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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL74394_cuf1 >transcript:BL74394_cuf1-protein ID=transcript:BL74394_cuf1-protein|Name=transcript:BL74394_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=362bp
SCVFDGKQGQDVTKTCTHLANQSLSLSSQCDFSVLNTSRTWFCEKPEVTA
CSKITKCRSARDIVDRLLTSDEERQLFDSPFFRTNLVPATNGSIIVSNIE
ENATLARSLPLCQPGLPHSESQGFWFRDSWHSLTCKVQQFSPQDITECLA
NRTLQFRGDSTCRQWIERLGALKIFKEGQGDKQSRLFFRHYDNNKSNIQA
TFKFHTVPIQASAWWRFQKLSDAGVSTEIERMVGGTNVVLVLSLCSHFTA
EPKHVYSSRMYEVRSAIQELHKKYPETTVIVKTCNTRHHQHYRESIQMSD
WLADQLNQGMRGILGDLNVAILDVWDMTVSQRYPPNIHPNVNVVDNELNI
LMSYICSGMKTP Run BLAST on NCBI mRNA from alignment at Sc0000369:144441..147377- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL74394_cuf1 ID=transcript:BL74394_cuf1|Name=transcript:BL74394_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2937bp|location=Sequence derived from alignment at Sc0000369:144441..147377- (Branchiostoma lanceolatum)
GGTCATGTGTCTTCGACGGGAAACAAGGTCAAGACGTCACAAAGACGTGT
ACGCATCTTGCAAACCAATCTCTCTCGTTATCAAGTCAGTGCGACTTCTC
GGTGTTGAACACGAGCCGAACTTGGTTCTGCGAAAAACCGGAGGTGACAG
CCTGTAGCAAAATCACAAAGTGCAGATCCGCTCGGGATATTGTGGATAGA
CTACTGACTTCTGATGAAGAGCGCCAACTTTTCGACAGGTATTTATCATA
ATAACGGAGATGTTGATATAAGGTATATCATTCCCCTCATAGCAGAGCAG
ATTCATTGTCTTACAACTCCATTCATTTACCTCTGCTCATGAAACGTAAT
CGTCATAAATGTCGAATTCAGATTGAAATAAAGTTGACATCGGTACAATG
GCTTAAGTATGGGGTTTGTCTTGCATACGGTAGGTCGTGAGTTCAATTTC
CGGTGCATTCATATCAAAGTATTTAATCAAACATGATAGTACATACTGCT
TTCTCTGCTTAGCATTATGAAAAGAGTATAGCAGTTACACAGGCACCACT
ACCAGTGGACTTGCCCTCTGTTGTAGTGAGACAAACCTCTATTTTCTACT
TAACGTAATGTTACTATCAGCTATGGCAGGTAAAAACCGTGACATAAAAA
AATAGCGATTTACTTAATTTGCCAAAAGTGTTACCTTTCTTTATGTCATT
AGTTATACTGAAAATATATTTGAATTAAACAGATGACTCAAATTTATGAG
TCATAATTCTTATGTTGCGGTTAAATTGAATAATTCTTTGTGATGTTGTG
TACCAAAACAAAAGAATTTCATGAAATCATTTTCATCTTTATGATAGCGA
TAGGCAATTGCATGTATGTGTATATCCAAATATATGTGTTCCAATGATAC
ACGTTTTATCGGTCTCCTCAGCCCTTTCTTTCGGACGAATTTAGTCCCTG
CCACGAATGGATCAATCATTGTCTCCAACATTGAAGGTGAGCCATTTTTT
TAGCTTGATAATCATGTGGAAGTTCGAATAAAGCTAACATAATCATTCTG
GTTACAACAACATAAAGTGTAACATTTCTGTTATAGCCTGAGGTGTAACA
TGTTTGTTATCAGTACTCTACAGGTAACATTTTTGTCATCAGTACTCTGA
ATTGTGCAACAACCTGCGTGCATTCGCCTTTTCTCCCAATTACGTTGTTA
CATAGGAACTATATATTGTGCTAGCGACCAAAATAGTGACCCATATCTCC
GGGACAATACTAGTACCTAGCCATAAACTCAAATGTAATGTTACCTAGGT
AAATTTCTTTCTCATATTTGTAGCTCCAATGTTGTCAAGATGTACTAGCT
ATCAAATTGATACCAATAGACTTTTTATGGTTTAAATACTTATAATACAT
AAACTGTATAAAATATCAAGTGCATTTTATAATTACCCTTATGAATAATT
ATGACTGAATCTTGATAGTGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATTCTTGATGATGATGA
TGATGATGATGATTCTTGATATAGATCGCAAGATAGAATTAAAAGCAGAT
