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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL74378_cuf1 >transcript:BL74378_cuf1-protein ID=transcript:BL74378_cuf1-protein|Name=transcript:BL74378_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=581bp
MASPKGTSQQLLTHRFPITEIFRFHKSLSLSPFLSHDIMATFSLQACAID
IERGSLLGSADHSPSYGTGEGRSGHHQGTRRDPCGGLVLVMKTVIKGFRS
FCAKLWIAIWPFVGFWWFFFCTIMQLVCLWRARADSGGHNIINETIVDDA
SWYAGDVYNINDTESASVGNRTWWSSWWWSHCHQPHQVEKVISYSLIIGL
FKFMSGILIIRWRYQINWNDLLNNKIKQNVVYDKRYLLALYVILWASTIM
LNHSLKCASCGQVFALRWTIRYFSHHVYDVPHYVCSFVSLSFYAIIYMPS
FLCCSYVIDLTNALVSLASDTKQLANTISSNDQPDRILDEVSDRIKQKSW
SCHSGIGEELGFFTKLTMFVGAVVGFSYANIYFSRISTLMDWVHHVSQLL
SLTVTIMTPFFFVAIGVKKLHDAHDIFISEARKAQVENVRASHGHGEDIC
EKWNLIIAAMKENVVGIVNTEKELYWTALTTIGVILWHLLGHLNKFDDAP
ERNIEDERFALTYFACLTLLLAICATFGALFQLNMIPRCIKPGHRQGSRR
VFMYSVLAGAALLAVVYTPWLIQFNHRECQL Run BLAST on NCBI mRNA from alignment at Sc0000273:260510..265490- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL74378_cuf1 ID=transcript:BL74378_cuf1|Name=transcript:BL74378_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4981bp|location=Sequence derived from alignment at Sc0000273:260510..265490- (Branchiostoma lanceolatum)
ATTAGCACAGGTTGGGTTAGATTGGGAACAGAAGTGAAATATGCTGCATT
TGCTTGAAACTATACTAGGCTTTCTCCTTGTCTCCTACATTCTGTCCGCA
TGGCGGACCGAAACCGGGATTCCCCCAACCAATAATCAACACAACTGTTG
ACGTCAACAGGGGATTTTTCAGCCTCACGTCACACGACAGGCTTATCAGG
ATCTGAATGTACATGTAGCAAACATCGTCTTGCAAGACAGTTCAGTAAGG
TGGTAGCATTTGCCTCTGGACAAGTCCTGACAATTCCGTACTTCTTTGGC
AGTTCCCCGGAAGACCAGAATGGTTAGATGTACATGTCTTCTTAACTTGA
GAACTACAATGATGAATCCTCGCTACAATGGCGATAACTTATGCCCATGA
CCGCAGAAAAAAACATGACCGGATAATGGTCGGTGTATCCATACTCAGAT
ATATCCAGAATAGGATGAGATGATTTAACGTCAGTCATATGGACCTTTGC
ATAACGTTACGTCATGCTACGTTACGCTATCGCATATGGCCTCACCTAAA
GGCACCTCACAACAGCTTCTCACGCACAGATTCCCAATTACGGAAATCTT
CCGCTTTCACAAGTCACTTTCACTTTCGCCATTTCTGAGTCATGACATTA
TGGCGACGTTTTCTTTGCAGGCCTGTGCAATCGACATTGAACGAGGTTCC
CTTTTGGGCAGTGCAGATCATTCGCCGTACGTACCTGATTTGATAGATAT
ATACAAAAACTGAGAAATAACAATAGTTTGGAGACCTCATACCTCCATGA
AATAGCTTAATTGTGCAAATGACTTCCACATATACATGGTTCTCCTTCAT
