transcript:BL83204_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83204_cuf0
Unique Nametranscript:BL83204_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83204_cuf0

>transcript:BL83204_cuf0-protein ID=transcript:BL83204_cuf0-protein|Name=transcript:BL83204_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
AQSDDEPSMVVLSYPRYCRFRAIKRRLAAVANPWLRSKLSAALGGFSVTR
KTHLMYCQDSFHHHDLYDHPHICDELGMYAYISRFCVSVQGAKYFLFTDL
LM
Run BLAST on NCBI

mRNA from alignment at xfSc0034478:19..558-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83204_cuf0 ID=transcript:BL83204_cuf0|Name=transcript:BL83204_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=540bp|location=Sequence derived from alignment at xfSc0034478:19..558- (Branchiostoma lanceolatum)
GCACAAAGTGATGACGAGCCCAGCATGGTCGTTCTAAGCTACCCGCGGTA
TTGTCGCTTCCGCGCCATCAAGAGACGGTTGGCAGCAGTAGCCAATCCAT
GGCTGAGGAGCAAGTTATCGGCCGCGTTGGGAGGATTCAGCGTTACCAGG
AAAACCCACCTCATGTACTGTCAGGACAGTTTCCACCATCACGATTTGTA
CGATCATCCACACATCTGTGATGAGCTGGGTATGTATGCCTATATTTCTA
GGTTTTGTGTGTCTGTGCAGGGTGCGAAATACTTTTTGTTTACAGATTTA
CTTATGTAGCCTTAGATTTATTGTTTCCATCGGTATTTTCAACTTCCAAA
ATTGCAAGTTCATATTATTCTTAATGGCAAATCTTGAAAAATCGCCAATT
GCAAGTTGCATTATTGTATTTCGCATCCTGCTGTGTATATGTGTGTGTGT
GTCTGCCACACATTTGAATGAAGACTGTTTCTGTCAGTAAGCATTTTCCC
AATCCCAGTAAGTTCATGCAATTTTATTTCTGGAGGTGCA

Coding sequence (CDS) from alignment at xfSc0034478:19..558-

>transcript:BL83204_cuf0 ID=transcript:BL83204_cuf0|Name=transcript:BL83204_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=309bp|location=Sequence derived from alignment at xfSc0034478:19..558- (Branchiostoma lanceolatum)
GCACAAAGTGATGACGAGCCCAGCATGGTCGTTCTAAGCTACCCGCGGTA
TTGTCGCTTCCGCGCCATCAAGAGACGGTTGGCAGCAGTAGCCAATCCAT
GGCTGAGGAGCAAGTTATCGGCCGCGTTGGGAGGATTCAGCGTTACCAGG
AAAACCCACCTCATGTACTGTCAGGACAGTTTCCACCATCACGATTTGTA
CGATCATCCACACATCTGTGATGAGCTGGGTATGTATGCCTATATTTCTA
GGTTTTGTGTGTCTGTGCAGGGTGCGAAATACTTTTTGTTTACAGATTTA
CTTATGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83204gene:BL83204Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83204_cuf0-E1BL83204_cuf0-E1-1564476830-548623Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83204_cuf0transcript:BL83204_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0034478genomexfSc0034478:19..558 -
Properties
Property NameValue
Transcript idBL83204_cuf0
Biotypeprotein_coding