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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78368_cuf0 >transcript:BL78368_cuf0-protein ID=transcript:BL78368_cuf0-protein|Name=transcript:BL78368_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=438bp
KQAASKIDSLGTPYDYNSVMHYGKGAFARGGDGVTIKTKDVSQQYVIGQR
QRLSDIDIKQLNLRYRCGFCYVRDGASYRGTVSETKTGKTCQRWDSQTPH
GHKYTPADYPSSGLEQNYCRNPDGHTGLWCYTTDPSTRWEDCDVPVCGSS
DVPTEAPKCEDKLMDCHDLKGHCSIEWVKESCPRTCGKCGGTPTASPTAS
PTASPTASPSASPSASSSASSSASHTASPTASPTASPTASPSASPSASPS
TSPTGAPTVAPSCEDKADYCPSAISYCSNSLYTAYMEEYCPKTCGMCGGV
SPTEAPGCEDLATNCHSLKNYCSTEPVMKEYCSKTCGMCGGTASNADPNA
AHNAKAPCEDMHPKCPQRKGHCGKRRIKKYCPMTCGTCGVGGVVLAAGPN
AARCEDKLPMCPQRKGHCGKRRMRKLCPKTCGKCARAI Run BLAST on NCBI mRNA from alignment at Sc0000031:1032969..1036583- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78368_cuf0 ID=transcript:BL78368_cuf0|Name=transcript:BL78368_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3615bp|location=Sequence derived from alignment at Sc0000031:1032969..1036583- (Branchiostoma lanceolatum)
AAACAGGCCGCTAGTAAAATCGACTCGCTCGGGACTCCTTATGACTATAA
TTCCGTCATGCACTACGGAAAAGGCGCTTTCGCGAGGGGGGGCGATGGCG
TTACCATCAAGACCAAGGAGTAAGTCTTCTTATCTGTACTTGACTTTTTT
TTACTTATTGCGATGATCTTGGCTGCTTTTGATTCATGGAGGCACGACAA
CAGATAAACATCCTAACTTTCGTTTTAGATTTATCTGGCTTGTGGCTCGC
TGGTGTAAGCCCGTAACCTCTTCCACGTAACACATCGCTTGTCTCAAGTA
TCGATACTTTGAAGCACAAGAATGGCAAATGCCAATCTGTCATCGAAGAG
TTGCAAACATCCAACTTTCTCATTTCCCCTACACCCCCCCCCCCTCTAGC
GTCAGCCAGCAATACGTGATCGGACAAAGACAGCGTCTCAGCGACATCGA
CATAAAGCAGCTGAACTTGCGCTACAGATGTGGTGAGTGGAAGGTAGAAG
CACCCTCTCCTACCCGAATATCACCTGCTCAGTGTTGCAGCCATAGAATA
CTTGATTACCATGATAAATGAAGGCTTTGTTTTTGGATGTATCTATGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTAT
GTGTGTATGTGTGTGTGTGTGTGTGTGAGTATGTGTGTGTGTGTGTGTGT
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCC
AAATGTTTGTAGTCAGCATAACTTAAGAGTAAGGAAGAGATCATCAGCGA
CGTTCTTTTGTGGGCACCAAAACATGGACATGCAAGTGTAGGCAGACCTC
GCACAACCTACCTACAGCAGCTGTGTGAGGATGCAGGCTGCAATTCAGAA
GAACTACCGAGAGTAATGGAGGACAGGGAGGACTGGAGGAGGAGGGTGAT
GTTCATCCGTGACACTCTCACGACAAGATGAGATGATAACTTAAGAACCT
ATTGATGAATTGTGATGATGTTTGGCATGTGGGTAGGTCTTGGGAAGACC
