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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82040_cuf0 >transcript:BL82040_cuf0-protein ID=transcript:BL82040_cuf0-protein|Name=transcript:BL82040_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=291bp
MTSAVEDMAVKVSRGRIYPWDFDRKGKLPVWTFLNRMEFLGSSQQLFFKA
DNDIKDIKQAIASLKQAMAYELRFVRCQSVQFSPDFSELMTFPGRAIRVE
AKVIFVGKTSWVYETKILDQTTERELANRHVQTVNIDKKTRRPKPLPDWV
TERYSHLTSRPRPTTVQTFDLSDAEPAFVYPVTVAPSDIDANMHTNQSQY
ARYCFNCAATGAKKGAYSIISGDLLDYDVISVDLLYQKESREGDSLRVES
WEDAKEPDTLKFQVKRGEDNILQCRMRFRIPSVPDIEKAKL Run BLAST on NCBI mRNA from alignment at Sc0000000:2581339..2584948- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82040_cuf0 ID=transcript:BL82040_cuf0|Name=transcript:BL82040_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3610bp|location=Sequence derived from alignment at Sc0000000:2581339..2584948- (Branchiostoma lanceolatum)
GCCGGTTTTGACGCGGTAGTAAGCGCTCGGTGATCTCGACAGACGGCAGG
TAACGCTTAACGGTACGTACACGTTCATTTTTCCCGATTTGACAGTACTC
TTCTGTTACACGCTAAATGTTGGTGCTTTTTCAGGCCCGCTAAACAAGAC
TTGCGAGTTTGTGTTGACTGTAAAGACGCCGATGGGCGATGGGTGTGCAC
CGTGTGCTGTAGTGCAACCATTAACCAAGAAGGTTTTATTCACAACGTCG
CGTCGTTAACTGTTACAAACGTAAAATGTATAGGTACTATCGTTATAGTC
TCTACCAGACTAACCGCGCCGGCTATAGGGAGAACATTTGCCGGGGGACT
TTGGCCATGGAGGGTTTCAATCGCAGCCGCAGTTATTTGACCCTCTGAGT
CTCCCTGTAGCCGACTCCCTTCATGCAATTGACTCTATTTGGCCAATTTC
TACTATTTTCCCAGCGATTCGCAGAGGCTGGTAGAGCCTACCGTATCGTA
AAGCCAATGAAATTTACAGAACTCAGTAATACTTAACGTAAAGCCAACTG
ATGAGGCTTGTCCGTGTTGGCTAGTATCATAGCGCTCGTGGTCATGACAT
GCACCCTACAGCCAAGTCATCAGAATGACCTCTCGGTCAAATATCTTACG
TAACATCGGACGGTTGTGGCGTGACCGGAGAACGGATGACCTTTCGGTCA
AATAGCACCTGACGCAATATTGTACCACTGCAATAAATCTGAAGGGCGAT
TCCATTAAGACATTTGGGAAGGGGTTGGCTTAGTTTCCACGTGATGGAAG
GGGGTGTCGAATAAGTATGGAACGCAAACCAGTATGGGATATTATAGATA
TTATAGATATTATAGATAAAATCAATGATGATTTTAGTTGGACTGAGAAA
GAGCGGAAACGAAATTATAGGGTTGAGAAATTCGAAGAAAAAGAGGATTC
TGCTTAACTCGTGTAGCCTGAGTACTATCCTCTGTAGTGACCGCTGGCTC
AAAAAAATCGTTTGCCGTGGTTAGCAAGCGATTTCTTTTGAGATCTTTTG
AGCCAGCGGTCACTACGGAGGATGGTACTCAGGCTACAACTCGTGATGGC
GGTGTTTGAATTTGATAACGTCATACAATCAACCCTTTTATGTGTCTAAA
ACTCCTTCTTTGTGAATCATATTTAAACATTATGAGTTCAATGATCTGGC
GGATACAAGCTCAAGATTTCTGGGGTCAATGACCTCACGGGTACAAGGCC
