|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79856_cuf1 >transcript:BL79856_cuf1-protein ID=transcript:BL79856_cuf1-protein|Name=transcript:BL79856_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=119bp
MLYKHHPLECPSCFLFCFFFVPSMNVANVVENRSQMYVPCFTRAISILLV
LFLTEVFEKEQGVLYVRYGVRQDRSISMWVQLHVFGLSLLLHIAFITECT
GVVCDKATVLYYSSLFTIL Run BLAST on NCBI mRNA from alignment at Sc0000036:313654..322437- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79856_cuf1 ID=transcript:BL79856_cuf1|Name=transcript:BL79856_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=8784bp|location=Sequence derived from alignment at Sc0000036:313654..322437- (Branchiostoma lanceolatum)
ATTACAGACAGCAACAACAAGTTTTTTGGAAGACTTGGTGAGTTTATTAA
GTTATCTTTCATAAATAGACGCAAAGATACATCACAGAAAGGTATTCCAG
TTGTTCTTAGGTGTAAAAACGTCCCCTTTGTGTGACAAATTTTGCTCAGA
AGCTATGATTTGTTGAAAAACAGACGCCGTGTTTGAAAAGTGGGAGGGGG
GCACAGCTCTCTCGAGTTGTTACACGCAAACTGAAACTTCAGCATATGGT
TTGTAAAGTCAAGAACATTTGATATGTAGGACAATGATAAAGTCTATGAT
ATGAGGGTGGAGAATATACAGAGGGTCACTTAGCCTAGTGATGATTTAAC
CACTACGACATTGAAGGTGTAGAGTATCATATACGTATGCAACTGTTGCA
TATACATAAAACCTCCTTGTATACATGTAGTATACATGATGTATACATTT
TTATATGGGGTAACAAACATATATACTAGGAAGTGGCAACAAGACAGGAT
GATCCTGTCAGCAGTAGAAAAAAGTGCACTCTTGACAGGATGTTCCTGTC
AGCAGTAACAAAATGTGCACTGCTGACAGGATGATCCTGCCAGCAGTAGA
AATACATGTACATGTGCACTCTTGATAGGATAATCCTGTCAGCAGAACAA
AATGTTGATAATGATTGCCTCCAGCTGCCCAAAATTGCATAACATTACTA
AAAGTGTTAAACACATTTTGTGCTGTTCGTCTAACAACGTAATTTCTGCC
GTCACCTCTGTACCGTGAACTCATCATCACCGTGAAAAAACCTGTTGTTA
TTTTTTATGATTCCTTCACACATCTTTTCTGTACAGTGTAAATCACTTGC
CGCCACTCTGTGAAGTTAACTCAAAGTTCAGTGAAGATGTCCATTTTCCT
TACACTACATGAAATTTTGCTACCGTGAAAATAAAGTGAATTACAGTATC
CTGTCAACTCACTGCATTTTGATTTCATTCCAGATTGTGATGTTGTGCTG
ACGGAGCAAGTTTCCAAGACAAGAAAGAAATTTATTATATTATAATCCAA
AAGGGCTACAGCTAGCTAGCAAATAGTGAGTTACAGGTTACATATAGTGT
TTAACATCTAAGGCCACAGCAAGTCAATTTTATGGATGACATCCTCTGTA
GACTCCAAATTTAGTGCGCGCGGGCGAAAAAAAACTAGGCGGGCGAAAAA
AAACAAGACAGCCACATTTTCAAACACTAATACCATAAAGCATGTAAGAA
GAATTGAAGCGATAAAGCACGGTATTACAGCAAGTCTTTTATCTTTGTAT
TCAATAAAACATAACTAACACTTTTTCTCCCAGCATAAATGAACTTTGAA
GTTAACTTGTGTTGTTGTTGTGACCTTTTTCCCCTTGCAGGATTACTACA