AAGGTCAAAGTCGACTTGGGGGTGACCTTGTGTCTGACGTCTGGTACTGC
AACAGAAGTTCCGTTTTCATCTTCTTTTGTTCTGGACATGACATGGTCTT
GATGTTTTTGTGGCAGATAGCTTTTGACGTGAATTAGAAGAAATGATGTG
GGTTTAGGCTCTCTAACGTGCAGCTTACATTGCCAATGAATGAGACAAGA
TAGAAAGAAATGGCTCGAATTATCAGGTCTCCAATCTCTTGTTTTTTGTA
AATGACAATGACAATAACAATGAACTTGATTGCATATTCATGCCCAACAT
GCCTTGGGCTAAATGCATTAGGTAACATGATGTAAAAGAAAAGGAACATT
GTGCTATATATCTAATTGTGTTAATCTATCTAATTGTGTTAATCTATCTC
ATGTACCAGGATTTTGTTATGTGAGAGATGGGGCATCCTACCGGGGAACA
GTCTCTGAGACAAAAACAGGCAAGACGTGTCAGCGCTGGGACAGTCAGAC
GCCACATGGACACAAGTATACACCCGCTGATTACCCGTCCTCCGGACTGG
AGCAGAACTACTGCCGGAACCCGGACGGCCATACTGGCCTTTGGTGCTAC
ACCACGGATCCCAGCACGAGATGGGAGGACTGCGACGTACCAGTATGTGG
TATGTGTATTCCGTATCGGCCGAGGTATCAGTTCGACCGGGAGGACTGGC
GCCAACCCGAGACAGTTTCAATGCGAAAAGCTCCATGATTTAAGGAAATC
TTATGTCCTCGAATAAGAAGTTGTAGCAAGATGAATTCTAACGTCTGAAT
CCGGTATTTGAATTTTCGGCGCACGCGAAAGACGTTCGAATCCTTCGATG
GAAGCCGGTGCGATACGGTACAGTCTTTAAAACATAGACCGGTCTGGAAC
ACCAGTATCGAACGTTATCCCGTAGGACGGATAACCATAACATTAGATAC
GCATGTAAGAGCTCACATTTGTCAACCCCATGAAAATTGAGGTTGTAAAC
AATAGCCAAGTTCTGCTATTAGTTTTAAAGATTTCCATACTTGTGACATG
CGTGGGGTAGCTAAGGTGAACGTCGCCATGCATAGAATTTACAAAGGCTC
TAAATATTTCATGGAGGTGTGATGTCCACGAACGCAGTGTTGTTTCTATC
AATACAGGTAGCAGCGACGTTCCCACCGAAGCTCCTAAATGTGAAGACAA
GCTAATGGACTGTCACGACTTGAAAGGCCACTGCAGCATCGAGTGGGTGA
AGGAGAGCTGCCCCAGAACGTGCGGCAAGTGCGGCGGTACCCCCACTGCA
TCTCCCACTGCTTCTCCCACCGCATCTCCTACTGCATCTCCCAGCGCATC
TCCCAGCGCATCTTCCTCCGCATCTTCCTCCGCATCTCACACTGCATCTC
CTACTGCATCTCCTACTGCATCTCCCACCGCATCTCCCTCCGCATCCCCC
TCCGCATCTCCCTCCACATCTCCCACTGGAGCTCCCACTGTAGCTCCCAG
CTGTGAGGACAAGGCCGACTACTGCCCCAGCGCGATAAGCTACTGTAGTA
ACAGCCTTTACACGGCGTACATGGAGGAGTACTGCCCGAAAACGTGCGGC
ATGTGTGGCGGTGTGTCTCCCACTGAAGCTCCAGGCTGTGAGGACCTGGC
CACTAACTGTCACAGCCTTAAAAACTACTGCAGTACCGAACCGGTAATGA
AGGAGTACTGCAGCAAAACGTGCGGCATGTGTGGTGGTACAGCTTCCAAC
GCAGATCCCAATGCAGCTCACAACGCAAAGGCTCCGTGTGAGGACATGCA
CCCGAAATGTCCCCAACGGAAAGGCCACTGCGGTAAGCGGCGCATCAAGA
AGTACTGCCCCATGACCTGCGGCACGTGTGGCGTAGGCGGCGTAGTCCTC
GCTGCAGGACCTAACGCAGCTCGGTGCGAGGACAAGCTCCCGATGTGTCC
CCAACGGAAAGGCCACTGCGGCAAGCGGCGCATGAGGAAGCTCTGCCCCA
AGACTTGCGGCAAGTGTGCACGTGCCATCTAGCCAGCACACACCGCAGGC
