transcript:BL83357_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83357_cuf0
Unique Nametranscript:BL83357_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83357_cuf0

>transcript:BL83357_cuf0-protein ID=transcript:BL83357_cuf0-protein|Name=transcript:BL83357_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
MEGRYNMKSPAVKRLMREAKEMHEPTEQYYAQPLEDNLFEWHFTVRGPPD
SDFQGGMYHGRITLPPEYPMKPPSIMLLTPNGRFETGKKICLSISGHHPE
TWQPSWSIRTVLLAIIGFMPTKGAGAIGSLDYTPEERKILSRK
Run BLAST on NCBI

mRNA from alignment at Sc0000678:449..3279-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83357_cuf0 ID=transcript:BL83357_cuf0|Name=transcript:BL83357_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2831bp|location=Sequence derived from alignment at Sc0000678:449..3279- (Branchiostoma lanceolatum)
TTTTTCAAGCCCTCACATCAGCCTTTAAGTCACCAGAAATTGATAAAGCG
AAACGGGATATCCGTGAATCGTGAGTTCCCAATGATCTGCTACTTAAAAC
GAATGAAACACAGGTTACAAATGGTGAGCTAGTTTTTTTCCTAGACGAGT
CTATCAGACTGCGAATGGGAGTGAATATCTGATTGGTTGAAATATCGGCA
ATTTCACTCAGAGCACCAATCAACGGACGTATTACATCCTTTATCGAATA
CGTGTCCAAAACAGGTCAACTTCCGGGTTTTAATGTACGTGTACACTTCA
GATCAATCTTATCTCAATCTTTCGGCTCTACATTCACAAACCCGACAGAA
TTCTGCATAATTTCAGGACGAGTGAACAGAACTTACGGCCTCAAAGATGG
AGGGACGATACAACATGAAAAGTCCAGGTAAATCGGCGAGTTACAAATTA
TGGGGGAGGGGGGCGGTAGTCATGGATTCTATCATATTTCAAAGTGTCAT
ATTTCTTAAGTTTCAAGCACAAACTTGTAGGTATACGAATGTCGAGGCAG
ATACATTATTACCAGGAGAAATATTATCACACTGATTTGGCGGTATTTCC
GCAGAAAAATGACATTTGTCTTTTGATATATTTAATCATAATTTGTTGAA
ATCTAACAAGTATAATGTAGCTATTTTCAATCAAATTACTAGAGTAATTT
GCTGGTCTACATATGTCCATATGTTAGCATTGGTACTTTGGGAATAATAA
TAATGTCTACACTAGATATCTATACCTCCAGGCATAGAACACTTGAAACA
TGACATTCTACCATGTGATTATTTACAAATACAGATTGTTTACTTCTTTA
AATCATTTTCGCTCACAGCTGTGAAGCGGTTGATGAGGGAGGCTAAAGAA
ATGCACGAACCAACAGAACAGTATTACGCCCAACCACTGGAGGTGAGGTT
TCATTGGAAAAATCTGTCGTAATGTATAGTTCTAAGCACAGCTAGATGTG
ATTGTGAGTAAGTTGGTCTTGTTGTTGACTTAGAACCTAATAAAGGGTAT
GTGTTCGAATCCCAAGTAAACCCCAAATGTTGTACCCTTGGGAAAGGTAC
TTAACACCTATTTCCTCACTCGACTCATAATATAATATTATAGCTTTATT
TTAGACTGTCAACAGCTTGTTCATTGGTTGCCCTATAAAAAATGTGATTT
GACTATAGAGTACAATAGTTTTCAAACATCGCTTTGCAAATACATGTACG
AGTACAGGATTTGTCACATTTTCTACAGTTGTATTATGCCACTCAAAGTT
ATATAAACAAGGCTATGGTAGTGTTTTGTTTAATATGTTGTGTGGTGATT
TTTGTTTTCAGGACAACTTGTTTGAATGGCACTTCACTGTCCGTGGTCCG
CCTGACTCTGACTTCCAGGGTGGGATGTACCACGGGCGCATCACTCTCCC
