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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82251_cuf0 >transcript:BL82251_cuf0-protein ID=transcript:BL82251_cuf0-protein|Name=transcript:BL82251_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1075bp
MMVPGQEFSLASFNCRGLGNNVKRMETFTFLKDKPHPVICLQETHSTFEK
ENRWMTEWGSQILXTLLNDNMFLKETRKFIEEFFLFNKGSAEPRVVWDTF
KCAFRGHCIKYTSFKKKQIFEKENRLLDEIRRLQNDIDSLGSPPLCLLED
LEQKEKVLETLYEEKRQKIMLHSRATWMKLGEKPTKYFFNLLNRNKTKKN
VTKIVLQDEKFVTDPSDILCEEVKFYSSLYSFEDAKKPLKEEKAYNMFFV
EGNIPTLTKQQSEICEGRIKVKELWDSISTFKKGKSPGFDGITVEVYKEF
FDLLKQPMLDCFNKVYDLGQLSETQKVGIISLLLKQDATGTDKNPVYLKN
WRPLTLLPCDTRILSKCIALRIKKVISSIIHMDQTGFLSGRSISDNIRKI
LEIIEFCEKDNIEGLIFITDFEKAFDKIRIDFVLEALKKFGFGKSLLQWV
TIMYTMITSRISNQGYLSEPFRLLRGLRQGCPLSPYLFVLSVELLSIRVR
ANENIEGLVCRKEPCKLSQFADDTDFFLKPALTTLETLCLELKNFSNISG
LVPNFDKCIILRMGPLKDTGFQLPCTFPIKWSDGPADLLGIHIPQDMNTL
ISDNFSRKLQKVDRILQPWKGKTLTLYGKVTLINTLVVSQFTYLFMSLPS
PDAEFFQTYEKKVFKFLWSGGPERVKRNIVYNMYEYGGLKLINLEAFNAA
LKAAWVPRMYLNKSWFCRKMLNHCIHFNYDIFPFLQLTEAHFHNVVSKHS
HLSTFFEEVMLAWLKAQKKPPDNMSEYLRQFLWFNSNILIDGLPFFWETF
SQRGILFVNDLLNMDGYFMTYRSFIGKYGRICDELKFIQLLSSIPFKWKQ
SIQGISLCETAIMPVTKYSKWVKGLKINKELYRFYLVERKCVDFHCKAQE
YWIELFNDQIQWDVVYSLTYKTTIDSYLRSFQFKLLHNFLALKNKLYKWK
LSENTLCSYCKTEEETPVHIFCQCSFLVKFWGDVENWISKHMNVEFRFTS
RIILFGSLSYPIILNTLLLIAKVYIFKCRHLKIPTIDGFLAYVHYYYKVE
YIIAQNLQKIEKHLLKWGHIGYALL Run BLAST on NCBI mRNA from alignment at Sc0000004:5428582..5432069+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82251_cuf0 ID=transcript:BL82251_cuf0|Name=transcript:BL82251_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3488bp|location=Sequence derived from alignment at Sc0000004:5428582..5432069+ (Branchiostoma lanceolatum)
TCTGTTTTACGTAAAATGTGCAGCTGTGAATGTGGTACAGACAGGTATAA
TTGTGCAGCTGTGGGGTATTTAGTGTACCTTGTTTTGATGGTGGTATGCG
AAATTTGCATTTATATAGGCAGACGTAATTTATTCAAATGAAATGATGGT
GCCCGGACAGGAATTTTCCCTCGCTAGTTTTAACTGCAGAGGGTTAGGAA
ATAATGTGAAGCGAATGGAAACATTTACGTTTTTGAAAGACAAGCCCCAC
CCAGTCATTTGCTTACAGGAAACCCACTCAACTTTTGAGAAAGAGAATCG
GTGGATGACAGAGTGGGGTAGTCAGATTTTGTNCACTCTTTTGAATGATA
ACATGTTTCTTAAAGAAACAAGAAAGTTTATTGAAGAATTTTTTCTCTTT
AATAAGGGTTCAGCAGAACCCAGAGTTGTATGGGATACATTTAAGTGTGC
CTTTCGAGGACACTGCATAAAATATACATCCTTCAAGAAGAAACAAATAT
TTGAGAAAGAAAACCGATTACTAGATGAAATAAGAAGATTACAAAATGAT
