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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78248_cuf0 >transcript:BL78248_cuf0-protein ID=transcript:BL78248_cuf0-protein|Name=transcript:BL78248_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=131bp
MMMMMMLMIMMMMMMMLMLMLMMAAMIIIVRLSNIAVGQLYFTDVTDVFI
LATGNVSADGVYDDIRTPNRAASQRSETGSDVYAYPMAPFPAPPLPTQDS
GHYQELRPTVYQSLQKHQGASAPQPQNTTAT Run BLAST on NCBI mRNA from alignment at Sc0000825:22764..27567+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78248_cuf0 ID=transcript:BL78248_cuf0|Name=transcript:BL78248_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4804bp|location=Sequence derived from alignment at Sc0000825:22764..27567+ (Branchiostoma lanceolatum)
GGAAATGTCAAGGCTAATTTACTTATATACTGTCTGTGTCGAATGAAGTC
TAGCCACGTTCTGGGTACATGCGTATTTAATTGTTTAGGTTTCTTCTAGA
ATGATCTAAAGTATACAATAAACGTGTCCATGTGCACAACACTTTTTCCC
GTCTGAAAATAACGCTTTATGCGAAACTTTTTTGTTATTTGTGATCACAA
ACAGACAAAAAGCTAAAACGATGATCCGAAACAATGATCTTGCACAGCAA
AGTTTTTTTGTCGTCAAGACGACACCTTACCAATGACAAATGTCGTGGCA
ATTTTTTTTTCAACATTGCTAGGGGCGTTTTTGATTCATGAACAAAAATG
GTCAAAAGCAGAAGATATATATTGACTTATAACGAAACCTTTTCTATTTT
AGTGAATTCTGAACACAACAATACCTGTCCTTTATGCCGTGCTGAACACC
TGTCAAATACACAGGTACACCTGTTCGCGGAGTTAAAGTAATTTTTTTCA
GTTTCTGTGACTGGCAATTTCTCATCTTTCAGTAATATCTACTGACATAA
TTCCACCAGATTACCTAATATCGCCACCCTGAAAAGATACGTCCAAACAT
ATTTCTAACACTGTTCACTCCGTACAAGATGATTTCTCGGTCGGCGGTAA
CAAGGACGCCCTTGGTAGCTCGCTCTTGTCCACTGAGCATGAGAGAGCGG
GGCAGGGTGAGCACATGGGCAGCTGTATTAGTCACAACCAGCTGCTTGGT
GTAGCCGGCACCTGGAGCAGAGATGGTGACGTTGGCAGGCTCTGTGCTTG
CGCTGATAATGATGAGCTGGAGATTAACCAATTTAAAGCCATCCAAGAAG
CCGACCACAAAACTTGTTCCTTTGTTGTCTAGAGATGCCAGCCCTGGTAA
TAAGCACACATTTTAGAATTCTTCGACGCTTCTCTCTTCTGATCGCCATC
TAGGAACCAATATGAGCGATGGGTAGGTAAATCTTTTAAACCTCACCAGG
GAATTATTGGATGTCTAACTTGCACGAAAAAGCAACAATTAACGTTACGA
CTCGAACTTTTCTATCATATTTTTTTCTAATACACTTATGATCTTCAGCG
ATAGTGATGTAGTTGCTAGGTTTATTTAAAGCTTATCGAGTATTCATAGA
TTACCCTGACTATATTAAGCAGACCCCCCCACACATATTCACTTATCCAG
TTGCCGTGATTATTAAATTCGCAAATCACAATTGTGATGAGATTTCCTTT
TTTTTTTTTTAATGGATTCCCGTGCTTGAGGAAGTGCCTCGGGCATACAG
GTAGGTCAGCAACCCCTACCTGTAAAAATATACTCTATACTAAACCATAC
TTGCTACTGAAACAGCAAGGAAACTTGCTGACCTATGTGCAACGAGGCAC
TACAAGGTGAAAAATATCAACCTAAGACTTGATTGGTCATCATAGTTCTC