GCGAGCTACGTAGTCACAGGTCATCCTCTGTGGTAGCGCATGCGCAGCAG
ATCAGCCACCTTCTTCCTGTTCTGAGTATCCAAGTTTTTGCTTAAAAGTG
CGCAACCATACTAAGCACATGAGTTCTAGTAACCTGTTTCGAAAGAAACA
TAAATGGATATTAATATTGCAAATCATGACGTGATTTGCATAATTAAGGA
AAAAATTGTATAGTACCTTAGGGGCAATGATGCCATATATCTATACTATT
GATACACGTATGAAGATGAATATCATCAGGCACAGATTATGTAAATGTTG
ACATTAATTGCATCATTAACGAGGAAATTCTTCAAAAGCTTTTTGATAGA
TATCTGCATCATATGTCATATGGATAAAGGAGATAATGAGTTCATATATC
TAACCTATCTGACGGTATCTATGATAATAATGAGCAACGGCTGCACGAAC
TCATTGGTTAATGATAGAGATTTCATAGACAGTAAGCATTTGATGCAAAT
TAGATGATTTCCATAATCACTAATACTAGTAACATTGTAATGAAGCAAAA
TTACTTGGCTAACGTATGACATCGTGATACTCTAGTTGAACATTGAATTT
TGTGTTTTTATTCCCAGATCATACGGCACCGGCGAAGGACGCAGTGGTCA
TCATCAGGGCACCAGGAGGGACCCTTGTGGTGGACTTGTCCTTGTCATGA
AGACCGTCATCAAAGGCTTCAGGTCATTCTGCGCGAAACTATGGATAGCA
ATCTGGCCTTTTGTTGGCTTCTGGTGGTTCTTTTTCTGTACTATTATGCA
ACTAGTCTGTCTGTGGAGAGCAAGGGCGGACAGTGGTGGTCATAACATTA
TCAATGAGACAATAGTTGATGATGCCTCATGGTATGCTGGAGATGTATAC
AACATCAACGATACAGAAAGCGCATCAGTTGGGAACCGTACTTGGTGGAG
TAGTTGGTGGTGGTCCCATTGTCATCAGCCGCACCAAGTGGAGAAAGTCA
TTTCTTATTCTCTCATCATTGGGCTCTTTAAGTTTATGTCAGGCATACTG
ATCATTCGATGGCGCTACCAAATCAATTGGAATGATCTACTGAACAATAA
GATCAAACAAAATGTAGTGTATGACAAACGGTATTTACTGGCCTTGTACG
TAATTCTGTGGGCCAGCACCATCATGCTTAACCATAGCCTGAAATGTGCC
TCCTGCGGACAGGTCTTTGCCTTACGATGGACGATAAGGTACTTCTCTCA
TCACGTGTACGACGTACCGCACTACGTCTGCTCATTTGTTTCACTGTCAT
TCTATGCTATAATCTACATGCCATCTTTCCTCTGTTGTTCGTATGTTATA
GATTTGACCAATGCTTTAGTGTCCCTGGCCTCTGACACCAAGCAGCTAGC
CAACACCATCAGCAGCAATGACCAACCTGACCGCATTCTCGATGAGGTCT
CTGATAGAATCAAACAGAAGAGTTGGTCATGTCATTCAGGCATTGGTGAA
GAGCTTGGATTTTTCACCAAACTGACAATGTTTGTCGGGGCGGTGGTTGG
TTTCTCGTATGCGAACATTTACTTCTCACGAATATCCACTCTCATGGACT
GGGTTCACCATGTGAGTCAGCTGTTGTCGCTTACTGTCACTATTATGACT
CCATTCTTTTTCGTCGCAATAGGAGTCAAAAAATTGCATGACGCTCATGA
TATCTTTATCAGCGAGGCTAGAAAAGCACAAGTGGAAAACGTGCGTGCCA
GTCATGGACATGGAGAAGATATTTGTGAAAAATGGAATCTAATAATTGCA
GCTATGAAGGAAAATGTGGTCGGCATTGTGAATACCGAAAAGGAGCTTTA
TTGGACGGCTTTAACGACGATAGGTGTGATTCTGTGGCACCTATTGGGCC
ACCTGAACAAATTTGATGATGCCCCAGAGAGAAATATCGAGGATGAGCGA
TTTGCCTTGACCTATTTCGCCTGTTTGACGCTCCTTCTCGCAATCTGTGC
AACATTTGGGGCGTTGTTTCAGTTGAACATGATCCCACGGTGCATTAAGC