AAACATTCTCTGGGGTCAATGACCTCAGGGGTACAATTACAACCACTTTG
GGATTGATACTACTTTATCTGTACTCAAAATGCGTCCCCATAACCCCTTC
AACGGTTTATCTCTGCTACACTTTGCAATATCGTCCAGAATCCGCCCTTG
CTTACATCATAACATGACAGTAATGTTTCTGATAACTGCTGCTATGGGTG
AGATGGTTATGTTAGATAAATCATCAGAACATGGCAGTAACGTTTCTGAT
AACTGATGATATGAGCGAGACGGTTATGATAAGATAAATCTAATTCTGTA
TGTCTATACATGTAGGAGGATTTCGTGATCATAATGACGTCAGCTGTAGA
AGACATGGCTGTGAAAGTGTCCAGGGGCAGGATCTATCCATGGGATTTCG
ACAGGAAGGGTAAGTCACGTCTCTTTTCTTTTTTGTGTGTGTGTGGGGGG
GGGGGGGGGGGGGGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGCTTTGCATTCGTTTTGATATCAAGTTTCGATGTTGCCATGG
GAAGCCAAATACCTGGAAACCAGCCTTCTCCATATGTCAAATATCTATAA
ATGCAGAAATTTTGGTACCTTTGGAGCGAAGTAAAACATTTAACAAATCA
TAATCAAAGGAGGGAAAGAGAAAAAGTATTCCTTCGTTAATCAAAGTCAA
AGTCGAGCTTTAATGCACAACAATCGTTAATTGTTCATCTTCTTGTTTTG
CATGATAGGAAAGCTACCAGTCTGGACTTTCCTGAATCGGATGGAATTTC
TCGGGTCATCCCAGCAGTTGTTCTTTAAGGCTGACAACGACATCAAAGAC
ATCAAACAAGCTATAGCCTCCTTGAAGCAAGCGATGGCCTACGAGTTGCG
CTTTGTCCGTTGCCAAAGTGTTCAGTTCAGTCCCGACTTTTCTGAACTGA
TGACGTTTCCAGGTAGAGCTATCCGTGTCGAAGCCAAGGTGATCTTCGTC
GGGAAAACATCGTGGGTGTATGAGACGAAAATTCTGGATCAAACGACCGA
AAGGGAACTAGCCAATCGGCATGTTCAGACGGTCAACATCGATAAGAAGA
CACGCAGGCCAAAGCCGCTTCCTGATTGGGTAACGGAGCGCTACTCGCAC
CTGACGTCACGGCCACGCCCGACAACGGTTCAAACCTTCGACCTGTCCGA
TGCCGAACCAGCGTTCGTCTATCCCGTAACGGTTGCCCCTAGCGACATCG
ATGCGAACATGCACACCAACCAGTCTCAGTACGCTCGCTACTGTTTCAAC
TGCGCTGCAACGGGGGCAAAGAAGGGGGCATATTCCATCATCAGTGGAGA
CCTCCTGGACTATGACGTCATAAGTGTCGACCTGCTGTACCAGAAGGAGT
CGCGAGAGGGCGACTCCCTGCGGGTGGAATCCTGGGAGGATGCCAAGGAA
CCGGATACCCTCAAGTTTCAAGTAAAGAGAGGGGAGGACAACATCCTGCA
GTGTAGAATGCGCTTTCGTATACCCAGTGTCCCTGACATCGAGAAGGCCA
AACTTTGAACGGATTGATTCCCATTTTAAGTGAAGTCCATGTTTAAATAC
TTAATCAGGACATGTATCAAAGTTATTAGATATTATAACAAAAAAAGATA
TCAAAGTTTGGCAACAAGTGAATTCCATAACCATAACATACTCTTAATGT
TGTCCTAATCTTTTTGATATCGTGAAATCTTAATTCTTTGACCAAAATGT
TTTTGTGTAATGTTGCATTTCCCACATAGTACAAGAGCATAACCATAACC
ATAACTCTATTTTAAATTCTTTGTTTTTTAAACCACAGTATGGTTTTACT
CAATTTTGTGTAATTTCAATTGTTTTGTGAAAAAAATCGTCCAAATGTAA
GCATTATATGTTATACTGTTTAATAAAGCACTCAGACATTGGGATAGTAT