AGTAGAATATATCTTTGCCACCTACATGTAGGAATCTACAGACTAAGATT
CGATGCCTTACACATCACTGCACACCAATGGAGGATTTTCCAATGGTGAC
AAATTCAAGGTAACTCTGGGACTGAATCGCGACTTACAGTCACAGTAGAC
GGCACAAACATGATGTATCGATACAAGGACATCCACGACTATATGCGGAC
TAGGCAACGTACGTTAGAGTGTAGTGAACTAATGTTAAACTTACCCAAAC
TCAAATTAGCGACCAAGATGGTGCCAACTAGCCCCAAGGCCAAGCCAAAC
CTCATAATGCACGTTTCCTTTGTCTTCCCAAAAGTAGTTGAAATCCTTGA
TGCGTCCGACTTGAAAAAAGGGGAGTCTCGCCAGAAAGAATCTGTGTGCA
CTCTCACAACGACAGACTGTATTCTTCAGGAAAGGTACGAATGTGTCGTT
CCACTTCCAGCTTTCTTGTTAGACAAGTCTGACTTGCTAAGATCATGACG
TCAAAATGCCAGAGGCGTTTCCAGGTCATGTACGATGTATTTGCGGGCAT
GTGGGGAGGGTATTTTGAAATATTTGAGTCCTACCGGGTCGAACTTCTAC
CAGGACACGGTGACGTTCACCTGTAACCCGGGAGACGTACAGAACGGCGT
TGACGCTGCGACGTGCCAAGCTTACGGAACATGGAGAAAAATCCTGTTCC
AGCATGCAGAGGTGAGATGACGTTGCAATTGATGTATGCTTTGCAAAATC
CAACGGAACATAGTAGCTGGTGGGGAGAATATCAAAGGTTGAATATTTGA
AAGTTCTTATACACACCCCAAACGCCTTTTGTATATGGATCATACAAGAT
CTGCAAAACTTTTTTCGTGAGTCGCTGTACCAGGTTCCGAACCAGATGCC
GTGTTTAATATGACGTCACGGTAGAAAATTGATATGATTAACTGACGTCA
GGAATCAAGAGCTGCATAATTTGCAATACAAATGTATTCGATGTTCAATC
ACATCAGAAGGGTGTATGTTTTGTATAAACGGTCATTGAATAATACTTGC
TGGTATGGAATGCTGGTTGCTTGTAATCAGGAGATGTTGTGTCTTAGTGA
CATATATACTTAAATGACTTAAAATGAATATCTATAGCGCACTGCTGATT
GCAAATGAATATATACGTAGTATAGTCTGTTTAGTGAAAAGGAATTTGTT
CGGTATCATATTAAGTTACTTTGGTCGCATACTTCACTTTACAGACAAAA
CTCCTTTTGGAATCGAGATTGTCTTGGGTGCCGCAGTCGGCTGTTCTGTC
GCCGGACTGCTGCTAGGGGTCGCTGTGACACTCCTGATTTTACTCTACCG
GTCGGCGAAGAACGATAAAAATGACACAGATACTTTACTATCAAAAAAAT
GTAACTTTCAAAAGTTTACAAATGTATTTTGGAAATTCAAACTATTGTTT
TATTTACTTTTGAAATGTCAGACCATCTTGGTATAGAGCTATGAGTATGA
AATAGTATGATGATGATGATTGTGCGACTTTCGAATCCATCTGTTGGACA
ACTATGAGTATGAGATATGATGATGATGATGATGTTGATGATTATGATGA
TGATGATGATGATGCTCATGCTGATGTTGATGATGGCGGCGATGATCATT
ATTGTGCGACTTTCGAATATAGCTGTTGGACAGCTATACTTTACAGATGT
AACGGATGTATTCATTCTTGCAACTGGCAATGTTTCAGCTGATGGAGTCT
ACGATGACATCCGGACACCCAACAGGGCGGCGTCCCAGCGATCCGAAACT
GGAAGTGACGTTTATGCTTATCCCATGGCACCCTTTCCCGCGCCTCCCCT
CCCCACTCAGGATAGTGGGCATTACCAGGAGCTGAGGCCAACGGTGTACC
AGAGTCTGCAAAAGCACCAGGGCGCATCAGCGCCCCAACCTCAGAACACT
ACAGCAACATAATTGTATTAGTTGTATTCTCATCTTTTTTCAAAGTAGTC
AAGGCAGACGAAAAATGGAGGTTATTCTTTAGGCGGCGTCAGTTTGTGCA
TGTTGGTGAACAAGAGAGCTCAAGCTAAGAGCGGCTGGATGCAGAGGTTT
TGTATCTAACGTGTTAGTTGCCTGTGACAAAAAGTGAAATAGAATTTGGC