ACTCTCATCGTTTTATGGATGTATAGCATTATAGACTTACTTGTTGTGAT
GGTGTGAATTACTATATATATAACGGAACGAAGTGAAGCAGTACCTATCT
TTCAACAGGGTCTAAAACTTGCAGCACAGGGACAAAACATCATGGTAAAA
AAGTCAGCAGGACAAGGGTTAATGATTTGTGTAGACGGAAACGAAACGTA
AATTTTCCCTTACCACTTGTGTGCTTAAACTGCGGGAATGTATCTTTTAT
CCGTCGACTCTATGAATTGCTCGCTTTCTCCCCTTATACAGTATACATTG
TAATTAAAGCGTTGCTTTGAACTATTCTAAAATGTGTCTTTTTTTTTCAA
CAGAAAATGCAACTTTGGCGAGATCGCTACCGCTTTGCCAGCCTGGATTG
CCGCATTCCGAATCTCAGGGGTTCTGGTTCCGTGACTCATGGCATTCACT
TACTTGTAAGGTTCAACAATTTAGCCCTCAGGACATTACTGAATGTTTAG
CGAACAGAACATTGCAGTTTAGAGGTGACTCTACATGTCGGCAATGGATT
GAACGCCTCGGAGCATTAAAGATTTTTAAGGAAGGACAAGGAGACAAACA
ATCTAGATTATTTTTTAGACACTACGATAACAACAAAAGTAACATTCAGG
CCACATTCAAGTTCCACACTGTCCCCATCCAAGCTTCGGCTTGGTGGAGG
TTTCAAAAATTGAGTGATGCCGGTGTTTCTACTGAGATCGAGAGAATGGT
CGGTGGTACAAATGTTGTGCTTGTGCTGAGTTTGTGCTCACACTTCACAG
CCGAACCAAAACATGTCTACAGTTCCCGCATGTACGAAGTAAGATCTGCG
ATACAAGAGCTTCACAAGAAGTATCCTGAAACCACAGTTATCGTGAAGAC
GTGCAACACACGGCACCATCAGCACTATAGGGAATCCATCCAGATGTCAG
ACTGGCTGGCAGACCAGTTGAACCAGGGAATGAGGGGCATTCTGGGAGAT
TTGAATGTCGCCATCTTGGACGTGTGGGATATGACCGTGAGCCAGCGGTA
TCCTCCAAACATACACCCAAATGTAAATGTAGTAGACAACGAATTGAACA
TCCTCATGTCTTACATATGCTCAGGGATGAAAACTCCTTAATATTCATTA
TAAACCTCCGTTTAGGAGTTAGGCGACATGAAATGTGGGGCGGGCCTCAA
AAGCCCCACTCGGTCTGAATAGGGTTTTAAAAAAATGGTATTTTGATGTG
ATGTATGCCAAAAGTGGGAATGGGGTTCCTTGAACATTTTTTCAATGTGG
TCTGGATTGATCAAGTTTTAAAAGGTCAGATTATCCC Coding sequence (CDS) from alignment at Sc0000369:144441..147377- >transcript:BL74394_cuf1 ID=transcript:BL74394_cuf1|Name=transcript:BL74394_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3267bp|location=Sequence derived from alignment at Sc0000369:144441..147377- (Branchiostoma lanceolatum)
TCATGTGTCTTCGACGGGAAACAAGGTCAAGACGTCACAAAGACGTGTAC
GCATCTTGCAAACCAATCTCTCTCGTTATCAAGTCAGTGCGACTTCTCGG
TGTTGAACACGAGCCGAACTTGGTTCTGCGAAAAACCGGAGGTGACAGCC
TGTAGCAAAATCACAAAGTGCAGATCCGCTCGGGATATTGTGGATAGACT
ACTGACTTCTGATGAAGAGCGCCAACTTTTCGACAGCCCTTTCTTTCGGA
CGAATTTAGTCCCTGCCACGAATGGATCAATCATTGTCTCCAACATTGAA
GAAAATGCAACTTTGGCGAGATCGCTACCGCTTTGCCAGCCTGGATTGCC
GCATTCCGAATCTCAGGGGTTCTGGTTCCGTGACTCATGGCATTCACTTA
CTTGTAAGGTTCAACAATTTAGCCCTCAGGACATTACTGAATGTTTAGCG
AACAGAACATTGCAGTTTAGAGGTGACTCTACATGTCGGCAATGGATTGA
ACGCCTCGGAGCATTAAAGATTTTTAAGGAAGGACAAGGAGACAAACAAT
CTAGATTATTTTTTAGACACTACGATAACAACAAAAGTAACATTCAGGCC
ACATTCAAGTTCCACACTGTCCCCATCCAAGCTTCGGCTTGGTGGAGGTT
TCAAAAATTGAGTGATGCCGGTGTTTCTACTGAGATCGAGAGAATGGTCG
GTGGTACAAATGTTGTGCTTGTGCTGAGTTTGTGCTCACACTTCACAGCC
GAACCAAAACATGTCTACAGTTCCCGCATGTACGAAGTAAGATCTGCGAT
ACAAGAGCTTCACAAGAAGTATCCTGAAACCACAGTTATCGTGAAGACGT
GCAACACACGGCACCATCAGCACTATAGGGAATCCATCCAGATGTCAGAC
TGGCTGGCAGACCAGTTGAACCAGGGAATGAGGGGCATTCTGGGAGATTT
