transcript:BL74473_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74473_cuf0
Unique Nametranscript:BL74473_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74473_cuf0

>transcript:BL74473_cuf0-protein ID=transcript:BL74473_cuf0-protein|Name=transcript:BL74473_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=110bp
LQVSIDDEQRQRDEIREQYNMSERKCQMLVAEGDEVRGALDNAERARKAA
ESQLVETNERLGELSTQNSALSGHKRKLDGDLSQVQSELEEVIGDHKSTE
ERAKKAMADV
Run BLAST on NCBI

mRNA from alignment at Sc0000233:86372..86837+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74473_cuf0 ID=transcript:BL74473_cuf0|Name=transcript:BL74473_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=466bp|location=Sequence derived from alignment at Sc0000233:86372..86837+ (Branchiostoma lanceolatum)
CCTACAGGTTAGCATCGACGACGAACAGCGGCAGCGTGATGAGATCCGTG
AGCAGTACAACATGTCTGAGCGTAAGTGCCAGATGCTGGTGGCCGAAGGT
GATGAGGTAGGTACTTGGGTCTTGCCTTAAAGGGAATAAATGAGTTCAAA
GTCATGTACTTCACAACAGTGGTGTTTTATTACGCTTTTCTGGTCCATCT
CAAATCTTTTAACGGCAACTAATAAATGTATATATTCCAAGGTACGAGGC
GCACTGGACAATGCAGAGAGAGCTCGTAAGGCCGCTGAATCTCAGCTTGT
GGAGACCAACGAGAGGCTTGGTGAGCTGAGCACACAAAACTCAGCCCTGT
CCGGACACAAGCGCAAGCTGGACGGCGACCTGTCGCAGGTCCAGTCCGAG
CTGGAAGAGGTCATCGGTGATCACAAGAGCACCGAGGAACGGGCCAAGAA
GGCCATGGCTGATGTA

Coding sequence (CDS) from alignment at Sc0000233:86372..86837+

>transcript:BL74473_cuf0 ID=transcript:BL74473_cuf0|Name=transcript:BL74473_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=660bp|location=Sequence derived from alignment at Sc0000233:86372..86837+ (Branchiostoma lanceolatum)
CTACAGGTTAGCATCGACGACGAACAGCGGCAGCGTGATGAGATCCGTGA
GCAGTACAACATGTCTGAGCGTAAGTGCCAGATGCTGGTGGCCGAAGGTG
ATGAGGTACGAGGCGCACTGGACAATGCAGAGAGAGCTCGTAAGGCCGCT
GAATCTCAGCTTGTGGAGACCAACGAGAGGCTTGGTGAGCTGAGCACACA
AAACTCAGCCCTGTCCGGACACAAGCGCAAGCTGGACGGCGACCTGTCGC
AGGTCCAGTCCGAGCTGGAAGAGGTCATCGGTGATCACAAGAGCACCGAG
GAACGGGCCAAGAAGGCCATGGCTGATGTACTACAGGTTAGCATCGACGA
CGAACAGCGGCAGCGTGATGAGATCCGTGAGCAGTACAACATGTCTGAGC
GTAAGTGCCAGATGCTGGTGGCCGAAGGTGATGAGGTACGAGGCGCACTG
GACAATGCAGAGAGAGCTCGTAAGGCCGCTGAATCTCAGCTTGTGGAGAC
CAACGAGAGGCTTGGTGAGCTGAGCACACAAAACTCAGCCCTGTCCGGAC
ACAAGCGCAAGCTGGACGGCGACCTGTCGCAGGTCCAGTCCGAGCTGGAA
GAGGTCATCGGTGATCACAAGAGCACCGAGGAACGGGCCAAGAAGGCCAT
GGCTGATGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74473gene:BL74473Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74473_cuf0-E1BL74473_cuf0-E1-1564476830-400834Branchiostoma lanceolatumexon
BL74473_cuf0-E2BL74473_cuf0-E2-1564476830-400836Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74473_cuf0transcript:BL74473_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000233genomeSc0000233:86372..86837 +
Properties
Property NameValue
Transcript idBL74473_cuf0
Biotypeprotein_coding