transcript:BL74474_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74474_cuf0
Unique Nametranscript:BL74474_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74474_cuf0

>transcript:BL74474_cuf0-protein ID=transcript:BL74474_cuf0-protein|Name=transcript:BL74474_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=126bp
QTSRMAEDLRVEQENSQHAEKVKRTMEANLKDLQRRLDEAEAIALKGGKR
AIQKQENRIRDLENDIATQSRAHQEDLKQLRKNERRLKEMSFQADEDRKN
QDRIQELVEKLQLKIKTFKRQVEEAV
Run BLAST on NCBI

mRNA from alignment at Sc0000233:87013..87633+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74474_cuf0 ID=transcript:BL74474_cuf0|Name=transcript:BL74474_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=621bp|location=Sequence derived from alignment at Sc0000233:87013..87633+ (Branchiostoma lanceolatum)
CAGACATCCCGCATGGCTGAGGATCTGCGTGTGGAGCAGGAGAACTCTCA
GCACGCCGAGAAGGTAAAGCGCACCATGGAGGCCAACCTGAAGGATCTGC
AGCGCCGCCTGGATGAGGCTGAGGCTATTGCACTCAAGGGAGGCAAGCGC
GCCATCCAGAAGCAGGAGAACAGGGTAAGTATGGAACCTTATTGAGATAC
GATCTTCAGAACGAGAGGTAGAAACATATTTTGTTTATCTCATGATCTTA
TCGTTTCAAAAATGACTTGTCCAATGCGAAGTTAAGAATCAGAAACAAAG
CCATCTGACCAATTTTTTTCACGCAAGGTGATGCAGAATTACGTGCACAG
CACAGCATAGTTCATACTTTCAATCTCATTTCAACTGTATTTTGCGATTT
GGTTTCATCCAATAGATCCGCGATCTGGAGAATGACATTGCCACGCAGAG
CCGTGCTCACCAGGAGGACCTGAAGCAGCTGCGTAAGAACGAGCGCCGCC
TCAAGGAGATGAGCTTCCAGGCCGACGAGGACCGCAAGAACCAGGATCGC
ATCCAGGAGCTGGTCGAGAAGCTGCAGCTGAAGATCAAGACCTTCAAGCG
CCAGGTGGAGGAGGCTGTAAG

Coding sequence (CDS) from alignment at Sc0000233:87013..87633+

>transcript:BL74474_cuf0 ID=transcript:BL74474_cuf0|Name=transcript:BL74474_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=756bp|location=Sequence derived from alignment at Sc0000233:87013..87633+ (Branchiostoma lanceolatum)
CAGACATCCCGCATGGCTGAGGATCTGCGTGTGGAGCAGGAGAACTCTCA
GCACGCCGAGAAGGTAAAGCGCACCATGGAGGCCAACCTGAAGGATCTGC
AGCGCCGCCTGGATGAGGCTGAGGCTATTGCACTCAAGGGAGGCAAGCGC
GCCATCCAGAAGCAGGAGAACAGGATCCGCGATCTGGAGAATGACATTGC
CACGCAGAGCCGTGCTCACCAGGAGGACCTGAAGCAGCTGCGTAAGAACG
AGCGCCGCCTCAAGGAGATGAGCTTCCAGGCCGACGAGGACCGCAAGAAC
CAGGATCGCATCCAGGAGCTGGTCGAGAAGCTGCAGCTGAAGATCAAGAC
CTTCAAGCGCCAGGTGGAGGAGGCTGTACAGACATCCCGCATGGCTGAGG
ATCTGCGTGTGGAGCAGGAGAACTCTCAGCACGCCGAGAAGGTAAAGCGC
ACCATGGAGGCCAACCTGAAGGATCTGCAGCGCCGCCTGGATGAGGCTGA
GGCTATTGCACTCAAGGGAGGCAAGCGCGCCATCCAGAAGCAGGAGAACA
GGATCCGCGATCTGGAGAATGACATTGCCACGCAGAGCCGTGCTCACCAG
GAGGACCTGAAGCAGCTGCGTAAGAACGAGCGCCGCCTCAAGGAGATGAG
CTTCCAGGCCGACGAGGACCGCAAGAACCAGGATCGCATCCAGGAGCTGG
TCGAGAAGCTGCAGCTGAAGATCAAGACCTTCAAGCGCCAGGTGGAGGAG
GCTGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74474gene:BL74474Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74474_cuf0-E1BL74474_cuf0-E1-1564476830-400841Branchiostoma lanceolatumexon
BL74474_cuf0-E2BL74474_cuf0-E2-1564476830-400844Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74474_cuf0transcript:BL74474_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000233genomeSc0000233:87013..87633 +
Properties
Property NameValue
Transcript idBL74474_cuf0
Biotypeprotein_coding