GTCATTGCTGAGTGCCCCAGCCACGTCTAGCAGACATGTGATAAACATAG
CCTACTGTTACTCTAAAATCCAAGCTCCGTCTCATGTAGGACTATAAGCC
ATGAGATTTTATGAGAATGACTTCTTTCTACATTGCTTTGGTCCCGTACC
CCTTAGATTACCGAAATATACCGTGTCTTCTTGCCAAAGTTATTTTGTGT
TAACACCACTGTTAATTTAGTCATTGCATCTCACCTCTGCTTTAATGTTT
GTAATGTATTTTTCTGTTGGACATGACTACACATTAGCGTATCGCCTGTC
GTCCTGACATGTCTGTACACACTGTCTGTAAGATTGATCATCATGCCATC
TCCATTTTCCGTGTTAACAACTTTGTTCAGTTACTATCAATGCTAACAGG
CTGTGTGCTGAGCTC Coding sequence (CDS) from alignment at Sc0000031:1032969..1036583- >transcript:BL78368_cuf0 ID=transcript:BL78368_cuf0|Name=transcript:BL78368_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5268bp|location=Sequence derived from alignment at Sc0000031:1032969..1036583- (Branchiostoma lanceolatum)
AAACAGGCCGCTAGTAAAATCGACTCGCTCGGGACTCCTTATGACTATAA
TTCCGTCATGCACTACGGAAAAGGCGCTTTCGCGAGGGGGGGCGATGGCG
TTACCATCAAGACCAAGGACGTCAGCCAGCAATACGTGATCGGACAAAGA
CAGCGTCTCAGCGACATCGACATAAAGCAGCTGAACTTGCGCTACAGATG
TGGATTTTGTTATGTGAGAGATGGGGCATCCTACCGGGGAACAGTCTCTG
AGACAAAAACAGGCAAGACGTGTCAGCGCTGGGACAGTCAGACGCCACAT
GGACACAAGTATACACCCGCTGATTACCCGTCCTCCGGACTGGAGCAGAA
CTACTGCCGGAACCCGGACGGCCATACTGGCCTTTGGTGCTACACCACGG
ATCCCAGCACGAGATGGGAGGACTGCGACGTACCAGTATGTGGTAGCAGC
GACGTTCCCACCGAAGCTCCTAAATGTGAAGACAAGCTAATGGACTGTCA
CGACTTGAAAGGCCACTGCAGCATCGAGTGGGTGAAGGAGAGCTGCCCCA
GAACGTGCGGCAAGTGCGGCGGTACCCCCACTGCATCTCCCACTGCTTCT
CCCACCGCATCTCCTACTGCATCTCCCAGCGCATCTCCCAGCGCATCTTC
CTCCGCATCTTCCTCCGCATCTCACACTGCATCTCCTACTGCATCTCCTA
CTGCATCTCCCACCGCATCTCCCTCCGCATCCCCCTCCGCATCTCCCTCC
ACATCTCCCACTGGAGCTCCCACTGTAGCTCCCAGCTGTGAGGACAAGGC
CGACTACTGCCCCAGCGCGATAAGCTACTGTAGTAACAGCCTTTACACGG
CGTACATGGAGGAGTACTGCCCGAAAACGTGCGGCATGTGTGGCGGTGTG
TCTCCCACTGAAGCTCCAGGCTGTGAGGACCTGGCCACTAACTGTCACAG
CCTTAAAAACTACTGCAGTACCGAACCGGTAATGAAGGAGTACTGCAGCA
AAACGTGCGGCATGTGTGGTGGTACAGCTTCCAACGCAGATCCCAATGCA
GCTCACAACGCAAAGGCTCCGTGTGAGGACATGCACCCGAAATGTCCCCA
ACGGAAAGGCCACTGCGGTAAGCGGCGCATCAAGAAGTACTGCCCCATGA
CCTGCGGCACGTGTGGCGTAGGCGGCGTAGTCCTCGCTGCAGGACCTAAC
GCAGCTCGGTGCGAGGACAAGCTCCCGATGTGTCCCCAACGGAAAGGCCA
CTGCGGCAAGCGGCGCATGAGGAAGCTCTGCCCCAAGACTTGCGGCAAGT
GTGCACGTGCCATCTAGAAACAGGCCGCTAGTAAAATCGACTCGCTCGGG
