transcript:BL83255_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83255_cuf0
Unique Nametranscript:BL83255_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83255_cuf0

>transcript:BL83255_cuf0-protein ID=transcript:BL83255_cuf0-protein|Name=transcript:BL83255_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=186bp
DSQRLQEDLNTLEEWQTKWLMQFNPEKCYIMHITNKRNPIVTTYQFCGQA
LATAKSHPYLGVTLTTGLKWNTHINKVTTKAKQTLGVIKRNLWACPAKVK
SLAYTSLVRPNLEYAATVWDPYTKKDIDKLERVQNQAARFCTNNYKRGAS
VTKMKADLQWMSLEDRRTMCRLCMMYKMTNKLVDVP
Run BLAST on NCBI

mRNA from alignment at xpSc0040287:2149..2709+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83255_cuf0 ID=transcript:BL83255_cuf0|Name=transcript:BL83255_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=561bp|location=Sequence derived from alignment at xpSc0040287:2149..2709+ (Branchiostoma lanceolatum)
TGACTCACAGCGTTTGCAAGAAGATTTGAACACACTCGAAGAATGGCAAA
CCAAATGGCTCATGCAGTTTAATCCGGAAAAATGTTACATCATGCACATA
ACAAACAAACGAAACCCAATTGTAACCACCTACCAGTTCTGTGGACAGGC
TCTAGCAACAGCAAAGAGCCACCCGTACCTAGGCGTTACATTAACAACGG
GGCTAAAGTGGAACACCCATATCAACAAAGTAACAACTAAGGCTAAACAG
ACATTGGGAGTGATCAAACGTAATTTGTGGGCATGCCCAGCAAAGGTAAA
ATCACTTGCATACACGTCTCTAGTAAGACCAAACCTTGAATATGCTGCAA
CAGTTTGGGATCCATACACAAAGAAGGATATAGATAAACTGGAGAGGGTG
CAGAACCAAGCTGCCAGATTCTGCACGAACAACTATAAAAGGGGCGCTAG
TGTAACAAAAATGAAAGCAGATCTGCAATGGATGTCACTTGAGGACAGGA
GAACAATGTGCAGACTTTGCATGATGTACAAAATGACTAATAAACTTGTG
GACGTACCGAC

Coding sequence (CDS) from alignment at xpSc0040287:2149..2709+

>transcript:BL83255_cuf0 ID=transcript:BL83255_cuf0|Name=transcript:BL83255_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=558bp|location=Sequence derived from alignment at xpSc0040287:2149..2709+ (Branchiostoma lanceolatum)
GACTCACAGCGTTTGCAAGAAGATTTGAACACACTCGAAGAATGGCAAAC
CAAATGGCTCATGCAGTTTAATCCGGAAAAATGTTACATCATGCACATAA
CAAACAAACGAAACCCAATTGTAACCACCTACCAGTTCTGTGGACAGGCT
CTAGCAACAGCAAAGAGCCACCCGTACCTAGGCGTTACATTAACAACGGG
GCTAAAGTGGAACACCCATATCAACAAAGTAACAACTAAGGCTAAACAGA
CATTGGGAGTGATCAAACGTAATTTGTGGGCATGCCCAGCAAAGGTAAAA
TCACTTGCATACACGTCTCTAGTAAGACCAAACCTTGAATATGCTGCAAC
AGTTTGGGATCCATACACAAAGAAGGATATAGATAAACTGGAGAGGGTGC
AGAACCAAGCTGCCAGATTCTGCACGAACAACTATAAAAGGGGCGCTAGT
GTAACAAAAATGAAAGCAGATCTGCAATGGATGTCACTTGAGGACAGGAG
AACAATGTGCAGACTTTGCATGATGTACAAAATGACTAATAAACTTGTGG
ACGTACCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83255gene:BL83255Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83255_cuf0-E1BL83255_cuf0-E1-1564476830-560437Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83255_cuf0transcript:BL83255_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0040287genomexpSc0040287:2149..2709 +
Properties
Property NameValue
Transcript idBL83255_cuf0
Biotypeprotein_coding