transcript:BL77824_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL77824_cuf0
Unique Nametranscript:BL77824_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL77824_cuf0

>transcript:BL77824_cuf0-protein ID=transcript:BL77824_cuf0-protein|Name=transcript:BL77824_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
LPMVDRTIRTVYTHLPQSVCCHACGKIVCHFSLKTRFSRLNRRKSSKKTR
KNVNKTRIFARAFQPLRRDLPRFAFISGRIRHNTYFFEYFSVKILRMYRR
Run BLAST on NCBI

mRNA from alignment at Sc0000001:3080279..3081059+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL77824_cuf0 ID=transcript:BL77824_cuf0|Name=transcript:BL77824_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=781bp|location=Sequence derived from alignment at Sc0000001:3080279..3081059+ (Branchiostoma lanceolatum)
CCTGCCTATGGTAGACCGCACAATAAGAACAGTATACACGCACCTCCCCC
AGTCAGTGTGCTGTCACGCTTGTGGCAAAATAGTTTGTCATTTCTCATTA
AAAACCCGTTTTTCAAGACTCAATCGAAGAAAGTCATCGAAGAAAACAAG
GAAAAACGTAAACAAAACAAGAATTTTCGCCCGTGCATTTCAGCCCCTAC
GTCGTGATTTGCCGCGGTTCGCCTTCATTTCTGGCCGTATTCGACACAAC
ACATATTTCTTTGAATATTTTTCCGTGAAAATTCTCCGTATGTACCGTAG
ATAAATCGTTATTTTCGCTAAGAATTCACATAAGTCACGACGCTCGCTCG
AGTCGCAACCCGCCCCGTCCAACAAGACGTAAACAAAACAAGAATTTTCG
CCCGTGCATTTCAGCCTCTACGTCGTGATTTGCCGCGGTTCGCCTTCATT
TCTGGCCGTATTCGACACAATATATATTCCTGTGAATATTTTTTCGTGAA
AATTCTCCGTATGTACCGTAGATAAATCGTTATTTTCGCTATGAATTCAC
ATAAGTCATGACGCTCGCTCGAGTCGCAACCCGTCCCGGGCCGTCCGCCA
TGTTTTTAAACTCATTGATATGCAAGGTTCTGAGCGCTGATTGGGCTGCG
TCATAAAGACTGTGCTCTGATTGGTTGACAGCAAGATGTGACGTGACCAC
ACGGGCGGGAATTTCCCTTTACACTTCGGGCGTTTCTTGTCAAAATAGAT
CGCATTTTGTGACGATTGAAGCAGTATTATA

Coding sequence (CDS) from alignment at Sc0000001:3080279..3081059+

>transcript:BL77824_cuf0 ID=transcript:BL77824_cuf0|Name=transcript:BL77824_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=303bp|location=Sequence derived from alignment at Sc0000001:3080279..3081059+ (Branchiostoma lanceolatum)
CTGCCTATGGTAGACCGCACAATAAGAACAGTATACACGCACCTCCCCCA
GTCAGTGTGCTGTCACGCTTGTGGCAAAATAGTTTGTCATTTCTCATTAA
AAACCCGTTTTTCAAGACTCAATCGAAGAAAGTCATCGAAGAAAACAAGG
AAAAACGTAAACAAAACAAGAATTTTCGCCCGTGCATTTCAGCCCCTACG
TCGTGATTTGCCGCGGTTCGCCTTCATTTCTGGCCGTATTCGACACAACA
CATATTTCTTTGAATATTTTTCCGTGAAAATTCTCCGTATGTACCGTAGA
TAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL77824gene:BL77824Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL77824_cuf0-E1BL77824_cuf0-E1-1564476830-23380Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL77824_cuf0transcript:BL77824_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:3080279..3081059 +
Properties
Property NameValue
Transcript idBL77824_cuf0
Biotypeprotein_coding