TATTGGAATAGAGAATGAGGCAGCTGAAGGGAAAAGCAAAGAAAGAAACC
CGTAGGGACAAGGAGGACAGGAAACAGACATTCCATGATGCCAGGAATCA
GGTAATTAAACTGTCTGGTGAAAGTTCAGTGCACTAATTACTTGCATATG
CAGTTGGTATTCATGTCAAACCCTACATACAATAGGTGATAACTGTGTAA
TACTGAGAGGGAGTGCATTTGATGTGCTAAAGTTTACACATATTTCTCTG
GTTATTTTGTCAGCTTACATGTACTTCTGTCCATGATCTGTACTTGCAAG
TACAATATGATATTGTGGTTTGTTACATTTTTTACCTTGGCATTTGCAAG
TTGATAGATATACTTGGCGCAGAATACAATGTATGCAGCTTGTCGTCATT
TACCAGCTTTGCTACCTGCATATTAATTTTTCATTTATCAACATTTATCA
GGTCAGTAATACCAGCCTAGTGTAGGATATATAATATATATGACATTGGG
TATTGATGTACAATGTATGTTTACAATGTAATGTTCTTGTCTGCTTCAGT
GATACAAGCATATGGAAGGTAACAGTTACTCAAGCAACTGAATACAATTC
GGAAGATTCTATTTTGTTTCCAAATTTTATCCAGTTGCTTGAGTAACTAT
TACCTTGCGTATCTTATTACCTGGATGTCTAACATTCATCGACGTATTGT
CAAATGTATGTTTTATATTCCCTAGGTGGTGACCATTGTGCTGCCAGTGC
TTGGGGCAATCGTTCTGCTCATCACTCTCTTTGTCTACGTGAACACCAGG
CCAAAGGCATGAGACAGGAAACATTTTTGCTTCTTGCCATGCATTATGAC
CATCGCACCTTTACATAGGGGCATCCAGGCTTTAAGATAAGATTTATGTA
TAGACAGGGCGTCCAAAAATTTGTAGGCGTTGGGTTCCAGGGTTTGGACC
AGACTTGCCCAATGTGCTTTATGGGTTAACAATTACCTGGTAGCTTTGCA
TGTCAATCAATTTTCATGCTGTCTTAGTGTCTGGTATGGGGAAAAAACAC
CTGTGGCATTGTGTGTGTGTGGTGGGGGGGGGGGGGTGTAGTTGGTTGGA
CACATGTAAATGTGTAATACTATNGGGGGGGGGGGGGGGGGGTGTAGTTG
GTTGGACACATGTAAATGTGTAATACTATGTGACTACCAGAGAAACAAGG
TGCCCTCTTGGTGTCCCCAGCAAAAGGAAGGCGTCTTATTTGTTCTCTAC
ACTATTTTCTTAGTAGGGCGTCCAGAAGACGCTCTGACACCCTGCTAGCA
AAGTAGCCTGGGGTTTGGTCAGCTGGACAGCACACAAGAGTAAAGTTCTA
GTTTTACTGTTAGTCATTAATGTAAAGTATAGGAATTTAGCACAAAAGGA
TCAAGTACATGCTGCCATGAGATTTTTATAAAGCATTCTGAGATTGGCTG
AAAGGGAACTTGTGCCCAAACAATCTTGCCAAGCATGTTTACATTGTTTG
TATAAGCAAGGAGGTTTATATATATCTATATAAAACCTCCTTGGTATAAG
ACAGCCAATACGAGCAACACAAGAGTATATTTACAAACTACACAATAGGA
ACAGACAGAAACAGATTGACTATTGTGATACTTCAGAACTTTTTAATATA
TGATATTTGACAAGATTTATTATCAATATATCTTGAAAGTGTGCTATAGG
AAACTGGATGGTATTGTGCCATGGCGGTGAATAATAGAGTTAGGGGGTCA
GTTATCAAATCATATTTTCTACTTTGTGATACTAAGAATTGTACTCGAAG
ATAGAAAAATGATACTTGTATGAAATGTGTGAGTACAATAGACCGATCCC
GAAGCCACACCCCTGTTCTATTTCGAACACCGGACAAGTATGGCCGCGGC
CGCTTGGCTGATAAGAATATTGCTCTGAAACCAAACCTGCCAAAGAAAGA
GGCAATTACTTGTTGAATGCTACATGCACTGAGTAGATTTGTTTGAGGAA
GGGGTGAATGTAGTTGTGGTGAGAGCGTAATGTTTTCGGTCAATGTGGAT
