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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82656_cuf0 >transcript:BL82656_cuf0-protein ID=transcript:BL82656_cuf0-protein|Name=transcript:BL82656_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=506bp
MASIMIVQVVILTLISVPHNCKASVLSKLLSQGCNVQNWHSNTLLWVHPS
LLPRIYCDNKGLTNVPNDLPSKLFELQLPNNALTTFPCIALPYLNTMILK
NNNISYFPWYCLKNMRRLVHLDLSRNQLFCVNLYPVMSFLPNLKRVDISY
NNLKTLSLCDVGWDMHLPNGPIIQYNPVLVGNPFHCDCKLTWFIDIALKV
EACRNKTSARCVGFLGGNIVAHAMYNDQSLFHCKTPPIVENVELRMLNEY
ISGCYAIWDPTGENSLIYLGEPCDHNSLCPTERQNLRPSDVIGSALLPPT
PRSSEPSVEMSEKPVVRQTEIYQIPTKSEEAFSVSKTVSETPQTHEKTTP
HQVAMTPLLPTLVVGVTSLVCIMILAVYSAMVRKQPDDTNAPHGPVNNIA
AGLAVNDIVNQNDQAGLSADIAQGDDQEGCGNDPNAEAESCAQETPYSIE
PYAEAFGCEVPQYGLGDVQKGGETSSKKTEHITTGPDTQACEHMYHNEEV
SEDEGD Run BLAST on NCBI mRNA from alignment at Sc0000060:1154..3821- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82656_cuf0 ID=transcript:BL82656_cuf0|Name=transcript:BL82656_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2668bp|location=Sequence derived from alignment at Sc0000060:1154..3821- (Branchiostoma lanceolatum)
CTAACTTGTAATGTCAGGACTGAACTAAAGATACAATTGAATGCTGTACT
CTGCTGGTGGCATAAGATTGTAGTTACAGTGAACAGGAATTGGACTAAAT
GTAGAACTAGTACACTTATACAAAATTGTGCTTGTTAATAGTGTTTCGTT
CCCTTATAAAATCCTTTTTTTATGTTTTGTCACTAAAACCATAGTACGAC
ACCATGGCATCTATTATGATTGTCCAGGTTGTGATCCTCACTCTTATAAG
TGTACCGCACAATTGTAAAGCATCAGTACTTTCAAAACTGCTCTCTCAAG
GATGTAACGTTCAAAATTGGCACAGCAATACTCTCCTTTGGGTACATCCT
TCGCTTTTACCCCGAATATATTGTGACAACAAAGGCTTAACGAATGTTCC
GAATGATTTGCCCTCAAAACTCTTTGAGCTTCAGCTTCCCAACAATGCCC
TGACTACGTTTCCTTGCATAGCCCTGCCCTATTTGAACACCATGATCCTA
AAAAACAATAACATCAGTTACTTCCCTTGGTACTGTCTGAAGAACATGCG
CAGGTTAGTTCATCTGGATTTGTCACGTAATCAGCTCTTCTGTGTCAACC
TCTATCCTGTGATGTCTTTCTTGCCTAACTTGAAAAGGGTGGACATTTCC
TACAATAACCTTAAGACATTGTCGTTGTGCGATGTTGGATGGGACATGCA
TTTACCAAATGGACCCATTATACAATACAATCCTGTCCTAGTGGGTAACC
CTTTCCACTGTGACTGCAAGTTAACTTGGTTCATTGATATCGCATTAAAA
GTGGAAGCCTGCCGAAACAAAACATCAGCAAGGTGCGTAGGTTTCCTCGG
TGGAAATATCGTTGCTCACGCCATGTATAATGACCAGTCTTTGTTCCACT
GTAAAACACCTCCAATAGTAGAGAATGTAGAGCTCCGTATGCTAAATGAA
TACATCTCAGGATGTTATGCAATCTGGGATCCGACAGGCGAAAATAGTTT
AATCTACCTAGGTGAGCCCTGTGATCATAACAGTCTCTGTCCCACAGAAC
GTCAGAACCTTCGTCCCTCTGACGTCATCGGCTCGGCATTATTACCACCA
ACACCCCGTAGTTCGGAACCATCAGTAGAGATGAGTGAGAAACCCGTTGT
GCGGCAGACAGAGATATATCAAATACCCACAAAGAGTGAAGAGGCCTTTA
GCGTCTCTAAAACTGTATCAGAAACTCCACAGACCCATGAAAAGACAACT
CCACACCAGGTTGCCATGACACCGTTGCTGCCGACTTTGGTTGTTGGAGT
GACCAGTCTTGTTTGTATTATGATTTTAGCTGTGTATTCAGCAATGGTTA
GGAAACAACCTGATGACACTAATGCCCCACATGGCCCCGTAAATAACATA
GCGGCTGGCTTAGCTGTAAACGACATTGTCAATCAAAACGACCAGGCTGG
TTTATCTGCTGACATTGCCCAGGGTGATGATCAGGAAGGCTGTGGGAATG
ATCCAAACGCGGAGGCGGAGTCCTGCGCGCAGGAAACTCCTTACAGTATT
GAACCTTATGCAGAGGCGTTTGGTTGCGAAGTACCTCAATATGGTCTTGG
GGATGTCCAAAAGGGTGGGGAAACAAGCAGTAAGAAGACAGAGCACATCA
CCACAGGTCCAGATACACAGGCCTGTGAACATATGTACCACAACGAAGAG
GTTTCCGAGGACGAAGGGGATTAAAAGATTGAATCATAAGCTACATTTCC
GTACATAGGAGATGGATTGGTGCATCTCTGGATATTTAAAGCTTATGCCA
