTCTACATGTACAGATGTGAGGAGTGCGGCAAGCA
GTTCAATAGGAAGGGTAATCTGAACAGACACAAGCAAACTCACAGTGAGA
CTGCAGCTTGCATACATGTATGTGAAAAGTGTGGCATGCAATTACGTTCA
TTGGGTTCTCTCAAGTGTCACCTGCAGACTCACGGTCCCAGGGAGAAATC
TTACAGGTGTGAGACGTGCGATATGCGGTTTTATACTCGACGCTATCTAA
AAAATCACTTAAAGATTCATACGGGTGAAAAGCCCTACATGTGTGACAAG
TGCAGCAAGCAGTTCATAAGGCAGGGTGATCTGAAGAGTCACATGTGGAC
CCACACAGAAGAGAAACCCCACAGGTGTGGGAATTGCGGCAGGCAGTTCA
AACAGCTGTGTCAGCTGAAGAGACACATGCTAATTCACACGGGGGAGAAA
CCCTACACGTGTAAGGAGTGCCAAAGACCATTCAGGCAGTGGAGTGCTCT
GAAGTTGCACATGCACACTCACACAGGTGAGAAACCTTACAGGTGTGAGG
AGTGCAGCCGGGTGTTCAGTCGTCCTAATCACCTGGCAAGACACATGAAA
AAGAAACATGTTTCCCAACATTTGGGAGTTGAAGCAAGTGCAGCAAGTAG
AGAAGAGCTGGGAATTGAGGCAAGTGCAGCAAGTAGAGAACTCCTGATCT
ATGAGGCACATGAAGTTGAAGTCAGCTTTTGACGTACTGTAGAAAAGTAG
TCATTTGTCTGTTGTGGGCCAGCACAGAGGATGAACAAAGTAATGTAGTT
GATATCATTACTGATGAGAAGTTGGACCTTTGATTTGAACCTACATAAAC
TTCTCGTGTGTTTTGGACAATGTCGATGATTTTTAAAAACATACATATGC
TAAACATAGCTAATCTAGCATTCCCTTGTAATAAGGGTGAAGAGTTGCCC
TTTGGGAAAACAGTCATGTAATTAAACTGTTTTCCATTTAGCTTTGTAGA
ATTGATTGCATATTATTATGAGGTTTTGTAGAACTTTCCTTGCCAGGTTA
GTTACTGATGATGTGGTTACTGATGATGAAGTTTATGTTTCTATTCTTTT
GCTTCAATCTATATATGGCTGGACTATCTGCAAATCTTCTCTTTGGGAGG
TACATGATGTACATTATAATTTGCCTTGTTGATAAGCTAATGCTTGTCAA
TTAACATTTGTTGCTGCAAGGGAGGACAATATTGGTATTTTTTTTGATAA
GATTGCTTAGTGCAAGGCCAAGAGACCTCTTCTGGGCCATGAACTTAATA
GGGAGATACAAGTTACTAGTACTATTCTAGAGAGAAGATGATGGTGAGCT
TTGGTTTTGGAAGCTTGACTTGAGGGTTGCATTTGAGAGGGGGAGAGGTA
CCTTTTGATAAACACTCTCTCTTGTTTTGTTGTAAATCAACAGCTTAAGT
GGAGGTACATGTAGGTACAAACATGTGTATGTATAGATAATTGGAGTTAG
GCTGCTGTTGTGACTGTAATTGTACCAAATTGTGTTTTCTACAATAATGT
AACAGTTGTAGAGTCTTACATTTGCATAAAGCTTCATTGAAAATAAAACT
ACGTTTTGATGCACATGGTATCAATATTGACAAACTGCTTTTCAAGACAA
AAAAGTAATTAAATAAATGGAAATAGATCCCTCCCACCCTTTCTTTCTGG
ACTTAAAATTATGTGTTCCTCTATCAGAATCACACCATATGCATGTCATG
CATGGTGTTAATTACTGCATGCAGAAGACTGACGCTTATACTGTTATAGA
TTGATACATCTTCACAGAGATTGACATTTTAGAACATGAAAGAATCTTTC
AAACTAATTAAAGTACACTGTACACACAACAGGGTTTTGTAACAACAAGT
TTTTATTTTTCCACAAACCTTAAGGGACGGTATTCAATATTACATGCCAC
AAAGAAATTGAGAAGCATTGAACAGTACTAATTGGACTTGTATATTTACA
