transcript:BL83341_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83341_cuf0
Unique Nametranscript:BL83341_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83341_cuf0

>transcript:BL83341_cuf0-protein ID=transcript:BL83341_cuf0-protein|Name=transcript:BL83341_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
MVCSVPGKLVSYPFHGGCSSLGTYMFTCAWIVFSTKDKCVYECVDSVQRQ
GTGTGRCSTQGTYFTCIWMVFTTSDVNIMWMMQHQIQACLLVCGQCSGIG
V
Run BLAST on NCBI

mRNA from alignment at Sc0000000:5382584..5383141+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83341_cuf0 ID=transcript:BL83341_cuf0|Name=transcript:BL83341_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=558bp|location=Sequence derived from alignment at Sc0000000:5382584..5383141+ (Branchiostoma lanceolatum)
CAGCAGTGAGGGACAGGTGTGTTAACCTTTCCGTGGACGGTGTTCAGTAC
CAGGGACAGGCATGTTTAATTGTATAAGGGGAGTATTTAGAGACAGTTGT
GTTATCCTCTTCGTAGATGGTGTGTTCAGTACCAGGGAAATTAGTTAGTT
ATCCTTTCCATGGAGGGTGTTCATCACTAGGGACATACATGTTTACCTGT
GCGTGGATAGTGTTCAGCACCAAGGACAAATGTGTTTATGAGTGCGTGGA
TAGTGTACAAAGACAGGGTACTGGTACTGGACGGTGTTCAACGCAGGGAA
CATATTTTACCTGTATATGGATGGTTTTCACCACCAGTGACGTTAACATT
ATGTGGATGATGCAGCACCAAATACAGGCATGTTTACTTGTGTGTGGTCA
GTGTTCAGGGATAGGTGTATGAATCTTTCCAATGATGGCGTTTACATCAG
GCAAAGTCATACTTAACTGTGTGTGGATAGTGTTCAAGGACAGACGTGAT
TGTGGATAGTGTCTAAACAACAACAAATAGTAGATTTGACGAAAGCACGA
TAGTTTTT

Coding sequence (CDS) from alignment at Sc0000000:5382584..5383141+

>transcript:BL83341_cuf0 ID=transcript:BL83341_cuf0|Name=transcript:BL83341_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=306bp|location=Sequence derived from alignment at Sc0000000:5382584..5383141+ (Branchiostoma lanceolatum)
ATGGTGTGTTCAGTACCAGGGAAATTAGTTAGTTATCCTTTCCATGGAGG
GTGTTCATCACTAGGGACATACATGTTTACCTGTGCGTGGATAGTGTTCA
GCACCAAGGACAAATGTGTTTATGAGTGCGTGGATAGTGTACAAAGACAG
GGTACTGGTACTGGACGGTGTTCAACGCAGGGAACATATTTTACCTGTAT
ATGGATGGTTTTCACCACCAGTGACGTTAACATTATGTGGATGATGCAGC
ACCAAATACAGGCATGTTTACTTGTGTGTGGTCAGTGTTCAGGGATAGGT
GTATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83341gene:BL83341Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83341_cuf0-E1BL83341_cuf0-E1-1564476830-14718Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83341_cuf0transcript:BL83341_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:5382584..5383141 +
Properties
Property NameValue
Transcript idBL83341_cuf0
Biotypeprotein_coding