ATTGATAGTTTGGGATCTCCCCCACTCTGTTTGCTAGAGGACTTAGAACA
AAAAGAGAAGGTATTGGAGACCCTCTACGAAGAAAAAAGACAAAAAATCA
TGTTACATTCTCGCGCAACATGGATGAAGCTAGGTGAAAAGCCCACCAAA
TATTTCTTTAACCTGCTAAACCGAAACAAAACTAAAAAGAATGTCACTAA
GATTGTGTTGCAGGATGAAAAATTTGTAACTGACCCTTCTGATATATTGT
GCGAGGAAGTTAAATTCTACTCTTCGCTTTATTCCTTTGAAGATGCTAAG
AAACCATTGAAGGAAGAGAAAGCTTATAACATGTTTTTTGTAGAGGGTAA
CATACCTACTTTAACTAAACAACAGTCTGAAATATGTGAAGGTAGGATAA
AAGTAAAAGAACTCTGGGATTCAATCTCAACTTTTAAGAAAGGGAAATCA
CCAGGGTTTGATGGGATTACTGTGGAAGTTTATAAAGAATTTTTTGATCT
ATTAAAGCAGCCTATGTTGGATTGTTTTAATAAGGTGTATGATTTAGGAC
AACTGTCAGAAACGCAAAAAGTTGGCATTATTTCGCTACTCTTGAAACAA
GATGCAACAGGAACTGACAAAAACCCAGTATATTTAAAAAATTGGCGCCC
TCTTACTTTGTTGCCTTGCGACACAAGAATCTTATCTAAATGTATCGCGC
TTAGAATTAAGAAAGTAATATCTAGTATTATACATATGGATCAGACTGGG
TTTTTGTCTGGTAGATCTATAAGTGATAACATTCGAAAAATATTGGAAAT
TATTGAATTTTGTGAAAAGGATAATATTGAAGGACTTATCTTTATAACTG
ATTTTGAAAAGGCATTTGACAAAATTAGAATAGATTTTGTGTTAGAAGCT
CTGAAAAAGTTTGGGTTTGGTAAATCTTTATTACAGTGGGTAACCATTAT
GTATACAATGATTACTAGTAGGATAAGTAACCAAGGTTATTTATCAGAGC
CCTTTAGGCTTCTCCGGGGGCTAAGACAAGGTTGTCCATTATCGCCCTAT
TTGTTTGTTTTATCTGTAGAATTGTTGTCCATTAGAGTGCGAGCAAATGA
AAATATTGAAGGATTGGTGTGCCGAAAAGAGCCATGCAAATTGTCTCAAT
TTGCGGATGATACAGATTTTTTCCTCAAACCTGCTCTTACAACATTGGAA
ACATTATGTTTAGAGTTAAAAAACTTCTCAAATATTTCTGGGCTTGTGCC
AAATTTTGACAAATGTATAATCTTAAGAATGGGTCCACTGAAGGACACTG
GTTTTCAACTACCATGTACTTTTCCTATTAAGTGGTCAGATGGTCCAGCT
GACCTTTTGGGAATTCACATTCCCCAAGATATGAACACTTTGATTTCTGA
TAATTTCAGTAGAAAACTACAAAAAGTAGATAGGATACTCCAGCCTTGGA
AAGGAAAGACTCTTACCCTGTATGGCAAAGTGACACTGATAAATACTTTG
GTTGTTTCTCAGTTTACATACTTATTCATGTCACTGCCCTCTCCAGATGC
TGAGTTTTTTCAGACTTATGAGAAAAAAGTATTCAAGTTTCTTTGGTCAG
GAGGGCCAGAACGTGTCAAAAGGAATATAGTTTATAATATGTATGAATAT
GGTGGATTAAAACTGATCAATTTAGAAGCCTTTAATGCTGCACTTAAGGC
AGCATGGGTTCCTAGAATGTATTTGAACAAAAGCTGGTTTTGTAGGAAGA
TGTTAAATCATTGTATACACTTTAACTATGATATTTTTCCATTCTTACAA
CTTACCGAAGCACACTTTCACAATGTTGTTTCTAAACATTCACATTTAAG
TACTTTCTTTGAAGAGGTGATGTTAGCCTGGCTGAAGGCCCAGAAAAAAC
CTCCTGATAATATGTCTGAATACTTGAGACAATTTCTCTGGTTCAATTCC
AATATACTTATTGATGGACTACCTTTTTTCTGGGAAACCTTTAGCCAAAG
AGGAATTTTGTTTGTTAATGATTTATTGAACATGGATGGATACTTTATGA
CATACAGATCATTTATTGGTAAATATGGAAGAATTTGTGATGAGCTTAAA
TTCATACAATTGTTATCCAGTATTCCCTTTAAATGGAAACAAAGTATTCA
AGGTATTTCTCTATGTGAAACAGCTATTATGCCTGTTACAAAATATTCCA