GCCCGAGTACCCCATGAAACCTCCCAGCATCATGCTTCTCACTGTAAGTA
CATTATGTAACACTAGTACTAATAGCTTGATAAGTATGTCTACACCCCTA
ATATGTGGCTAGATTTTAGTGTGTTATGATTAATGCATATGTGTTTTTGA
AGTCTAAGGGTGGATATTGGTACACTGATACTGGACTGTAAAATCACTAT
GTCTTTGAACTGGTAAGAAAACAACTTTGGTGGACCAGTGTTGGAACTGA
ATCAAAAGAAACTCTACTTATACTTGAATATAGACCCTTTCCAAACTCCG
GAGCCATTTTGAGATCTGCTCTTGCAAGAGCATAATCTGATGTGAACGCA
AATGTGATTTTGGGCAACTCTTATTCTGCGACCTGTTGTTGCAATGGTGT
CCCAATGTTATAATAGCAAGCGGCAGTGTGTTATCTTCAGTGGCAAGTTT
TGCTCCTCCTTGGTGAGATTTTCTGGTTCATCCAATACACACAAAGACCA
AAGCAAAGAAGATGTATTAAAGGTCTTTCCTACATTTCTGTTTTCCTGCT
GGACTTGAGCCTGAATGAGCCAAATTGGTACCCACCTAGTCTTAGAAATC
CAACACTTTTCTTCTCATAGCATTTGCCTTTGTAATTTCAAGGTCACAGG
TAAAGTAAGGATTTCACTAAGAGATCTAGTTGGTTGAAGCTACATTTGAA
ACACCTGGACTGTACAAGAATGCCACCTGACNGACTGTACATACAAGAAT
GCCACCTGACAGTTATCATAAGAACTGCAGGTTGGCAATATAGTTCATAC
TAGCCTAAACCCTGTTATGTATTTCTTTCTACAGCCCAATGGAAGGTTTG
AAACTGGGAAGAAGATTTGTTTGAGCATCTCTGGACATCACCCTGAAACA
TGGCAGCCTTCTTGGAGCAGTAAGCAGATCTTATATATGATGCAATCTGA
AATAAATTAACATAATGACATGTATAGACCTAACAAACAGTTTTGAAACT
TGATTGCAGTCAATCATATTTCCATTATTACATTATTTATTTATTACCCT
TTACAAAAAAATTGATTTTAGTTTTTTACAGAAATTCAAAGGTTGCCCAC
CAGTGCTGCTTGTGTGAGTGGGTCACAAAAAAACAAGAGCTGAAGTTTCC
CTTGATCATTTTTTATTGTTGTAGAATATGCTTGTCTCTCATCGACACAT
TTTCATTTGTTTGTACAGTTCGTACCGTCCTGTTGGCCATCATAGGCTTC
ATGCCCACCAAGGGAGCTGGCGCGATTGGGTCCTTGGACTACACACCAGA
AGAGCGCAAGATACTGTCTAGAAAGTGAGATGTTATGATCACCATTTATT
TTCTTCTCAAAGAGTATGAGGGCAATGTGAG

Coding sequence (CDS) from alignment at Sc0000678:449..3279-

>transcript:BL83357_cuf0 ID=transcript:BL83357_cuf0|Name=transcript:BL83357_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2160bp|location=Sequence derived from alignment at Sc0000678:449..3279- (Branchiostoma lanceolatum)
ATGGAGGGACGATACAACATGAAAAGTCCAGCTGTGAAGCGGTTGATGAG
GGAGGCTAAAGAAATGCACGAACCAACAGAACAGTATTACGCCCAACCAC
TGGAGGACAACTTGTTTGAATGGCACTTCACTGTCCGTGGTCCGCCTGAC
TCTGACTTCCAGGGTGGGATGTACCACGGGCGCATCACTCTCCCGCCCGA
GTACCCCATGAAACCTCCCAGCATCATGCTTCTCACTCCCAATGGAAGGT
TTGAAACTGGGAAGAAGATTTGTTTGAGCATCTCTGGACATCACCCTGAA
ACATGGCAGCCTTCTTGGAGCATTCGTACCGTCCTGTTGGCCATCATAGG
CTTCATGCCCACCAAGGGAGCTGGCGCGATTGGGTCCTTGGACTACACAC
CAGAAGAGCGCAAGATACTGTCTAGAAAGTGAATGGAGGGACGATACAAC
ATGAAAAGTCCAGCTGTGAAGCGGTTGATGAGGGAGGCTAAAGAAATGCA
CGAACCAACAGAACAGTATTACGCCCAACCACTGGAGGACAACTTGTTTG
AATGGCACTTCACTGTCCGTGGTCCGCCTGACTCTGACTTCCAGGGTGGG