CCTTGTAAGCTTTCCTAGCCATTGAAGCGAAAGTTCCCGTTTTGGACAAG
TTCACGATTTTTTGGACGGTGAAAAGCTCTTGTGCTCGGAGAGAAATGAC
TTAGTTTGAGCCTTTTAGCATCTTATTATTGAACTGTAGGAGCGTTTTTG
TTAAAATCTTTCAAAGAGCATAGATAAAGAAAGAAACAACGTTAACGGAT
TTCATGGTATAGGGTGTGTAGGTAGCATACCCCCAGGATCGAAGGATGAT
GAAGATAAAGTAGCTGAGATACAGATAAATAGATAATGAGGAAATTGTAT
CATAGCAAGGTTTTCAATGCATCTTTTGTCCTGGATACCCTAGGGTCTGG
ATTTTTGGGTTGCAGGTATATTGGTAGCTTCTGAGGTCAGGGTAGAACGG
TATAGGTTTGGGCCCACAAGTAGTTAATTGTTTAGCTGCAGGGTCGTTTT
TTTTTAATTCAAAGAGGATAACTGAAGAAGGGATGAACGTATTTCCTTCT
TTTGGACATGCAGAGAGCTTAGACATAGACACACTATCAGATACTAGTTC
GTAATGCAAATGAGGACTGTATACGTATGTACATAATTATCTAGGAAATT
CTATATTTCCAGTGGTGCTTTTTACAATATGACTTCCTGCACCTCCAATA
TGACATTCGCAGCATTTATCGTAGGGAAATAAAACAGGTTTCTACTTTAA
TAGAGCTACCACCCTACATCTTTACTTGTCAAGGGAAAATGTTGCCTAGC
AACGGTTGCCATGTAGGTAAAATCTATATTAGAAATATTGCTTTTATTAC
ATGCAAAGTTCATGAAAAGATTCATGCACTTATTCTTATTTTTTTGCACC
AATCACCTTGACTATTACAATATATTAGAATGGGGCCAGGCTTGAAGTGC
TCCCAATGACCTTTGACCTTTGAAACTGGTGTATAGAAGTAAAAGACATT
TGATCAAGCTTAATTTGGGCATTTATATTTGCGACCCATTCACATAGTCA
TGGTATCTCATAAATGTATCATTATCGGAGAGGTGATCATCAAAGACGGC
GGACATGCTATATCCTTTCAAAATACCCGGGAACAGCACACAATTTCTTT
CGGGAATAAGTCTGCCAGGAATCCCCAATGAAGTCCAGAATGTGAACATC
TACATTCCGGAGACATCCAACCTCTGGTCTACCGTTGTAGACTTGATATA
AACC Coding sequence (CDS) from alignment at Sc0000825:22764..27567+ >transcript:BL78248_cuf0 ID=transcript:BL78248_cuf0|Name=transcript:BL78248_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=396bp|location=Sequence derived from alignment at Sc0000825:22764..27567+ (Branchiostoma lanceolatum)
ATGATGATGATGATGATGTTGATGATTATGATGATGATGATGATGATGCT
CATGCTGATGTTGATGATGGCGGCGATGATCATTATTGTGCGACTTTCGA
ATATAGCTGTTGGACAGCTATACTTTACAGATGTAACGGATGTATTCATT
CTTGCAACTGGCAATGTTTCAGCTGATGGAGTCTACGATGACATCCGGAC
ACCCAACAGGGCGGCGTCCCAGCGATCCGAAACTGGAAGTGACGTTTATG
CTTATCCCATGGCACCCTTTCCCGCGCCTCCCCTCCCCACTCAGGATAGT
GGGCATTACCAGGAGCTGAGGCCAACGGTGTACCAGAGTCTGCAAAAGCA
CCAGGGCGCATCAGCGCCCCAACCTCAGAACACTACAGCAACATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000825 | genome | Sc0000825:22764..27567 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78248_cuf0 |
| Biotype | protein_coding |
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