GTGTTAGGCACCACGTAGCATTACCTTGCTGGTGGGCAGGTGTGCCCCTT
TGCTGACAAGCAGCAAATGCGCGTGTAAAGAAAAGTATGTATATCTGTGG
CAGGTTCCCCACTGCGTTGCCTGCCTGCATTATAGCTGCATGATATTTGG
TAACAAAGAATTGAAACGCCCTTCTTTAACTGTTACCCTTTCAAATTTTC
AGTTTCCACAAAATACGGAAGAGACAAAAAACTGTACAAGCAGACGTTGT
AGAAGTTGGAATGCTGTACAAGCACCATCCCCTTGAGTGCCCGAGCTGTT
TTCTTTTTTGTTTCTTTTTTGTCCCGAGCATGAATGTAGCCAATGTCGTG
GAAAACCGGTCACAGATGTACGTACCATGCTTTACACGTGCCATTTCTAT
CCTACTAGTGCTGTTTTTGACGGAGGTGTTTGAAAAAGAACAGGGGGTTC
TATATGTTCGATATGGTGTTCGACAAGATCGGTCTATTTCAATGTGGGTA
CAACTACATGTATTTGGGTTAAGCTTATTGCTTCACATAGCTTTTATAAC
GGAATGCACAGGTGTGGTTTGTGATAAAGCTACTGTCCTTTATTACTCTT
CTTTGTTTACAATTCTTTAAACTGGCACTAAGGTTGGAGATTGTTAAGTG
TTAGGGATTTGTGTTTATATCCGATCTCATGGTCAACTTTTTCCAGTTAA
AAGAGATGTTCTTTAACCTTCAACCTGCTAAGATTGCCGTTTGGCAGAAA
ATTTGTATTGGTTATGGGGTTAGGCAACAGGAAGAAGGTTAGATGGTCAT
GAAACAACATATTTTCCACACTCTACTGCATCTGTACTGTAATTATTGTG
ATTTTTTTTGTAAAGGTTCAAAATAAAGGACTGTCCTATAGCCTTTTTGA
GGCCGTAGGGGCAGTGGGTTGTTATCCACTGTGTCTTGGTCACGGTATTG
AAAGGCAGAGCCCATCCCTCTCCTTCCACCACCTTTTACCTCCCCAACCA
AAGTCAGGTATGCATTTTTTCACCTGGGTGAAGTGAAGAAAGTCGTGTTT
CAAAAAAGTGCCTTTCTCACAGCATCTAGCATCTCGATAACACATCCTAT
CCTAACCACTCAATGGCTAATGCCACTATTGTATTTTTGTAGATAGACAA
AGAGTGTTCTCTGATACAGGCTATAGAGAGTGCCAATCACAGACATGGGT
TGAGAATTACACTGTTTATTATACTGTTCTTGTACAGATGAAAGCTGTAA
TCAGTAACAGTACAATCACTAAACACGCCCAGATGTTAGCGTATCAGTCG
AGATACATGTGTAAAGCTAAACGCATGTATTAGTTTAGAACATTACCCTG
AATAGACAGCACACAGAGAAAGTTTCAATGCAGAGCTTGTTTTTGTACTA
CAAACAAAAGTTCCAAACCTGTTTACTTTAAATTTGTAACAATACATTTG
TACCCAACTGTGCTAAAGACTGGTTAATGACTTGTTCAAGTTATAAAATA
CATGTGCACACATCTGATTATACAAAGAATTACTACGATTCGCAAACTGT
GGAAAGCATATCTTTACATATTAATTATGATATGAGGTTGTCATAGCTAT
CAGTACTGTATTCTAGATGTTGCTACGTTGGTATGTTTCTTACAAGAACA
CTTTATAATATCCTTGGTTTCTGACAAGCACACCTGCTGTCAATGTTTCA
GATGTAAAAAAAAGAAGTTGATAAAAACTTTATCATCTAATGCTGTTTAC
GTATACTAAGTATACATGAGTACAGAAGAGTGTAAATTCAATACTGTAAA
TGCAGAAATGTTCGCGGTAGTTTTATATTCGCGGTTTTCACGGCAACCGT
TTCAACGCGAACTTAAAACTACCGCGAACATTTTTGTCCAATACTGTAAC
AGTAGCAGTTTAGCGCTGCCGCAAACTTAAAACCACCGCGAACACCTCAT
TTTCGCCTTAGGGCAAATTAAAAACCACGCAAACTTAAATGCATTTACAG
TATATGACGACCTGGACTTCTTCAAACAAGGTTTGGTCTAAGCAAGGACT