GTGAGCGGAT Coding sequence (CDS) from alignment at Sc0000000:2581339..2584948- >transcript:BL82040_cuf0 ID=transcript:BL82040_cuf0|Name=transcript:BL82040_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1752bp|location=Sequence derived from alignment at Sc0000000:2581339..2584948- (Branchiostoma lanceolatum)
ATGACGTCAGCTGTAGAAGACATGGCTGTGAAAGTGTCCAGGGGCAGGAT
CTATCCATGGGATTTCGACAGGAAGGGAAAGCTACCAGTCTGGACTTTCC
TGAATCGGATGGAATTTCTCGGGTCATCCCAGCAGTTGTTCTTTAAGGCT
GACAACGACATCAAAGACATCAAACAAGCTATAGCCTCCTTGAAGCAAGC
GATGGCCTACGAGTTGCGCTTTGTCCGTTGCCAAAGTGTTCAGTTCAGTC
CCGACTTTTCTGAACTGATGACGTTTCCAGGTAGAGCTATCCGTGTCGAA
GCCAAGGTGATCTTCGTCGGGAAAACATCGTGGGTGTATGAGACGAAAAT
TCTGGATCAAACGACCGAAAGGGAACTAGCCAATCGGCATGTTCAGACGG
TCAACATCGATAAGAAGACACGCAGGCCAAAGCCGCTTCCTGATTGGGTA
ACGGAGCGCTACTCGCACCTGACGTCACGGCCACGCCCGACAACGGTTCA
AACCTTCGACCTGTCCGATGCCGAACCAGCGTTCGTCTATCCCGTAACGG
TTGCCCCTAGCGACATCGATGCGAACATGCACACCAACCAGTCTCAGTAC
GCTCGCTACTGTTTCAACTGCGCTGCAACGGGGGCAAAGAAGGGGGCATA
TTCCATCATCAGTGGAGACCTCCTGGACTATGACGTCATAAGTGTCGACC
TGCTGTACCAGAAGGAGTCGCGAGAGGGCGACTCCCTGCGGGTGGAATCC
TGGGAGGATGCCAAGGAACCGGATACCCTCAAGTTTCAAGTAAAGAGAGG
GGAGGACAACATCCTGCAGTGTAGAATGCGCTTTCGTATACCCAGTGTCC
CTGACATCGAGAAGGCCAAACTTTGAATGACGTCAGCTGTAGAAGACATG
GCTGTGAAAGTGTCCAGGGGCAGGATCTATCCATGGGATTTCGACAGGAA
GGGAAAGCTACCAGTCTGGACTTTCCTGAATCGGATGGAATTTCTCGGGT
CATCCCAGCAGTTGTTCTTTAAGGCTGACAACGACATCAAAGACATCAAA
CAAGCTATAGCCTCCTTGAAGCAAGCGATGGCCTACGAGTTGCGCTTTGT
CCGTTGCCAAAGTGTTCAGTTCAGTCCCGACTTTTCTGAACTGATGACGT
TTCCAGGTAGAGCTATCCGTGTCGAAGCCAAGGTGATCTTCGTCGGGAAA
ACATCGTGGGTGTATGAGACGAAAATTCTGGATCAAACGACCGAAAGGGA
ACTAGCCAATCGGCATGTTCAGACGGTCAACATCGATAAGAAGACACGCA
GGCCAAAGCCGCTTCCTGATTGGGTAACGGAGCGCTACTCGCACCTGACG
TCACGGCCACGCCCGACAACGGTTCAAACCTTCGACCTGTCCGATGCCGA
ACCAGCGTTCGTCTATCCCGTAACGGTTGCCCCTAGCGACATCGATGCGA
ACATGCACACCAACCAGTCTCAGTACGCTCGCTACTGTTTCAACTGCGCT
GCAACGGGGGCAAAGAAGGGGGCATATTCCATCATCAGTGGAGACCTCCT
GGACTATGACGTCATAAGTGTCGACCTGCTGTACCAGAAGGAGTCGCGAG
AGGGCGACTCCCTGCGGGTGGAATCCTGGGAGGATGCCAAGGAACCGGAT
ACCCTCAAGTTTCAAGTAAAGAGAGGGGAGGACAACATCCTGCAGTGTAG
AATGCGCTTTCGTATACCCAGTGTCCCTGACATCGAGAAGGCCAAACTTT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:2581339..2584948 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82040_cuf0 |
| Biotype | protein_coding |
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