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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78295_cuf0 >transcript:BL78295_cuf0-protein ID=transcript:BL78295_cuf0-protein|Name=transcript:BL78295_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=678bp
DETTEDGRKNVGLSTKDNNLPSLTRRLPSFLLSNARSLLNKLEDLSVSLN
DNKVDIAIISETWFSYEHPPECTHVNGFNLFSRCRTEGRGGGVAIYVKDS
IPTEIINFIEVPIELECLWVLVKPFWLPRSISNIAICAVYNPPASSYQEM
LCKHIIDSIDMVNTRYPNAGICVLGDFNRCDISNIVHGTQLNQLVTQPTR
GEAILDLIITNLKPFYQDPRIEEPLAMSDHNTVIWSPHDHIPINTKTRSQ
FRPFKDSEVRSFGQWISSHPWTDVFDAHDIQSKVNTFYQTLQRRIDLHFP
MKSVVKHNSDKEWVTPQIKSLIKRRQQAFHSRNMILYRKLRNRVNRLCTK
ARKRHYVHKIHVLKKENPARWHMSIRNILNVRRNVSVSVPSSSPLTDKEI
AAAINRHFSDIVNQLPCLDFESLPSYLPSPSKPPHIHSYESCGPDNISPK
IVKTFAVELSDILAHLFNCSLEEGRVPKQWKEAVISPIPKKSPASVENLR
PISLTSVFIKTFESFITKWVLQDIDKVLDPNQYGSRKGRSSVHYLINLID
SILRDAETPKTVQSVLLTDFSKAYDRIDHTLLIRKLLTCGVRTSILPWIC
SFLNDRTQCVRYRGVTSFWEKIASGVPQGTKLGPVLFLVYVNDAMQFFLN
RWKYVDDLTVKESRLFSEQSSMQXQCKM Run BLAST on NCBI mRNA from alignment at Sc0000950:11343..14353+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78295_cuf0 ID=transcript:BL78295_cuf0|Name=transcript:BL78295_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3011bp|location=Sequence derived from alignment at Sc0000950:11343..14353+ (Branchiostoma lanceolatum)
GACGAGACTACTGAGGATGGCCGAAAGAATGTGGGACTAAGTACTAAGGA
CAACAATTTACCATCTTTGACTAGAAGGCTGCCATCTTTCTTGCTTAGTA
ATGCTCGATCCCTTTTAAATAAGTTAGAAGACCTTTCTGTTTCTTTGAAT
GACAATAAGGTAGATATTGCCATCATTTCTGAAACCTGGTTTTCTTATGA
GCATCCTCCAGAATGTACACATGTGAATGGCTTTAACCTATTTTCTCGAT
GTCGTACCGAAGGCCGCGGTGGAGGAGTTGCTATATATGTTAAAGATTCC
ATACCTACAGAAATCATAAATTTTATTGAAGTACCCATAGAACTTGAGTG
TCTGTGGGTACTGGTCAAGCCCTTTTGGCTGCCACGCTCAATTTCTAATA
TTGCTATTTGTGCAGTTTATAACCCTCCAGCGTCTTCGTACCAGGAAATG
TTATGTAAACACATCATAGACAGCATTGATATGGTTAATACTAGATACCC
TAATGCGGGAATATGTGTTTTGGGGGATTTTAATAGATGTGATATCAGTA
ATATTGTCCATGGAACCCAGCTAAATCAGCTTGTAACACAGCCCACCAGG
GGAGAAGCCATTCTTGATCTGATTATTACAAATTTAAAGCCCTTTTATCA
GGATCCTCGAATCGAGGAACCTTTGGCAATGAGTGATCATAATACGGTAA
TATGGTCTCCCCATGATCATATACCTATTAATACTAAAACTAGATCACAA
TTTCGCCCTTTTAAAGATTCCGAGGTCCGCTCTTTCGGACAATGGATTTC
GTCACACCCGTGGACAGATGTTTTTGATGCCCACGATATCCAGAGTAAAG
TTAATACTTTCTATCAAACTCTTCAAAGGAGAATAGACCTCCATTTTCCT
ATGAAATCTGTTGTTAAGCACAATTCAGACAAAGAATGGGTTACCCCTCA
AATTAAATCTCTTATCAAGAGAAGACAACAAGCTTTTCATTCCCGTAATA