ACTCCTTATGACTATAATTCCGTCATGCACTACGGAAAAGGCGCTTTCGC
GAGGGGGGGCGATGGCGTTACCATCAAGACCAAGGACGTCAGCCAGCAAT
ACGTGATCGGACAAAGACAGCGTCTCAGCGACATCGACATAAAGCAGCTG
AACTTGCGCTACAGATGTGGATTTTGTTATGTGAGAGATGGGGCATCCTA
CCGGGGAACAGTCTCTGAGACAAAAACAGGCAAGACGTGTCAGCGCTGGG
ACAGTCAGACGCCACATGGACACAAGTATACACCCGCTGATTACCCGTCC
TCCGGACTGGAGCAGAACTACTGCCGGAACCCGGACGGCCATACTGGCCT
TTGGTGCTACACCACGGATCCCAGCACGAGATGGGAGGACTGCGACGTAC
CAGTATGTGGTAGCAGCGACGTTCCCACCGAAGCTCCTAAATGTGAAGAC
AAGCTAATGGACTGTCACGACTTGAAAGGCCACTGCAGCATCGAGTGGGT
GAAGGAGAGCTGCCCCAGAACGTGCGGCAAGTGCGGCGGTACCCCCACTG
CATCTCCCACTGCTTCTCCCACCGCATCTCCTACTGCATCTCCCAGCGCA
TCTCCCAGCGCATCTTCCTCCGCATCTTCCTCCGCATCTCACACTGCATC
TCCTACTGCATCTCCTACTGCATCTCCCACCGCATCTCCCTCCGCATCCC
CCTCCGCATCTCCCTCCACATCTCCCACTGGAGCTCCCACTGTAGCTCCC
AGCTGTGAGGACAAGGCCGACTACTGCCCCAGCGCGATAAGCTACTGTAG
TAACAGCCTTTACACGGCGTACATGGAGGAGTACTGCCCGAAAACGTGCG
GCATGTGTGGCGGTGTGTCTCCCACTGAAGCTCCAGGCTGTGAGGACCTG
GCCACTAACTGTCACAGCCTTAAAAACTACTGCAGTACCGAACCGGTAAT
GAAGGAGTACTGCAGCAAAACGTGCGGCATGTGTGGTGGTACAGCTTCCA
ACGCAGATCCCAATGCAGCTCACAACGCAAAGGCTCCGTGTGAGGACATG
CACCCGAAATGTCCCCAACGGAAAGGCCACTGCGGTAAGCGGCGCATCAA
GAAGTACTGCCCCATGACCTGCGGCACGTGTGGCGTAGGCGGCGTAGTCC
TCGCTGCAGGACCTAACGCAGCTCGGTGCGAGGACAAGCTCCCGATGTGT
CCCCAACGGAAAGGCCACTGCGGCAAGCGGCGCATGAGGAAGCTCTGCCC
CAAGACTTGCGGCAAGTGTGCACGTGCCATCTAGAAACAGGCCGCTAGTA
AAATCGACTCGCTCGGGACTCCTTATGACTATAATTCCGTCATGCACTAC
GGAAAAGGCGCTTTCGCGAGGGGGGGCGATGGCGTTACCATCAAGACCAA
GGACGTCAGCCAGCAATACGTGATCGGACAAAGACAGCGTCTCAGCGACA
TCGACATAAAGCAGCTGAACTTGCGCTACAGATGTGGATTTTGTTATGTG
AGAGATGGGGCATCCTACCGGGGAACAGTCTCTGAGACAAAAACAGGCAA
GACGTGTCAGCGCTGGGACAGTCAGACGCCACATGGACACAAGTATACAC
CCGCTGATTACCCGTCCTCCGGACTGGAGCAGAACTACTGCCGGAACCCG
GACGGCCATACTGGCCTTTGGTGCTACACCACGGATCCCAGCACGAGATG
GGAGGACTGCGACGTACCAGTATGTGGTAGCAGCGACGTTCCCACCGAAG
CTCCTAAATGTGAAGACAAGCTAATGGACTGTCACGACTTGAAAGGCCAC
TGCAGCATCGAGTGGGTGAAGGAGAGCTGCCCCAGAACGTGCGGCAAGTG
CGGCGGTACCCCCACTGCATCTCCCACTGCTTCTCCCACCGCATCTCCTA
CTGCATCTCCCAGCGCATCTCCCAGCGCATCTTCCTCCGCATCTTCCTCC
GCATCTCACACTGCATCTCCTACTGCATCTCCTACTGCATCTCCCACCGC
ATCTCCCTCCGCATCCCCCTCCGCATCTCCCTCCACATCTCCCACTGGAG
CTCCCACTGTAGCTCCCAGCTGTGAGGACAAGGCCGACTACTGCCCCAGC