GAAAATATATGATATCTCTACAGTATGTAGCAGCAAAAGCACACAACAAC
TTCAAAACAATGGCTTTATATACTCCCAAACATTCCTGTGATAACACCTT
TCCAACCCCACTTTCCCTGAAGTCACATAACAAAATTTACTTGTTCAAGT
TCAAATCTATGACTTGTTTGTTTGGATATTCAAGAAAGATGTCTCTCTTT
TATTTCTTAATCAGTAGACAATAGTTCACTTGTATTGTCAGACTATGAAG
ACTTATTAAAATTATATCAAAA Coding sequence (CDS) from alignment at Sc0000009:5367130..5372501+ >transcript:BL83621_cuf4 ID=transcript:BL83621_cuf4|Name=transcript:BL83621_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1197bp|location=Sequence derived from alignment at Sc0000009:5367130..5372501+ (Branchiostoma lanceolatum)
CCAGTATCACGGTCTATACCAGCCAATGAGGAATCCTCATCACAAGCAAT
TCAGAAGGAAGACAACCAGGCTGCTACAGCACCATCTGATGAGCACAGCA
AACACACTGGGAAGAATCCCTACAGGTGTGAGGAATGCAGCAAGTGTCTC
AGCGATTCTCATGCCCTGAAGGAACACATGCACACTCACACAGGTGAGAA
ACCTTACAGGTGTGAGGAGTGCAGCCGGGTGTTCAGTCGTCCTAATCACC
TGGCAAGACACATGAAAAAGAAACATGTTTCCCAACATTTGGGAGTTGAA
GCAAGTGCAGCAAGTAGAGAAGAGCTGGGAATTGAGGCAAGTGCAGCAAG
TAGAGAACTCCTGATCTATGAGGCACATGAAGTTGAAGTCAGCTTTTGAC
CAGTATCACGGTCTATACCAGCCAATGAGGAATCCTCATCACAAGCAATT
CAGAAGGAAGACAACCAGGCTGCTACAGCACCATCTGATGAGCACAGCAA
ACACACTGGGAAGAATCCCTACAGGTGTGAGGAATGCAGCAAGTGTCTCA
GCGATTCTCATGCCCTGAAGGAACACATGCACACTCACACAGGTGAGAAA
CCTTACAGGTGTGAGGAGTGCAGCCGGGTGTTCAGTCGTCCTAATCACCT
GGCAAGACACATGAAAAAGAAACATGTTTCCCAACATTTGGGAGTTGAAG
CAAGTGCAGCAAGTAGAGAAGAGCTGGGAATTGAGGCAAGTGCAGCAAGT
AGAGAACTCCTGATCTATGAGGCACATGAAGTTGAAGTCAGCTTTTGACC
AGTATCACGGTCTATACCAGCCAATGAGGAATCCTCATCACAAGCAATTC
AGAAGGAAGACAACCAGGCTGCTACAGCACCATCTGATGAGCACAGCAAA
CACACTGGGAAGAATCCCTACAGGTGTGAGGAATGCAGCAAGTGTCTCAG
CGATTCTCATGCCCTGAAGGAACACATGCACACTCACACAGGTGAGAAAC
CTTACAGGTGTGAGGAGTGCAGCCGGGTGTTCAGTCGTCCTAATCACCTG
GCAAGACACATGAAAAAGAAACATGTTTCCCAACATTTGGGAGTTGAAGC
AAGTGCAGCAAGTAGAGAAGAGCTGGGAATTGAGGCAAGTGCAGCAAGTA
GAGAACTCCTGATCTATGAGGCACATGAAGTTGAAGTCAGCTTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000009 | genome | Sc0000009:5367130..5372501 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83621_cuf4 |
| Biotype | protein_coding |
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