TGATATTATATAGAAAGCTAAGGAACCGTGTGAACCGATTGTGTACGAAG
GCAAGGAAAAGACATTATGTTCATAAGATACATGTTTTAAAGAAGGAGAA
TCCAGCAAGATGGCACATGTCTATACGAAACATTCTTAATGTCCGCCGTA
ATGTATCAGTGTCTGTTCCCAGCAGTTCACCTCTAACTGACAAAGAGATC
GCTGCTGCGATCAATCGCCACTTTTCAGACATTGTGAACCAACTTCCATG
TCTTGATTTCGAATCGTTGCCGTCTTACCTGCCTTCTCCTTCAAAACCGC
CGCATATTCATTCGTATGAAAGTTGTGGTCCGGATAACATTTCCCCCAAA
ATCGTCAAAACGTTTGCTGTTGAATTAAGTGACATTCTTGCCCATCTTTT
CAATTGCTCTTTGGAGGAGGGGCGTGTCCCCAAACAATGGAAGGAGGCTG
TTATTTCTCCAATTCCAAAGAAAAGCCCAGCATCAGTAGAAAATCTACGA
CCTATATCACTTACGTCTGTCTTTATAAAAACGTTCGAATCCTTTATTAC
TAAATGGGTTCTTCAAGACATAGACAAAGTTTTGGACCCCAACCAATATG
GCAGCAGAAAGGGGCGCTCATCAGTTCACTACTTGATAAATTTGATCGAC
TCTATTCTTCGTGACGCTGAAACCCCCAAAACTGTTCAGAGTGTTCTGTT
AACTGATTTTAGCAAGGCGTACGATAGAATCGATCATACTCTACTAATCC
GTAAACTGTTGACTTGTGGTGTACGCACTTCAATCTTACCATGGATTTGT
AGTTTTCTTAATGACCGTACACAGTGTGTTCGGTACCGAGGTGTAACATC
GTTTTGGGAGAAAATTGCATCAGGAGTTCCACAAGGTACAAAATTAGGGC
CTGTCCTCTTTTTAGTATATGTAAATGATGCGATGCAATTTTTTCTTAAC
AGATGGAAGTATGTAGATGATCTAACGGTAAAAGAAAGTAGACTTTTCAG
TGAACAATCTTCTATGCAGNTGCAATGTAAGATGTAAGATGCGATGCAAT
TTTTGTCTTAACAGATGGAAGTATGTAGATGATCTAACGGTAAAAGAAAG
TAGACTTTTCAGTGAACAATCTTCTATGCAGACAGCAATTAACCAACTGG
ACACATGGTCATCACAAAATTGTATGTCATTGAATGAAGATAAGTGTAAA
TTAATTTGTATCTCTTTCATGAAGGATCCTACCCCTTCCCCTGTAATGTT
ACTGAATGGCAAAGCCATTCAGTACACTGAGGATGCCTGTATTTTGGGTG
TTTGGATTTCTGCCGACATGAAATGGGGAAAACATGTCACAACAATCATA
AAAAAAGCAAGCTCGCGCCTTTTCTGGCTTAAAAAGCTAAAACGCTCTGG
TGTCTGCACTGAAGATCTTTGCGAAATTTATTTACTATATGTCCGACCAG
TCATAGAATATGCAGTCCCAGTATGGCACGCAGGTCTAACCACTCTACAA
TCCCACCAACTTGAACGCATTCAAAAACGTGCCCTCAGAATCATACTTGG
CAATAATTATACTTCCTATGCTGACGCACTTTCAACTTTTAACCTCTGCA
CTTTAAAAGCAAGAAGGGAATCACTCTGTCTTAAGTTTGCAAAATCTCTG
ATGAATTCACCAACGTTTCGACCCTGGCTACCCCCCACCCGCAATAAAGT
TCACAATATGGACTTAAAAGGGGGTTTCCAGCTTAGCATACCCTTTATAA
GATCTGACAGGTACAGGAACAGTGCCATTCCGTACTTGTCAAAACTCCTG
AACAGCGTATTGTAACTTATACCTATTGTGTAATCACCCTACTACCGTTT
CTACATATCCTTGTTGTTCAGTTTTGGTTAGGTTTGTAAATATTGATGAT
ATTTTGTACAGTTGTGTATTCCCTGAAACTGCGTAATTCAGCCTTTTTAC
TTTGTATCATTAGGCTGCAATGTTGTTTTAGCTCTGTATGAATTTGCGAA
TAAAACCATTT Coding sequence (CDS) from alignment at Sc0000950:11343..14353+ >transcript:BL78295_cuf0 ID=transcript:BL78295_cuf0|Name=transcript:BL78295_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2037bp|location=Sequence derived from alignment at Sc0000950:11343..14353+ (Branchiostoma lanceolatum)
