transcript:BL78437_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78437_cuf0
Unique Nametranscript:BL78437_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78437_cuf0

>transcript:BL78437_cuf0-protein ID=transcript:BL78437_cuf0-protein|Name=transcript:BL78437_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=119bp
PSEDVPGPSAPPSEDVPGPSAPPPEDVPGPTAPPPEDVPGPTAPPPENVP
VATPETDFAPQTRVAVRKRGIIRQAGSRKRPARMTPQPPPSEDVPSRSLT
TPGPPTTTRCRKRPNRLDL
Run BLAST on NCBI

mRNA from alignment at Sc0000365:150984..151904+

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78437_cuf0 ID=transcript:BL78437_cuf0|Name=transcript:BL78437_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=921bp|location=Sequence derived from alignment at Sc0000365:150984..151904+ (Branchiostoma lanceolatum)
CCATCTGAGGACGTCCCGGGCCCCAGCGCGCCACCATCTGAGGACGTCCC
GGGCCCCAGCGCGCCACCACCTGAGGACGTCCCGGGACCTACCGCACCAC
CACCTGAGGACGTCCCGGGCCCCACAGCGCCACCACCCGAGAACGTCCCC
GTGGCTACACCAGAGACTGACTTCGCGCCACAAACACGGGTGGCGGTCCG
TAAGAGAGGCATCATCCGGCAGGCTGGAAGCCGAAAGCGGCCTGCAAGGA
TGACCCCGCAGCCGCCACCATCTGAGGACGTCCCGAGTCGCTCCTTGACA
ACGCCGGGTCCACCCACCACCACCCGATGTAGGAAGCGACCGAACAGATT
AGATCTGTAGAGTCCATTTCTTGTAAATATGTTTTAATATACATGTAATG
TATATTTCAAACTGTTTGATACATTTCTAACATTGGCTAAGTTATTTTTA
TATTAGATTCCAACTTGCGTGAAGAAGTCGAACCTTTAAATTGCATTTAA
GTATAGTTTAGTCTTTAAACGTAGTAAGACTGTATGTATTCAAACCTGTA
AATTGCATTAAGTATAGTTTAGTCTTTAGACGTATGTAGTAAGACTGTAT
GTATTCGAACCTGTAAATTGCATTAAGTATAGTTTAGTCTTTAGACGTAT
GTAGTAAGACTGTATGTATTCGAACCTGTAAATTGCATTAAGTATAGTTT
AGTCTTTAGACGTATGTAGTAAGACTGTATGTATTCGAACCTGTAAATTG
CATTAAGTATAGTTTAGTCTTTAGACGTATGTAGTAAGACTGTATGTATT
CGAACCTGTAAATTGCATTAAGTATAGTTTAGTCTTTAGACGTAGTAAGA
TAACGTTATATCTCGCTCTTTTCACTGTATGTATTCCATTGCTTTGTTTC
CACCATGCCCCGAACGAGGAG

Coding sequence (CDS) from alignment at Sc0000365:150984..151904+

>transcript:BL78437_cuf0 ID=transcript:BL78437_cuf0|Name=transcript:BL78437_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=360bp|location=Sequence derived from alignment at Sc0000365:150984..151904+ (Branchiostoma lanceolatum)
CCATCTGAGGACGTCCCGGGCCCCAGCGCGCCACCATCTGAGGACGTCCC
GGGCCCCAGCGCGCCACCACCTGAGGACGTCCCGGGACCTACCGCACCAC
CACCTGAGGACGTCCCGGGCCCCACAGCGCCACCACCCGAGAACGTCCCC
GTGGCTACACCAGAGACTGACTTCGCGCCACAAACACGGGTGGCGGTCCG
TAAGAGAGGCATCATCCGGCAGGCTGGAAGCCGAAAGCGGCCTGCAAGGA
TGACCCCGCAGCCGCCACCATCTGAGGACGTCCCGAGTCGCTCCTTGACA
ACGCCGGGTCCACCCACCACCACCCGATGTAGGAAGCGACCGAACAGATT
AGATCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78437gene:BL78437Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78437_cuf0transcript:BL78437_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78437_cuf0-E1BL78437_cuf0-E1-1564476830-449603Branchiostoma lanceolatumexon
BL78437_cuf0-E2BL78437_cuf0-E2-1564476830-449605Branchiostoma lanceolatumexon
BL78437_cuf0-E3BL78437_cuf0-E3-1564476830-449607Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000365genomeSc0000365:150984..151904 +
Properties
Property NameValue
Transcript idBL78437_cuf0
Biotypeprotein_coding