transcript:BL83409_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83409_cuf0
Unique Nametranscript:BL83409_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83409_cuf0

>transcript:BL83409_cuf0-protein ID=transcript:BL83409_cuf0-protein|Name=transcript:BL83409_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=104bp
KVHSSFTNYVLSRMEVTMAGGKLSLGFFAFLCVKLLCWRQCDAEGYYLYR
PRNPKLRPVLYDTRSSQSRSLTRAGTAPNQLSPPSPQGRSSYYVVSSPSN
SRAR
Run BLAST on NCBI

mRNA from alignment at Sc0000002:2679810..2680123+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83409_cuf0 ID=transcript:BL83409_cuf0|Name=transcript:BL83409_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=314bp|location=Sequence derived from alignment at Sc0000002:2679810..2680123+ (Branchiostoma lanceolatum)
GCAAGGTTCATTCATCATTCACTAATTATGTACTCTCACGCATGGAGGTA
ACAATGGCTGGAGGGAAGCTTTCTCTTGGATTTTTCGCCTTCCTTTGCGT
CAAGCTGCTATGCTGGCGGCAGTGCGATGCAGAAGGGTACTATCTGTATC
GACCCCGCAACCCGAAATTGCGTCCAGTCCTGTATGATACGCGCTCGTCA
CAGTCACGTTCCTTAACGAGAGCTGGCACCGCACCCAATCAACTGTCACC
TCCCTCTCCTCAAGGTCGTTCTTCATATTATGTAGTGTCCTCACCGTCCA
ACTCTAGAGCTAGA

Coding sequence (CDS) from alignment at Sc0000002:2679810..2680123+

>transcript:BL83409_cuf0 ID=transcript:BL83409_cuf0|Name=transcript:BL83409_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at Sc0000002:2679810..2680123+ (Branchiostoma lanceolatum)
AAGGTTCATTCATCATTCACTAATTATGTACTCTCACGCATGGAGGTAAC
AATGGCTGGAGGGAAGCTTTCTCTTGGATTTTTCGCCTTCCTTTGCGTCA
AGCTGCTATGCTGGCGGCAGTGCGATGCAGAAGGGTACTATCTGTATCGA
CCCCGCAACCCGAAATTGCGTCCAGTCCTGTATGATACGCGCTCGTCACA
GTCACGTTCCTTAACGAGAGCTGGCACCGCACCCAATCAACTGTCACCTC
CCTCTCCTCAAGGTCGTTCTTCATATTATGTAGTGTCCTCACCGTCCAAC
TCTAGAGCTAGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83409gene:BL83409Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83409_cuf0-E1BL83409_cuf0-E1-1564476830-34228Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83409_cuf0transcript:BL83409_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:2679810..2680123 +
Properties
Property NameValue
Transcript idBL83409_cuf0
Biotypeprotein_coding