AATTTTAACATGATCGGTGTATTTTGCGTAAAGCCTAATGGGCACCTGAA
TCTAGCCTAAGCCAATTCGGCCTGCCCAAATTTACACCGAATTGTGGGGA
GTTGACAGTACCCCCTCTCCCTCCGCCTGCATGTCCCCATACCAACAAAC
CTTGCGATTTATGAGAACAACACCCTCCCCAAAAAGAAAGTAAAAAAAAA
ACAAGATAGAAATATTGTAGTACCAAAGGGATGACATGCTAGTGGATCCA
TGTCTTTTTTAAATATTTCCAATGATGTGGGAATATAACAACGTAATAAC
TGTTTATCTACATGAGTCGCTGAGGAATATAAGCAGAATAATGTTTGTTC
ATATTTATCAGATGTTCATCATCACGAGTTCAGAATTGTTGCATTAGCTC
TATGTGTTAGTGATTGTATTTATCTTAGATTCGCCATTACATTTTCCATT
GATTCATGTTCTGATAATTTATACAATATAACAGGCTAATAAAGGGCTTT
GTGCAATACACTTTTTAGATCAAAATGTAGTCGAAAGCACCATAAATGTG
TAAAATCGTGAAAGGAACATTCAATTTACTTAGTTTCCGCAAATATTAGC
TGTCTGTTCATACATGTAACAATGCTGTAAAAAAACTCTCCTGATGGGGT
TCCTGAGTTATTCATGTATGGTATCTAGTAAGCATAGTATGATTTGTGAA
GTATCAGTGTAAACCTGTATCTATGGGTGAATTTATCAAATGATCTAACT
ACTTTTCGACGTAATGTTGTGCCCTCGTAGGTACACTGTTTAATCCAACT
TAGCACTGCATATGTAACACTAAGCACTGTTTGACATTTGGCGTCCGCTG
CATTTTTGCGAGTGATAC Coding sequence (CDS) from alignment at Sc0000060:1154..3821- >transcript:BL82656_cuf0 ID=transcript:BL82656_cuf0|Name=transcript:BL82656_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1521bp|location=Sequence derived from alignment at Sc0000060:1154..3821- (Branchiostoma lanceolatum)
ATGGCATCTATTATGATTGTCCAGGTTGTGATCCTCACTCTTATAAGTGT
ACCGCACAATTGTAAAGCATCAGTACTTTCAAAACTGCTCTCTCAAGGAT
GTAACGTTCAAAATTGGCACAGCAATACTCTCCTTTGGGTACATCCTTCG
CTTTTACCCCGAATATATTGTGACAACAAAGGCTTAACGAATGTTCCGAA
TGATTTGCCCTCAAAACTCTTTGAGCTTCAGCTTCCCAACAATGCCCTGA
CTACGTTTCCTTGCATAGCCCTGCCCTATTTGAACACCATGATCCTAAAA
AACAATAACATCAGTTACTTCCCTTGGTACTGTCTGAAGAACATGCGCAG
GTTAGTTCATCTGGATTTGTCACGTAATCAGCTCTTCTGTGTCAACCTCT
ATCCTGTGATGTCTTTCTTGCCTAACTTGAAAAGGGTGGACATTTCCTAC
AATAACCTTAAGACATTGTCGTTGTGCGATGTTGGATGGGACATGCATTT
ACCAAATGGACCCATTATACAATACAATCCTGTCCTAGTGGGTAACCCTT
TCCACTGTGACTGCAAGTTAACTTGGTTCATTGATATCGCATTAAAAGTG
GAAGCCTGCCGAAACAAAACATCAGCAAGGTGCGTAGGTTTCCTCGGTGG
AAATATCGTTGCTCACGCCATGTATAATGACCAGTCTTTGTTCCACTGTA
AAACACCTCCAATAGTAGAGAATGTAGAGCTCCGTATGCTAAATGAATAC
ATCTCAGGATGTTATGCAATCTGGGATCCGACAGGCGAAAATAGTTTAAT
CTACCTAGGTGAGCCCTGTGATCATAACAGTCTCTGTCCCACAGAACGTC
AGAACCTTCGTCCCTCTGACGTCATCGGCTCGGCATTATTACCACCAACA
CCCCGTAGTTCGGAACCATCAGTAGAGATGAGTGAGAAACCCGTTGTGCG
GCAGACAGAGATATATCAAATACCCACAAAGAGTGAAGAGGCCTTTAGCG
TCTCTAAAACTGTATCAGAAACTCCACAGACCCATGAAAAGACAACTCCA
CACCAGGTTGCCATGACACCGTTGCTGCCGACTTTGGTTGTTGGAGTGAC
CAGTCTTGTTTGTATTATGATTTTAGCTGTGTATTCAGCAATGGTTAGGA
AACAACCTGATGACACTAATGCCCCACATGGCCCCGTAAATAACATAGCG
GCTGGCTTAGCTGTAAACGACATTGTCAATCAAAACGACCAGGCTGGTTT
ATCTGCTGACATTGCCCAGGGTGATGATCAGGAAGGCTGTGGGAATGATC
CAAACGCGGAGGCGGAGTCCTGCGCGCAGGAAACTCCTTACAGTATTGAA
CCTTATGCAGAGGCGTTTGGTTGCGAAGTACCTCAATATGGTCTTGGGGA
TGTCCAAAAGGGTGGGGAAACAAGCAGTAAGAAGACAGAGCACATCACCA
CAGGTCCAGATACACAGGCCTGTGAACATATGTACCACAACGAAGAGGTT
TCCGAGGACGAAGGGGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000060 | genome | Sc0000060:1154..3821 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82656_cuf0 |
| Biotype | protein_coding |
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