TCACAAATGTAGTAGTAAGAACGTGGGCAACTACTATCATTCCAGCGGTA
GTCCTTTTTGGATAGATGTGGACACAGTTTTCCACTGTGCCACCGTTTGG
TTCGCCTGTTCCCCAAATCCCATCACCAGCCAATAAGGTGCCGTCATCCC
AAACCCACACTCCCTCCGTCTCCACGTCACTCAGCCCGATCCAGGTGTTT
GTATGAGTTGTAGCTCTCACGTGATTGGCTAAGAAGTCGTGTGTCCAATT
AGTCTTCACTGTTGCTAGGCGACCACCCTCTCCATGACAAGTATCCCGTG
CCTCGCTGTACGGCTTTTGGTCGGTGGAGAAGCGGTAACAGGTCCTCTGG
AACTGCTGGTAGCCAGCAGGGCAAGTGGTAGGGGACTCTGTAGTGTTACA
GGTGAATATACATGTACCTGTGTCCCTGATTCTCTCCTCCAACTGTGCAA
CTCGCTCCTTCAGATTGTCTGTGATGTTCTTCTGTTCAGCCAATAGACTA
GACAGGCGACTGATCTGCAAAATAGTTCCAAACTGTCAGGTGCAACTGTA
ATGATATGTAGGGCAGGTGGCAGTAGTGGCTAGATATTGGACCACAACAT
GTCACATCAGTTCAGAATCTAACAGAAAACGTAACAAATTTAAAGCTACA
GAAAGGCAATTAATAAGCTAAATTGTTATATCCGTAGGAAGTGACCGCAT
ATAGTGCCAAACGTTAACAATCAAATATATAAAGATACAATTTTTGTTAC
ACATTATCAAAACTGAATTTCTTACAATAGAATAAAGCATTCTGTGCCCA
CAACGTTTCACTCTGAATAGGTAACATCAATTGTGTGGTTAGATGTTACC
TCAGACGTCGCCGAGTCGTTCTGAAGTCGTGCGATCTGCAACTGTTGAGC
GATCAGCATAGCCTGGTTGTTCGCAAGTTGCTGTAATGAATGTTCAGAAA
TTCTAGTTATTCCCCAATGAGAAAAAATAATGCGTGAATTCGCAGGCCTG
AAATAATTAAAAAGCATACGGTCGCCCTCTTTCAATTGTTTTCTTGGTTA
ACCCTAGAATTCACATTTGATTATTCCGACAACATTCTAAGGACAGCAGT
TTAACACAACATTGGAAATGTTTTGCAAAGTCAAAGCCAATGTAATGCTA
GACGTACTGTACTTCGAAATACTTGTTCTTACTCCGGCGTTTCCTACACG
GAATACGTCATATAAAAGCTGTATAAAACCTTTTGCAGGATCTGCGTGTG
ATTTAAACCTTTAATAGAACCGCACGTTTGCTTATTATAAGGGACAGTTG
TAAGACAACATTACTATTCAAGATGGCTGACATACCCCGTCGAAGTTGCA
AGTCTGGCTTCCAACGTTGACCACTGGATTACAGACACATTTCTCTTCCG
AACCCCGGCAGTTTAATGTCGGTTGTCCCTTGCACTCCAAGGCAAAAAGT
ATCAGAAGCATACAAGTCAGAGACATTTCTGAAATGTTTGCAAGTCACTC
ATACAACAACCTTAATTTTCAGACGTCAAGGAACTTAGTCGGTATTGTTT
TAGTTCCGTGTAGATTTCAAGGTGTTTGTACATGTGTAATTCTATCCTGT
TGTTCAGGTTTCTGCTTCGGCCAATGAGCTGCTGTGTCCCTAAGATTTGC
ATACCCTTTAGTTGCGCAACCCTGCCAGGTAACCAGTCAACCGTTAGTGT
TAGGAATGTTTGGAACGCCTCCCCATTGTCAACATTAAGATTCTGGACAG
GTGTGCTTATATTGTTTTGCGTGTGTGTTTGCGTGTGTGTATGTCTGTGC
GTCCGGATGCTTAAAGTCAGCATAACTGAGGAACGTCTGGATGGATTGTA
ATGATATTTAGTATGTGGGTAGTAATTATAAAGTAGACGAATTAACCTTT
TCAAAAAAGTAAGTCGCCCTTTGTCCCTCTGTTTGGTACCAAATGGCTAT
TTTGAGGGACCTGGCCCATGGACTATAGGTGTTGGGAGGAGAAAGGTCAA
GGTCGATTTTGGGCCCCCTGGTATGTGCCATTGGAACTGCAATGGCGTAT