CTGGTCATAGGCAAGGAAGCCGCAGGGTTTTCATGTACTCCGTTTTGGCT
GGAGCTGCTCTTCTTGCAGTGGTGTATACTCCCTGGCTAATTCAGTTCAA
CCATAGAGAGTGCCAACTGTGATGGCTGCCTATCTGGTTACTCGCACTCG
GCTCCCTTTTCCTGACTAAATACATTATCTTCGAGCCCTAAGACCAAGAG
GGAACGAAATTCTGACACTAGTACTTTTTTATGAGGCCTTATTGAATCGA
TTATGTGGATGATGTCCTCTGTGAACCACAAAACTCTTGATTAAAAGAAA
GTTTTGCATAAAGATGCCTTCATTAGGAATTCCAACTAGTCTGGAAGGTT
GAACACATGACTAAACACACAGAGTATAATGTTATGGTATACCGAACAAT
AGATGCTTCATTTTTATTCATTTTTGTTCTTACACATCTTCTTTCTTTGA
CTTTGGAATTGACCTTGTCATTCTACAACATTAGCATCTGTTTCCCGATT
GTTTTTTTGCAGTTGACGGCGTATATTTGGTCATTTTGCAGCTGCCTTGT
ACGATTTACAGTATGGTTGAAAACTTTGACGAAAATTGGTGTCATCCATA
TATCGAATCAACATGACCTAAGGATAGTTTTCTGTACTGGACATTGCAAC
TGCCATTCTGTGCAGCGCCATTTTAATATTTGACTGCTCTAATACTTGTT
AAAAAAAAACTACGATATAATTGAAAAAGTGAATTTGTGTACAAATATCT
TAAGAAGAAAGAAGAGACTTTGTAGATTTAGATTGAATATAGCACAATGT
TCCTTTTCTTTTACTTCATGTTACCTAATGCACTTAGCCCGTGTTGGGCA
TGAATATGCAGTAAAGTTCATTGTCATTGTTAATATTTGTATTTGAAAGT
TCATCCGTATTGAGAGTTAATATACAGTACAGAGTTGAGAAAAAAATCCG
CGCATGTAATTAATGGAAATGGAAATGCAGACTCAATGGAATTTCTTTTT
AGATCTACTGCTACTAAATAACTTTGAGCTAAGATCAGCAATTAGCAAAA
TTAGAACTAGGCCCACCCTCTTGAAATTGAGAAAGGGCGAAACAAAAAGT
TTTGTAACTACTGTATGTCAAAAGCGGTAGAATACGAAATACATTTTATC
TCAAAATACCCCTTTAGTGATCAGGAAAGAAAAGAGCTTTTTAAAGGAGC
CATCAAAACGTGCTACAATTTCCAAACGTTTACTGACGAAGAGAAAACTA
TAACCCTGTTAACCTTTCAAAACCCACTCATTGCAAAAAAAGTGGGACAC
TTCGTCTTCCACTGCTTTCAAAAAGAAGTCAAGTCCCAAAAGCGTAAATT
CTATTCCTTAGTAGTTCTTAGAATAGCAATTTCTTCCACTTATCAACATT
GTTAAGTTGCACTATCTGTGTACCTTTTCTATGCATTGTTTCATGTTGCA
ATTCAAATTAGCCCTCGGGCAAGAACTCGCAAATAAAACTCTATTATCAT
TAATCTTAGACTGTCCTACTGCGCTCTTTCTCAAATTCAAGTGACCAATC
AGCTAGCTCGAGCTCACGTGACTGTAGGACCAGGAGTGCCAATTCGTCAG
CAGTCCCGACCATGATGTCATCCTGTGCAGACTTCAGGAGGAATCGACAC
ACCAACAATGCTACTTCCTACACAAGTCGCCAAGCTGCTGCTCGTAGGTC
TGAACGATACACATTCCGCGTACAATTGCGTCTTTAATGCTACCCTAGCC
AAAACAACAACAACAACAGTAGCAACAAAAAGAATGACAACTATTTTTGG
CTTGTTTGTATTCTGTTAAAACATATACATGTATATTTATGCTGATGTAC
ACTTCAATGTCTTTTCTAATTCATCTGGATCAGAACATCAGTTATGACCA
CTGGTGACGGGGGGGGGGGCAGATGAGTCACGTGTTTCACGGAGTCAAGG
CAACCTTCGACCTGTGTAACCCTGTGATTTCAACAGTTAATCATTTTTTA
ACTGAATGATGACATGTTACTAATAGCTGTAAATTGTGTGAATTGCAACT
