transcript:BL82047_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82047_cuf0
Unique Nametranscript:BL82047_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82047_cuf0

>transcript:BL82047_cuf0-protein ID=transcript:BL82047_cuf0-protein|Name=transcript:BL82047_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=140bp
REGFSFAHCYSGMVSMVAEVHMRDPLRHASDSEGGVFSCFLQYVLFPPHT
CTTKDSVTSISTDDDELETTEADGELQIIVECWIEPQCGVVINSPVQQRH
LEGLEYQDIPQALLPFDSHIISALVTFQHLSAMCGNRCVP
Run BLAST on NCBI

mRNA from alignment at Sc0000003:1422017..1422437-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82047_cuf0 ID=transcript:BL82047_cuf0|Name=transcript:BL82047_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=421bp|location=Sequence derived from alignment at Sc0000003:1422017..1422437- (Branchiostoma lanceolatum)
ACGCGAGGGGTTCAGCTTTGCCCACTGTTATTCCGGCATGGTGAGTATGG
TGGCCGAGGTGCACATGAGGGATCCGCTGCGTCACGCGTCCGACTCGGAA
GGTGGCGTCTTCTCCTGTTTCCTACAGTACGTGCTCTTCCCTCCCCACAC
CTGCACCACGAAGGACAGCGTGACGAGCATCTCTACTGACGACGATGAAC
TGGAAACGACCGAGGCCGACGGAGAGTTGCAGATCATCGTGGAGTGTTGG
ATCGAGCCGCAGTGTGGCGTCGTCATCAACTCCCCCGTCCAGCAGAGGCA
CCTGGAGGGTCTGGAGTACCAGGACATTCCGCAGGCTCTGCTGCCGTTCG
ACTCCCACATCATCTCAGCCCTGGTGACGTTCCAGCATCTCAGCGCCATG
TGCGGCAATCGCTGCGTCCCG

Coding sequence (CDS) from alignment at Sc0000003:1422017..1422437-

>transcript:BL82047_cuf0 ID=transcript:BL82047_cuf0|Name=transcript:BL82047_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=420bp|location=Sequence derived from alignment at Sc0000003:1422017..1422437- (Branchiostoma lanceolatum)
CGCGAGGGGTTCAGCTTTGCCCACTGTTATTCCGGCATGGTGAGTATGGT
GGCCGAGGTGCACATGAGGGATCCGCTGCGTCACGCGTCCGACTCGGAAG
GTGGCGTCTTCTCCTGTTTCCTACAGTACGTGCTCTTCCCTCCCCACACC
TGCACCACGAAGGACAGCGTGACGAGCATCTCTACTGACGACGATGAACT
GGAAACGACCGAGGCCGACGGAGAGTTGCAGATCATCGTGGAGTGTTGGA
TCGAGCCGCAGTGTGGCGTCGTCATCAACTCCCCCGTCCAGCAGAGGCAC
CTGGAGGGTCTGGAGTACCAGGACATTCCGCAGGCTCTGCTGCCGTTCGA
CTCCCACATCATCTCAGCCCTGGTGACGTTCCAGCATCTCAGCGCCATGT
GCGGCAATCGCTGCGTCCCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82047gene:BL82047Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82047_cuf0-E1BL82047_cuf0-E1-1564476830-41906Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82047_cuf0transcript:BL82047_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:1422017..1422437 -
Properties
Property NameValue
Transcript idBL82047_cuf0
Biotypeprotein_coding