GAATGTCGCCATCTTGGACGTGTGGGATATGACCGTGAGCCAGCGGTATC
CTCCAAACATACACCCAAATGTAAATGTAGTAGACAACGAATTGAACATC
CTCATGTCTTACATATGCTCAGGGATGAAAACTCCTTAATCATGTGTCTT
CGACGGGAAACAAGGTCAAGACGTCACAAAGACGTGTACGCATCTTGCAA
ACCAATCTCTCTCGTTATCAAGTCAGTGCGACTTCTCGGTGTTGAACACG
AGCCGAACTTGGTTCTGCGAAAAACCGGAGGTGACAGCCTGTAGCAAAAT
CACAAAGTGCAGATCCGCTCGGGATATTGTGGATAGACTACTGACTTCTG
ATGAAGAGCGCCAACTTTTCGACAGCCCTTTCTTTCGGACGAATTTAGTC
CCTGCCACGAATGGATCAATCATTGTCTCCAACATTGAAGAAAATGCAAC
TTTGGCGAGATCGCTACCGCTTTGCCAGCCTGGATTGCCGCATTCCGAAT
CTCAGGGGTTCTGGTTCCGTGACTCATGGCATTCACTTACTTGTAAGGTT
CAACAATTTAGCCCTCAGGACATTACTGAATGTTTAGCGAACAGAACATT
GCAGTTTAGAGGTGACTCTACATGTCGGCAATGGATTGAACGCCTCGGAG
CATTAAAGATTTTTAAGGAAGGACAAGGAGACAAACAATCTAGATTATTT
TTTAGACACTACGATAACAACAAAAGTAACATTCAGGCCACATTCAAGTT
CCACACTGTCCCCATCCAAGCTTCGGCTTGGTGGAGGTTTCAAAAATTGA
GTGATGCCGGTGTTTCTACTGAGATCGAGAGAATGGTCGGTGGTACAAAT
GTTGTGCTTGTGCTGAGTTTGTGCTCACACTTCACAGCCGAACCAAAACA
TGTCTACAGTTCCCGCATGTACGAAGTAAGATCTGCGATACAAGAGCTTC
ACAAGAAGTATCCTGAAACCACAGTTATCGTGAAGACGTGCAACACACGG
CACCATCAGCACTATAGGGAATCCATCCAGATGTCAGACTGGCTGGCAGA
CCAGTTGAACCAGGGAATGAGGGGCATTCTGGGAGATTTGAATGTCGCCA
TCTTGGACGTGTGGGATATGACCGTGAGCCAGCGGTATCCTCCAAACATA
CACCCAAATGTAAATGTAGTAGACAACGAATTGAACATCCTCATGTCTTA
CATATGCTCAGGGATGAAAACTCCTTAATCATGTGTCTTCGACGGGAAAC
AAGGTCAAGACGTCACAAAGACGTGTACGCATCTTGCAAACCAATCTCTC
TCGTTATCAAGTCAGTGCGACTTCTCGGTGTTGAACACGAGCCGAACTTG
GTTCTGCGAAAAACCGGAGGTGACAGCCTGTAGCAAAATCACAAAGTGCA
GATCCGCTCGGGATATTGTGGATAGACTACTGACTTCTGATGAAGAGCGC
CAACTTTTCGACAGCCCTTTCTTTCGGACGAATTTAGTCCCTGCCACGAA
TGGATCAATCATTGTCTCCAACATTGAAGAAAATGCAACTTTGGCGAGAT
CGCTACCGCTTTGCCAGCCTGGATTGCCGCATTCCGAATCTCAGGGGTTC
TGGTTCCGTGACTCATGGCATTCACTTACTTGTAAGGTTCAACAATTTAG
CCCTCAGGACATTACTGAATGTTTAGCGAACAGAACATTGCAGTTTAGAG
GTGACTCTACATGTCGGCAATGGATTGAACGCCTCGGAGCATTAAAGATT
TTTAAGGAAGGACAAGGAGACAAACAATCTAGATTATTTTTTAGACACTA
CGATAACAACAAAAGTAACATTCAGGCCACATTCAAGTTCCACACTGTCC
CCATCCAAGCTTCGGCTTGGTGGAGGTTTCAAAAATTGAGTGATGCCGGT
GTTTCTACTGAGATCGAGAGAATGGTCGGTGGTACAAATGTTGTGCTTGT
GCTGAGTTTGTGCTCACACTTCACAGCCGAACCAAAACATGTCTACAGTT
CCCGCATGTACGAAGTAAGATCTGCGATACAAGAGCTTCACAAGAAGTAT
CCTGAAACCACAGTTATCGTGAAGACGTGCAACACACGGCACCATCAGCA
CTATAGGGAATCCATCCAGATGTCAGACTGGCTGGCAGACCAGTTGAACC
AGGGAATGAGGGGCATTCTGGGAGATTTGAATGTCGCCATCTTGGACGTG
TGGGATATGACCGTGAGCCAGCGGTATCCTCCAAACATACACCCAAATGT
AAATGTAGTAGACAACGAATTGAACATCCTCATGTCTTACATATGCTCAG
GGATGAAAACTCCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000369 | genome | Sc0000369:144441..147377 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL74394_cuf1 |
| Biotype | protein_coding |
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