CAATTCAGGCGTTTCAGACTGCGATGTTGTG Coding sequence (CDS) from alignment at Sc0000273:260510..265490- >transcript:BL74378_cuf1 ID=transcript:BL74378_cuf1|Name=transcript:BL74378_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3492bp|location=Sequence derived from alignment at Sc0000273:260510..265490- (Branchiostoma lanceolatum)
ATGGCCTCACCTAAAGGCACCTCACAACAGCTTCTCACGCACAGATTCCC
AATTACGGAAATCTTCCGCTTTCACAAGTCACTTTCACTTTCGCCATTTC
TGAGTCATGACATTATGGCGACGTTTTCTTTGCAGGCCTGTGCAATCGAC
ATTGAACGAGGTTCCCTTTTGGGCAGTGCAGATCATTCGCCATCATACGG
CACCGGCGAAGGACGCAGTGGTCATCATCAGGGCACCAGGAGGGACCCTT
GTGGTGGACTTGTCCTTGTCATGAAGACCGTCATCAAAGGCTTCAGGTCA
TTCTGCGCGAAACTATGGATAGCAATCTGGCCTTTTGTTGGCTTCTGGTG
GTTCTTTTTCTGTACTATTATGCAACTAGTCTGTCTGTGGAGAGCAAGGG
CGGACAGTGGTGGTCATAACATTATCAATGAGACAATAGTTGATGATGCC
TCATGGTATGCTGGAGATGTATACAACATCAACGATACAGAAAGCGCATC
AGTTGGGAACCGTACTTGGTGGAGTAGTTGGTGGTGGTCCCATTGTCATC
AGCCGCACCAAGTGGAGAAAGTCATTTCTTATTCTCTCATCATTGGGCTC
TTTAAGTTTATGTCAGGCATACTGATCATTCGATGGCGCTACCAAATCAA
TTGGAATGATCTACTGAACAATAAGATCAAACAAAATGTAGTGTATGACA
AACGGTATTTACTGGCCTTGTACGTAATTCTGTGGGCCAGCACCATCATG
CTTAACCATAGCCTGAAATGTGCCTCCTGCGGACAGGTCTTTGCCTTACG
ATGGACGATAAGGTACTTCTCTCATCACGTGTACGACGTACCGCACTACG
TCTGCTCATTTGTTTCACTGTCATTCTATGCTATAATCTACATGCCATCT
TTCCTCTGTTGTTCGTATGTTATAGATTTGACCAATGCTTTAGTGTCCCT
GGCCTCTGACACCAAGCAGCTAGCCAACACCATCAGCAGCAATGACCAAC
CTGACCGCATTCTCGATGAGGTCTCTGATAGAATCAAACAGAAGAGTTGG
TCATGTCATTCAGGCATTGGTGAAGAGCTTGGATTTTTCACCAAACTGAC
AATGTTTGTCGGGGCGGTGGTTGGTTTCTCGTATGCGAACATTTACTTCT
CACGAATATCCACTCTCATGGACTGGGTTCACCATGTGAGTCAGCTGTTG
TCGCTTACTGTCACTATTATGACTCCATTCTTTTTCGTCGCAATAGGAGT
CAAAAAATTGCATGACGCTCATGATATCTTTATCAGCGAGGCTAGAAAAG
CACAAGTGGAAAACGTGCGTGCCAGTCATGGACATGGAGAAGATATTTGT
GAAAAATGGAATCTAATAATTGCAGCTATGAAGGAAAATGTGGTCGGCAT
TGTGAATACCGAAAAGGAGCTTTATTGGACGGCTTTAACGACGATAGGTG
TGATTCTGTGGCACCTATTGGGCCACCTGAACAAATTTGATGATGCCCCA
GAGAGAAATATCGAGGATGAGCGATTTGCCTTGACCTATTTCGCCTGTTT
GACGCTCCTTCTCGCAATCTGTGCAACATTTGGGGCGTTGTTTCAGTTGA
ACATGATCCCACGGTGCATTAAGCCTGGTCATAGGCAAGGAAGCCGCAGG
GTTTTCATGTACTCCGTTTTGGCTGGAGCTGCTCTTCTTGCAGTGGTGTA