ATGTACCACGGGCGCATCACTCTCCCGCCCGAGTACCCCATGAAACCTCC
CAGCATCATGCTTCTCACTCCCAATGGAAGGTTTGAAACTGGGAAGAAGA
TTTGTTTGAGCATCTCTGGACATCACCCTGAAACATGGCAGCCTTCTTGG
AGCATTCGTACCGTCCTGTTGGCCATCATAGGCTTCATGCCCACCAAGGG
AGCTGGCGCGATTGGGTCCTTGGACTACACACCAGAAGAGCGCAAGATAC
TGTCTAGAAAGTGAATGGAGGGACGATACAACATGAAAAGTCCAGCTGTG
AAGCGGTTGATGAGGGAGGCTAAAGAAATGCACGAACCAACAGAACAGTA
TTACGCCCAACCACTGGAGGACAACTTGTTTGAATGGCACTTCACTGTCC
GTGGTCCGCCTGACTCTGACTTCCAGGGTGGGATGTACCACGGGCGCATC
ACTCTCCCGCCCGAGTACCCCATGAAACCTCCCAGCATCATGCTTCTCAC
TCCCAATGGAAGGTTTGAAACTGGGAAGAAGATTTGTTTGAGCATCTCTG
GACATCACCCTGAAACATGGCAGCCTTCTTGGAGCATTCGTACCGTCCTG
TTGGCCATCATAGGCTTCATGCCCACCAAGGGAGCTGGCGCGATTGGGTC
CTTGGACTACACACCAGAAGAGCGCAAGATACTGTCTAGAAAGTGAATGG
AGGGACGATACAACATGAAAAGTCCAGCTGTGAAGCGGTTGATGAGGGAG
GCTAAAGAAATGCACGAACCAACAGAACAGTATTACGCCCAACCACTGGA
GGACAACTTGTTTGAATGGCACTTCACTGTCCGTGGTCCGCCTGACTCTG
ACTTCCAGGGTGGGATGTACCACGGGCGCATCACTCTCCCGCCCGAGTAC
CCCATGAAACCTCCCAGCATCATGCTTCTCACTCCCAATGGAAGGTTTGA
AACTGGGAAGAAGATTTGTTTGAGCATCTCTGGACATCACCCTGAAACAT
GGCAGCCTTCTTGGAGCATTCGTACCGTCCTGTTGGCCATCATAGGCTTC
ATGCCCACCAAGGGAGCTGGCGCGATTGGGTCCTTGGACTACACACCAGA
AGAGCGCAAGATACTGTCTAGAAAGTGAATGGAGGGACGATACAACATGA
AAAGTCCAGCTGTGAAGCGGTTGATGAGGGAGGCTAAAGAAATGCACGAA
CCAACAGAACAGTATTACGCCCAACCACTGGAGGACAACTTGTTTGAATG
GCACTTCACTGTCCGTGGTCCGCCTGACTCTGACTTCCAGGGTGGGATGT
ACCACGGGCGCATCACTCTCCCGCCCGAGTACCCCATGAAACCTCCCAGC
ATCATGCTTCTCACTCCCAATGGAAGGTTTGAAACTGGGAAGAAGATTTG
TTTGAGCATCTCTGGACATCACCCTGAAACATGGCAGCCTTCTTGGAGCA
TTCGTACCGTCCTGTTGGCCATCATAGGCTTCATGCCCACCAAGGGAGCT
GGCGCGATTGGGTCCTTGGACTACACACCAGAAGAGCGCAAGATACTGTC
TAGAAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83357gene:BL83357Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83357_cuf0transcript:BL83357_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83357_cuf0-E1BL83357_cuf0-E1-1564476830-492524Branchiostoma lanceolatumexon
BL83357_cuf0-E2BL83357_cuf0-E2-1564476830-492521Branchiostoma lanceolatumexon
BL83357_cuf0-E3BL83357_cuf0-E3-1564476830-492519Branchiostoma lanceolatumexon
BL83357_cuf0-E4BL83357_cuf0-E4-1564476830-492517Branchiostoma lanceolatumexon
BL83357_cuf0-E5BL83357_cuf0-E5-1564476830-492515Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000678genomeSc0000678:449..3279 -
Properties
Property NameValue
Transcript idBL83357_cuf0
Biotypeprotein_coding