GCGATAAGCTACTGTAGTAACAGCCTTTACACGGCGTACATGGAGGAGTA
CTGCCCGAAAACGTGCGGCATGTGTGGCGGTGTGTCTCCCACTGAAGCTC
CAGGCTGTGAGGACCTGGCCACTAACTGTCACAGCCTTAAAAACTACTGC
AGTACCGAACCGGTAATGAAGGAGTACTGCAGCAAAACGTGCGGCATGTG
TGGTGGTACAGCTTCCAACGCAGATCCCAATGCAGCTCACAACGCAAAGG
CTCCGTGTGAGGACATGCACCCGAAATGTCCCCAACGGAAAGGCCACTGC
GGTAAGCGGCGCATCAAGAAGTACTGCCCCATGACCTGCGGCACGTGTGG
CGTAGGCGGCGTAGTCCTCGCTGCAGGACCTAACGCAGCTCGGTGCGAGG
ACAAGCTCCCGATGTGTCCCCAACGGAAAGGCCACTGCGGCAAGCGGCGC
ATGAGGAAGCTCTGCCCCAAGACTTGCGGCAAGTGTGCACGTGCCATCTA
GAAACAGGCCGCTAGTAAAATCGACTCGCTCGGGACTCCTTATGACTATA
ATTCCGTCATGCACTACGGAAAAGGCGCTTTCGCGAGGGGGGGCGATGGC
GTTACCATCAAGACCAAGGACGTCAGCCAGCAATACGTGATCGGACAAAG
ACAGCGTCTCAGCGACATCGACATAAAGCAGCTGAACTTGCGCTACAGAT
GTGGATTTTGTTATGTGAGAGATGGGGCATCCTACCGGGGAACAGTCTCT
GAGACAAAAACAGGCAAGACGTGTCAGCGCTGGGACAGTCAGACGCCACA
TGGACACAAGTATACACCCGCTGATTACCCGTCCTCCGGACTGGAGCAGA
ACTACTGCCGGAACCCGGACGGCCATACTGGCCTTTGGTGCTACACCACG
GATCCCAGCACGAGATGGGAGGACTGCGACGTACCAGTATGTGGTAGCAG
CGACGTTCCCACCGAAGCTCCTAAATGTGAAGACAAGCTAATGGACTGTC
ACGACTTGAAAGGCCACTGCAGCATCGAGTGGGTGAAGGAGAGCTGCCCC
AGAACGTGCGGCAAGTGCGGCGGTACCCCCACTGCATCTCCCACTGCTTC
TCCCACCGCATCTCCTACTGCATCTCCCAGCGCATCTCCCAGCGCATCTT
CCTCCGCATCTTCCTCCGCATCTCACACTGCATCTCCTACTGCATCTCCT
ACTGCATCTCCCACCGCATCTCCCTCCGCATCCCCCTCCGCATCTCCCTC
CACATCTCCCACTGGAGCTCCCACTGTAGCTCCCAGCTGTGAGGACAAGG
CCGACTACTGCCCCAGCGCGATAAGCTACTGTAGTAACAGCCTTTACACG
GCGTACATGGAGGAGTACTGCCCGAAAACGTGCGGCATGTGTGGCGGTGT
GTCTCCCACTGAAGCTCCAGGCTGTGAGGACCTGGCCACTAACTGTCACA
GCCTTAAAAACTACTGCAGTACCGAACCGGTAATGAAGGAGTACTGCAGC
AAAACGTGCGGCATGTGTGGTGGTACAGCTTCCAACGCAGATCCCAATGC
AGCTCACAACGCAAAGGCTCCGTGTGAGGACATGCACCCGAAATGTCCCC
AACGGAAAGGCCACTGCGGTAAGCGGCGCATCAAGAAGTACTGCCCCATG
ACCTGCGGCACGTGTGGCGTAGGCGGCGTAGTCCTCGCTGCAGGACCTAA
CGCAGCTCGGTGCGAGGACAAGCTCCCGATGTGTCCCCAACGGAAAGGCC
ACTGCGGCAAGCGGCGCATGAGGAAGCTCTGCCCCAAGACTTGCGGCAAG
TGTGCACGTGCCATCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000031 | genome | Sc0000031:1032969..1036583 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78368_cuf0 |
| Biotype | protein_coding |
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