TTGTCAAAATTTTCTAAGGAGAATAACTTAAGAAAGGAGCAACAGATGTT
CATGTTATTTACCATGCAGGTATCTTAGACAGAGATATACACAATGAATT
GCAAATCATGAAAAAAACACCGAATAAAACCACCGAGTGAGCGAAGCAGG
CGTTATGACACCATATACATCCCGGGGCGGGTCATTAACCCTTAATTATT
AGATTTATGGTGATAAATCTTGGGTCCCTTGACTGGTTTGTGTGGTGCTC
TGACACATAAAACATAAGACCCGGCAAATAAAAAAAACACTGATTATAAA
AACTAAGGTTCATGGAGATTTGGGGTCTTGTTTACATTGAGAAAAGTTGC
ACCAAGTAAACGTTACCTTTTTACAAACAAGACTTATTATGTGGATAAAC
AACAGAGACATTTCAGTTTTAAAGAAGGTTTTTTTTTCAAAAGCTGGTGG
CTATCATTACAAAAAAACAAGACTGCTCAGTTTTTAACTTCAATGATTAT
AATCATGTCTCGTCTTAAATTTTGTCATCTGATGAAAATGATTATAAAAT
AGAGTTGCTTAAATACAAAATCTCAAATGTAAAGTAATAATATCATTTTT
TATTCATGCCACTACGTATACTACATGTATTTTACCCTGTCGAAAGAGGA
ATCTTCATGCATCTGACTTTAAGGCTAGCAAAGGGGTTTATTTATGACAG
CTGACTTTATTACTAACAGAAGTTATAAGCATATTAAACATCTATTCCTG
GATGCCATATTCGTTACAATTTGTCACAACACAGCTGTTGTCCTAACACA
GTTGTAGTTAACATGCAGTACGTAGCTAACCGTAGATTTCACAAATGTAG
TAGTAAGAACTCGGGCATGTACTATCATTCCAGCGGTAGTCATGAAAGCC
GTATATTGATAAGTGAGCACAGTTTTCCCTTGTGCCACCGTTTGGTTCGC
CTCTCCCCCACATCCCATCACCAACCAATAAGGTGCCGTCATCCCAAACC
CACACTCCCTCCGTCTCCACGTCACTCAACCCGATCCAGGTGTGTGACTG
AGCTATGGCTCTCACGTGATTGGCCAGGAAGCTGTGTGTCTCGTTAGTCT
TCACTGTTGCTAGGCGACCACCCTCTCCATGACAAGTATTCCGTGACTCA
TTGTACGGTTTTTGGTCGGTGGAGAAGCGGTAACAGGTCCTCTGGAACTG
CTGGTAGCCAGCCGGGCAAGTGGTGGGGGACTCT Coding sequence (CDS) from alignment at Sc0000036:313654..322437- >transcript:BL79856_cuf1 ID=transcript:BL79856_cuf1|Name=transcript:BL79856_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=360bp|location=Sequence derived from alignment at Sc0000036:313654..322437- (Branchiostoma lanceolatum)
ATGCTGTACAAGCACCATCCCCTTGAGTGCCCGAGCTGTTTTCTTTTTTG
TTTCTTTTTTGTCCCGAGCATGAATGTAGCCAATGTCGTGGAAAACCGGT
CACAGATGTACGTACCATGCTTTACACGTGCCATTTCTATCCTACTAGTG
CTGTTTTTGACGGAGGTGTTTGAAAAAGAACAGGGGGTTCTATATGTTCG
ATATGGTGTTCGACAAGATCGGTCTATTTCAATGTGGGTACAACTACATG
TATTTGGGTTAAGCTTATTGCTTCACATAGCTTTTATAACGGAATGCACA
GGTGTGGTTTGTGATAAAGCTACTGTCCTTTATTACTCTTCTTTGTTTAC
AATTCTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:313654..322437 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79856_cuf1 |
| Biotype | protein_coding |
|
