transcript:BL83176_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83176_cuf0
Unique Nametranscript:BL83176_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83176_cuf0

>transcript:BL83176_cuf0-protein ID=transcript:BL83176_cuf0-protein|Name=transcript:BL83176_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MGVLDAGMDMTSHLDGLNCMSHVFSQLQMLSMSCCRLTQSCGSRTAICSM
QSSANRRTSACVAWLGRSLIYAKKRIGPRTVPWGTPEDTGTESEHSPSST
TRWVL
Run BLAST on NCBI

mRNA from alignment at Sc0000365:87028..88179-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83176_cuf0 ID=transcript:BL83176_cuf0|Name=transcript:BL83176_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1152bp|location=Sequence derived from alignment at Sc0000365:87028..88179- (Branchiostoma lanceolatum)
CTTCTTCTTCTTCTACAATACTGCTGAGCCCGCCTTTCGGCGGATTATTA
GCAGCTGCGCGTTAGTAACAAGTGCAAACAGAGGGTAGAAATGGGGGTAG
ACAAGGACATGTGCAAGAACAGGACAAGTGAACTTTTAGTGTTGTTAGTA
ATTATATATTTACATATATACAAGGACGGGGGGCAGCTCAATGCAGCGAA
GCCCGTCCCAGCTCAGTTTTGAACTGGGAGAGGGACTCCGCCTCCGCCAC
ACTAGGCTCAAGTTCATTCCACTCTTTGATGGTACGAGGGAAGAACGAGA
GCCTGTAGTAGTTGGTCTTACACGCGATGGTCTGCAGCTTGAGAGCATGG
TTAGTGCGGCGGGAGCATCGAGCTGCTGGGACGAGACTAGAGGTGTGGGG
GACAGAGATGGTGTTGTGAAGGATTTTAAACATGGTGGTCAGCCTGGCTG
TTTTGCGGCGATGGGAAAGTGGCTGCCATCCCAGACCAGTAAGCATAGCT
GTTACAGAGGCCGTGCGTTTGTAGTTGTTGTATACATACCTGGCAGCTCT
ACGCTGCACAGCCTCCACCCTACTCACCTGTTCGGCAGTGTGAGGGTCCC
ATACCGAGGAGGCGTACTCCAGAGACGGCCTGACTAATGCCATGTATGCG
CGCCCCTTCGCCTCCACGCTGGCAATCCGCAGGTTCCTACGAAGTATTCC
CAGGGTTCGATTGGCCTTGGCTGAAACGTTGTCGACATGGCAGTTCCAGG
AAAGGTTGGCGGAGATTGTTAACCCTAGATACTTAGCTTTACTTACCTTA
GTCATTATTGTATCATGAAGGGTATAATCATAATTGATGGGTGTTCTTGA
CGCCGGGATGGACATGACCTCACACTTAGATGGATTAAATTGCATGAGCC
ATGTCTTCTCCCAGCTACAGATGTTATCTATGTCATGTTGTAGGTTGACA
CAGTCTTGTGGCTCCCGTACTGCCATCTGCAGTATGCAGTCATCCGCAAA
TAGACGGACCTCTGCATGTGTAGCATGGCTAGGGAGATCATTGATATATG
CCAAGAAAAGGATAGGCCCCAGGACGGTGCCCTGGGGGACACCGGAGGAC
ACTGGTACTGAATCAGAACATTCCCCCTCTAGCACGACACGTTGGGTCCT
GC

Coding sequence (CDS) from alignment at Sc0000365:87028..88179-

>transcript:BL83176_cuf0 ID=transcript:BL83176_cuf0|Name=transcript:BL83176_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=315bp|location=Sequence derived from alignment at Sc0000365:87028..88179- (Branchiostoma lanceolatum)
ATGGGTGTTCTTGACGCCGGGATGGACATGACCTCACACTTAGATGGATT
AAATTGCATGAGCCATGTCTTCTCCCAGCTACAGATGTTATCTATGTCAT
GTTGTAGGTTGACACAGTCTTGTGGCTCCCGTACTGCCATCTGCAGTATG
CAGTCATCCGCAAATAGACGGACCTCTGCATGTGTAGCATGGCTAGGGAG
ATCATTGATATATGCCAAGAAAAGGATAGGCCCCAGGACGGTGCCCTGGG
GGACACCGGAGGACACTGGTACTGAATCAGAACATTCCCCCTCTAGCACG
ACACGTTGGGTCCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83176gene:BL83176Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83176_cuf0-E1BL83176_cuf0-E1-1564476830-449569Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83176_cuf0transcript:BL83176_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000365genomeSc0000365:87028..88179 -
Properties
Property NameValue
Transcript idBL83176_cuf0
Biotypeprotein_coding