AGTGGGTAAAAGGACTTAAGATAAACAAGGAATTGTACCGTTTTTACTTA
GTTGAAAGGAAATGTGTTGACTTCCATTGTAAAGCCCAGGAATATTGGAT
AGAATTGTTTAATGACCAGATACAATGGGATGTAGTTTACAGTCTGACCT
ATAAAACAACTATTGACTCCTATTTAAGATCCTTTCAATTTAAGTTGTTG
CATAATTTTCTTGCTCTTAAGAATAAGCTTTATAAATGGAAATTATCAGA
AAATACACTTTGTTCTTATTGTAAGACTGAGGAGGAAACTCCCGTCCACA
TCTTTTGTCAATGTTCTTTTCTTGTAAAATTTTGGGGGGATGTAGAAAAC
TGGATCAGTAAGCATATGAACGTGGAATTTAGATTTACAAGTAGAATTAT
TTTATTTGGTTCATTAAGCTATCCTATCATTTTGAACACATTGTTACTAA
TTGCTAAGGTGTATATCTTTAAATGTAGACATTTAAAAATTCCTACAATA
GATGGCTTTTTAGCCTATGTACACTATTATTACAAAGTTGAGTATATCAT
TGCCCAAAACTTACAGAAGATTGAGAAACACTTGTTAAAGTGGGGGCACA
TTGGTTATGCACTGTTATAATTAATTTAGTTGGGAAAATGCAAATTGTCT
TTCCTGGCTTAGGTTGCTTTTTGTATATCCACTTTGTATTGTTGTGTCTT
TTTTCTCAAAAATGAATAAAGATTATGTTAAAAAAAAG Coding sequence (CDS) from alignment at Sc0000004:5428582..5432069+ >transcript:BL82251_cuf0 ID=transcript:BL82251_cuf0|Name=transcript:BL82251_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3228bp|location=Sequence derived from alignment at Sc0000004:5428582..5432069+ (Branchiostoma lanceolatum)
ATGATGGTGCCCGGACAGGAATTTTCCCTCGCTAGTTTTAACTGCAGAGG
GTTAGGAAATAATGTGAAGCGAATGGAAACATTTACGTTTTTGAAAGACA
AGCCCCACCCAGTCATTTGCTTACAGGAAACCCACTCAACTTTTGAGAAA
GAGAATCGGTGGATGACAGAGTGGGGTAGTCAGATTTTGTNCACTCTTTT
GAATGATAACATGTTTCTTAAAGAAACAAGAAAGTTTATTGAAGAATTTT
TTCTCTTTAATAAGGGTTCAGCAGAACCCAGAGTTGTATGGGATACATTT
AAGTGTGCCTTTCGAGGACACTGCATAAAATATACATCCTTCAAGAAGAA
ACAAATATTTGAGAAAGAAAACCGATTACTAGATGAAATAAGAAGATTAC
AAAATGATATTGATAGTTTGGGATCTCCCCCACTCTGTTTGCTAGAGGAC
TTAGAACAAAAAGAGAAGGTATTGGAGACCCTCTACGAAGAAAAAAGACA
AAAAATCATGTTACATTCTCGCGCAACATGGATGAAGCTAGGTGAAAAGC
CCACCAAATATTTCTTTAACCTGCTAAACCGAAACAAAACTAAAAAGAAT
GTCACTAAGATTGTGTTGCAGGATGAAAAATTTGTAACTGACCCTTCTGA
TATATTGTGCGAGGAAGTTAAATTCTACTCTTCGCTTTATTCCTTTGAAG
ATGCTAAGAAACCATTGAAGGAAGAGAAAGCTTATAACATGTTTTTTGTA
GAGGGTAACATACCTACTTTAACTAAACAACAGTCTGAAATATGTGAAGG
TAGGATAAAAGTAAAAGAACTCTGGGATTCAATCTCAACTTTTAAGAAAG
GGAAATCACCAGGGTTTGATGGGATTACTGTGGAAGTTTATAAAGAATTT
TTTGATCTATTAAAGCAGCCTATGTTGGATTGTTTTAATAAGGTGTATGA
TTTAGGACAACTGTCAGAAACGCAAAAAGTTGGCATTATTTCGCTACTCT
TGAAACAAGATGCAACAGGAACTGACAAAAACCCAGTATATTTAAAAAAT
TGGCGCCCTCTTACTTTGTTGCCTTGCGACACAAGAATCTTATCTAAATG
TATCGCGCTTAGAATTAAGAAAGTAATATCTAGTATTATACATATGGATC
AGACTGGGTTTTTGTCTGGTAGATCTATAAGTGATAACATTCGAAAAATA