TACTCCCTGGCTAATTCAGTTCAACCATAGAGAGTGCCAACTGTGAATGG
CCTCACCTAAAGGCACCTCACAACAGCTTCTCACGCACAGATTCCCAATT
ACGGAAATCTTCCGCTTTCACAAGTCACTTTCACTTTCGCCATTTCTGAG
TCATGACATTATGGCGACGTTTTCTTTGCAGGCCTGTGCAATCGACATTG
AACGAGGTTCCCTTTTGGGCAGTGCAGATCATTCGCCATCATACGGCACC
GGCGAAGGACGCAGTGGTCATCATCAGGGCACCAGGAGGGACCCTTGTGG
TGGACTTGTCCTTGTCATGAAGACCGTCATCAAAGGCTTCAGGTCATTCT
GCGCGAAACTATGGATAGCAATCTGGCCTTTTGTTGGCTTCTGGTGGTTC
TTTTTCTGTACTATTATGCAACTAGTCTGTCTGTGGAGAGCAAGGGCGGA
CAGTGGTGGTCATAACATTATCAATGAGACAATAGTTGATGATGCCTCAT
GGTATGCTGGAGATGTATACAACATCAACGATACAGAAAGCGCATCAGTT
GGGAACCGTACTTGGTGGAGTAGTTGGTGGTGGTCCCATTGTCATCAGCC
GCACCAAGTGGAGAAAGTCATTTCTTATTCTCTCATCATTGGGCTCTTTA
AGTTTATGTCAGGCATACTGATCATTCGATGGCGCTACCAAATCAATTGG
AATGATCTACTGAACAATAAGATCAAACAAAATGTAGTGTATGACAAACG
GTATTTACTGGCCTTGTACGTAATTCTGTGGGCCAGCACCATCATGCTTA
ACCATAGCCTGAAATGTGCCTCCTGCGGACAGGTCTTTGCCTTACGATGG
ACGATAAGGTACTTCTCTCATCACGTGTACGACGTACCGCACTACGTCTG
CTCATTTGTTTCACTGTCATTCTATGCTATAATCTACATGCCATCTTTCC
TCTGTTGTTCGTATGTTATAGATTTGACCAATGCTTTAGTGTCCCTGGCC
TCTGACACCAAGCAGCTAGCCAACACCATCAGCAGCAATGACCAACCTGA
CCGCATTCTCGATGAGGTCTCTGATAGAATCAAACAGAAGAGTTGGTCAT
GTCATTCAGGCATTGGTGAAGAGCTTGGATTTTTCACCAAACTGACAATG
TTTGTCGGGGCGGTGGTTGGTTTCTCGTATGCGAACATTTACTTCTCACG
AATATCCACTCTCATGGACTGGGTTCACCATGTGAGTCAGCTGTTGTCGC
TTACTGTCACTATTATGACTCCATTCTTTTTCGTCGCAATAGGAGTCAAA
AAATTGCATGACGCTCATGATATCTTTATCAGCGAGGCTAGAAAAGCACA
AGTGGAAAACGTGCGTGCCAGTCATGGACATGGAGAAGATATTTGTGAAA
AATGGAATCTAATAATTGCAGCTATGAAGGAAAATGTGGTCGGCATTGTG
AATACCGAAAAGGAGCTTTATTGGACGGCTTTAACGACGATAGGTGTGAT
TCTGTGGCACCTATTGGGCCACCTGAACAAATTTGATGATGCCCCAGAGA
GAAATATCGAGGATGAGCGATTTGCCTTGACCTATTTCGCCTGTTTGACG
CTCCTTCTCGCAATCTGTGCAACATTTGGGGCGTTGTTTCAGTTGAACAT
GATCCCACGGTGCATTAAGCCTGGTCATAGGCAAGGAAGCCGCAGGGTTT
TCATGTACTCCGTTTTGGCTGGAGCTGCTCTTCTTGCAGTGGTGTATACT
CCCTGGCTAATTCAGTTCAACCATAGAGAGTGCCAACTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000273 | genome | Sc0000273:260510..265490 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL74378_cuf1 |
| Biotype | protein_coding |
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