GACGAGACTACTGAGGATGGCCGAAAGAATGTGGGACTAAGTACTAAGGA
CAACAATTTACCATCTTTGACTAGAAGGCTGCCATCTTTCTTGCTTAGTA
ATGCTCGATCCCTTTTAAATAAGTTAGAAGACCTTTCTGTTTCTTTGAAT
GACAATAAGGTAGATATTGCCATCATTTCTGAAACCTGGTTTTCTTATGA
GCATCCTCCAGAATGTACACATGTGAATGGCTTTAACCTATTTTCTCGAT
GTCGTACCGAAGGCCGCGGTGGAGGAGTTGCTATATATGTTAAAGATTCC
ATACCTACAGAAATCATAAATTTTATTGAAGTACCCATAGAACTTGAGTG
TCTGTGGGTACTGGTCAAGCCCTTTTGGCTGCCACGCTCAATTTCTAATA
TTGCTATTTGTGCAGTTTATAACCCTCCAGCGTCTTCGTACCAGGAAATG
TTATGTAAACACATCATAGACAGCATTGATATGGTTAATACTAGATACCC
TAATGCGGGAATATGTGTTTTGGGGGATTTTAATAGATGTGATATCAGTA
ATATTGTCCATGGAACCCAGCTAAATCAGCTTGTAACACAGCCCACCAGG
GGAGAAGCCATTCTTGATCTGATTATTACAAATTTAAAGCCCTTTTATCA
GGATCCTCGAATCGAGGAACCTTTGGCAATGAGTGATCATAATACGGTAA
TATGGTCTCCCCATGATCATATACCTATTAATACTAAAACTAGATCACAA
TTTCGCCCTTTTAAAGATTCCGAGGTCCGCTCTTTCGGACAATGGATTTC
GTCACACCCGTGGACAGATGTTTTTGATGCCCACGATATCCAGAGTAAAG
TTAATACTTTCTATCAAACTCTTCAAAGGAGAATAGACCTCCATTTTCCT
ATGAAATCTGTTGTTAAGCACAATTCAGACAAAGAATGGGTTACCCCTCA
AATTAAATCTCTTATCAAGAGAAGACAACAAGCTTTTCATTCCCGTAATA
TGATATTATATAGAAAGCTAAGGAACCGTGTGAACCGATTGTGTACGAAG
GCAAGGAAAAGACATTATGTTCATAAGATACATGTTTTAAAGAAGGAGAA
TCCAGCAAGATGGCACATGTCTATACGAAACATTCTTAATGTCCGCCGTA
ATGTATCAGTGTCTGTTCCCAGCAGTTCACCTCTAACTGACAAAGAGATC
GCTGCTGCGATCAATCGCCACTTTTCAGACATTGTGAACCAACTTCCATG
TCTTGATTTCGAATCGTTGCCGTCTTACCTGCCTTCTCCTTCAAAACCGC
CGCATATTCATTCGTATGAAAGTTGTGGTCCGGATAACATTTCCCCCAAA
ATCGTCAAAACGTTTGCTGTTGAATTAAGTGACATTCTTGCCCATCTTTT
CAATTGCTCTTTGGAGGAGGGGCGTGTCCCCAAACAATGGAAGGAGGCTG
TTATTTCTCCAATTCCAAAGAAAAGCCCAGCATCAGTAGAAAATCTACGA
CCTATATCACTTACGTCTGTCTTTATAAAAACGTTCGAATCCTTTATTAC
TAAATGGGTTCTTCAAGACATAGACAAAGTTTTGGACCCCAACCAATATG
GCAGCAGAAAGGGGCGCTCATCAGTTCACTACTTGATAAATTTGATCGAC
TCTATTCTTCGTGACGCTGAAACCCCCAAAACTGTTCAGAGTGTTCTGTT
AACTGATTTTAGCAAGGCGTACGATAGAATCGATCATACTCTACTAATCC
GTAAACTGTTGACTTGTGGTGTACGCACTTCAATCTTACCATGGATTTGT
AGTTTTCTTAATGACCGTACACAGTGTGTTCGGTACCGAGGTGTAACATC
GTTTTGGGAGAAAATTGCATCAGGAGTTCCACAAGGTACAAAATTAGGGC
CTGTCCTCTTTTTAGTATATGTAAATGATGCGATGCAATTTTTTCTTAAC
AGATGGAAGTATGTAGATGATCTAACGGTAAAAGAAAGTAGACTTTTCAG
TGAACAATCTTCTATGCAGNTGCAATGTAAGATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000950 | genome | Sc0000950:11343..14353 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78295_cuf0 |
| Biotype | protein_coding |
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