TTGGAAATTATTGAATTTTGTGAAAAGGATAATATTGAAGGACTTATCTT
TATAACTGATTTTGAAAAGGCATTTGACAAAATTAGAATAGATTTTGTGT
TAGAAGCTCTGAAAAAGTTTGGGTTTGGTAAATCTTTATTACAGTGGGTA
ACCATTATGTATACAATGATTACTAGTAGGATAAGTAACCAAGGTTATTT
ATCAGAGCCCTTTAGGCTTCTCCGGGGGCTAAGACAAGGTTGTCCATTAT
CGCCCTATTTGTTTGTTTTATCTGTAGAATTGTTGTCCATTAGAGTGCGA
GCAAATGAAAATATTGAAGGATTGGTGTGCCGAAAAGAGCCATGCAAATT
GTCTCAATTTGCGGATGATACAGATTTTTTCCTCAAACCTGCTCTTACAA
CATTGGAAACATTATGTTTAGAGTTAAAAAACTTCTCAAATATTTCTGGG
CTTGTGCCAAATTTTGACAAATGTATAATCTTAAGAATGGGTCCACTGAA
GGACACTGGTTTTCAACTACCATGTACTTTTCCTATTAAGTGGTCAGATG
GTCCAGCTGACCTTTTGGGAATTCACATTCCCCAAGATATGAACACTTTG
ATTTCTGATAATTTCAGTAGAAAACTACAAAAAGTAGATAGGATACTCCA
GCCTTGGAAAGGAAAGACTCTTACCCTGTATGGCAAAGTGACACTGATAA
ATACTTTGGTTGTTTCTCAGTTTACATACTTATTCATGTCACTGCCCTCT
CCAGATGCTGAGTTTTTTCAGACTTATGAGAAAAAAGTATTCAAGTTTCT
TTGGTCAGGAGGGCCAGAACGTGTCAAAAGGAATATAGTTTATAATATGT
ATGAATATGGTGGATTAAAACTGATCAATTTAGAAGCCTTTAATGCTGCA
CTTAAGGCAGCATGGGTTCCTAGAATGTATTTGAACAAAAGCTGGTTTTG
TAGGAAGATGTTAAATCATTGTATACACTTTAACTATGATATTTTTCCAT
TCTTACAACTTACCGAAGCACACTTTCACAATGTTGTTTCTAAACATTCA
CATTTAAGTACTTTCTTTGAAGAGGTGATGTTAGCCTGGCTGAAGGCCCA
GAAAAAACCTCCTGATAATATGTCTGAATACTTGAGACAATTTCTCTGGT
TCAATTCCAATATACTTATTGATGGACTACCTTTTTTCTGGGAAACCTTT
AGCCAAAGAGGAATTTTGTTTGTTAATGATTTATTGAACATGGATGGATA
CTTTATGACATACAGATCATTTATTGGTAAATATGGAAGAATTTGTGATG
AGCTTAAATTCATACAATTGTTATCCAGTATTCCCTTTAAATGGAAACAA
AGTATTCAAGGTATTTCTCTATGTGAAACAGCTATTATGCCTGTTACAAA
ATATTCCAAGTGGGTAAAAGGACTTAAGATAAACAAGGAATTGTACCGTT
TTTACTTAGTTGAAAGGAAATGTGTTGACTTCCATTGTAAAGCCCAGGAA
TATTGGATAGAATTGTTTAATGACCAGATACAATGGGATGTAGTTTACAG
TCTGACCTATAAAACAACTATTGACTCCTATTTAAGATCCTTTCAATTTA
AGTTGTTGCATAATTTTCTTGCTCTTAAGAATAAGCTTTATAAATGGAAA
TTATCAGAAAATACACTTTGTTCTTATTGTAAGACTGAGGAGGAAACTCC
CGTCCACATCTTTTGTCAATGTTCTTTTCTTGTAAAATTTTGGGGGGATG
TAGAAAACTGGATCAGTAAGCATATGAACGTGGAATTTAGATTTACAAGT
AGAATTATTTTATTTGGTTCATTAAGCTATCCTATCATTTTGAACACATT
GTTACTAATTGCTAAGGTGTATATCTTTAAATGTAGACATTTAAAAATTC
CTACAATAGATGGCTTTTTAGCCTATGTACACTATTATTACAAAGTTGAG
TATATCATTGCCCAAAACTTACAGAAGATTGAGAAACACTTGTTAAAGTG
GGGGCACATTGGTTATGCACTGTTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:5428582..5432069 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82251_cuf0 |
| Biotype | protein_coding |
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