transcript:BL83219_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83219_cuf1
Unique Nametranscript:BL83219_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83219_cuf1

>transcript:BL83219_cuf1-protein ID=transcript:BL83219_cuf1-protein|Name=transcript:BL83219_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=104bp
GYEGDARAGTADACRLSNVVQPRPCNCYGHSDQCDENGRCLNCQHNTIGA
YCSQCAPGYEGNARQGRPDDCQPKGPAKPACNCNGHSDQCDESGRCLVRV
EPPV
Run BLAST on NCBI

mRNA from alignment at xfSc0028848:8..623-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83219_cuf1 ID=transcript:BL83219_cuf1|Name=transcript:BL83219_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=616bp|location=Sequence derived from alignment at xfSc0028848:8..623- (Branchiostoma lanceolatum)
GGGCTATGAAGGAGATGCACGGGCAGGCACTGCAGATGCGTGCAGGCTCA
GCAACGTTGTACAGCCTCGCCCATGCAACTGCTACGGTCATTCAGATCAG
TGTGATGAGAATGGACGCTGCTTGGTATGATATGACCATTTCTTCCATAC
ACAACTATTCACATGTAACAATCGTCTATACAACAAACATGTCATGATCT
CCTTGCCAGTGTGAGAGAGGGTGCTTTTATTGAGTCTATGATTATGGCTC
GCATTAAATATCATATTGTTGTGACAACAAGCTGAAGGACATCAGTTGAT
CAGCCAAACTGATTTTCCATAGTTAAGATGGCTTTGGTTGAGGAAGATTT
GGTTGACTTGAATTTGTAAGGTACAGGTTTGTATTGATTCTCACTCATGC
ATTTCATTGCTCATTGCACCTCACCAGAACTGCCAGCACAACACAATAGG
TGCATACTGCAGCCAGTGTGCCCCTGGATACGAGGGCAATGCTCGCCAGG
GTAGGCCAGATGATTGCCAGCCTAAGGGGCCTGCGAAGCCAGCCTGTAAT
TGTAACGGGCATTCCGACCAGTGTGACGAATCTGGCAGGTGCCTGGTAAG
GGTTGAACCACCTGTC

Coding sequence (CDS) from alignment at xfSc0028848:8..623-

>transcript:BL83219_cuf1 ID=transcript:BL83219_cuf1|Name=transcript:BL83219_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=624bp|location=Sequence derived from alignment at xfSc0028848:8..623- (Branchiostoma lanceolatum)
GGCTATGAAGGAGATGCACGGGCAGGCACTGCAGATGCGTGCAGGCTCAG
CAACGTTGTACAGCCTCGCCCATGCAACTGCTACGGTCATTCAGATCAGT
GTGATGAGAATGGACGCTGCTTGAACTGCCAGCACAACACAATAGGTGCA
TACTGCAGCCAGTGTGCCCCTGGATACGAGGGCAATGCTCGCCAGGGTAG
GCCAGATGATTGCCAGCCTAAGGGGCCTGCGAAGCCAGCCTGTAATTGTA
ACGGGCATTCCGACCAGTGTGACGAATCTGGCAGGTGCCTGGTAAGGGTT
GAACCACCTGTCGGCTATGAAGGAGATGCACGGGCAGGCACTGCAGATGC
GTGCAGGCTCAGCAACGTTGTACAGCCTCGCCCATGCAACTGCTACGGTC
ATTCAGATCAGTGTGATGAGAATGGACGCTGCTTGAACTGCCAGCACAAC
ACAATAGGTGCATACTGCAGCCAGTGTGCCCCTGGATACGAGGGCAATGC
TCGCCAGGGTAGGCCAGATGATTGCCAGCCTAAGGGGCCTGCGAAGCCAG
CCTGTAATTGTAACGGGCATTCCGACCAGTGTGACGAATCTGGCAGGTGC
CTGGTAAGGGTTGAACCACCTGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83219gene:BL83219Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83219_cuf1-E1BL83219_cuf1-E1-1564476830-547676Branchiostoma lanceolatumexon
BL83219_cuf1-E2BL83219_cuf1-E2-1564476830-547673Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83219_cuf1transcript:BL83219_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0028848genomexfSc0028848:8..623 -
Properties
Property NameValue
Transcript idBL83219_cuf1
Biotypeprotein_coding