transcript:BL79868_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79868_cuf0
Unique Nametranscript:BL79868_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79868_cuf0

>transcript:BL79868_cuf0-protein ID=transcript:BL79868_cuf0-protein|Name=transcript:BL79868_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
HFPFTVLCTSFLLFHLTHAGSESHNVKETTSSKPTVWVVQPGTSGNRKLT
VTKNDQSAIQGHERTAPSTHHNTSAPRRTLVESPSRNQPINAEKTKSTVT
MVTETAVHPPRASDKLREIVDQVT
Run BLAST on NCBI

mRNA from alignment at xfSc0018799:411..782+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79868_cuf0 ID=transcript:BL79868_cuf0|Name=transcript:BL79868_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=372bp|location=Sequence derived from alignment at xfSc0018799:411..782+ (Branchiostoma lanceolatum)
CATTTCCCTTTTACAGTATTGTGTACATCTTTTTTATTGTTTCATTTGAC
ACACGCAGGTTCTGAATCACACAATGTCAAAGAGACTACCTCCTCCAAAC
CAACAGTATGGGTTGTCCAGCCAGGGACTTCAGGTAACCGAAAGCTCACA
GTGACCAAAAATGACCAGAGTGCAATTCAAGGTCATGAGAGGACGGCACC
ATCAACTCACCACAACACATCAGCACCAAGGAGAACACTTGTAGAGTCAC
CCTCCAGGAATCAACCAATCAACGCAGAGAAGACAAAAAGCACTGTAACC
ATGGTTACAGAAACAGCTGTCCATCCACCCAGGGCTTCCGACAAGCTGAG
AGAGATCGTGGATCAAGTTACC

Coding sequence (CDS) from alignment at xfSc0018799:411..782+

>transcript:BL79868_cuf0 ID=transcript:BL79868_cuf0|Name=transcript:BL79868_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=372bp|location=Sequence derived from alignment at xfSc0018799:411..782+ (Branchiostoma lanceolatum)
CATTTCCCTTTTACAGTATTGTGTACATCTTTTTTATTGTTTCATTTGAC
ACACGCAGGTTCTGAATCACACAATGTCAAAGAGACTACCTCCTCCAAAC
CAACAGTATGGGTTGTCCAGCCAGGGACTTCAGGTAACCGAAAGCTCACA
GTGACCAAAAATGACCAGAGTGCAATTCAAGGTCATGAGAGGACGGCACC
ATCAACTCACCACAACACATCAGCACCAAGGAGAACACTTGTAGAGTCAC
CCTCCAGGAATCAACCAATCAACGCAGAGAAGACAAAAAGCACTGTAACC
ATGGTTACAGAAACAGCTGTCCATCCACCCAGGGCTTCCGACAAGCTGAG
AGAGATCGTGGATCAAGTTACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79868gene:BL79868Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79868_cuf0-E1BL79868_cuf0-E1-1564476830-545290Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79868_cuf0transcript:BL79868_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0018799genomexfSc0018799:411..782 +
Properties
Property NameValue
Transcript idBL79868_cuf0
Biotypeprotein_coding