transcript:BL74344_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74344_cuf1
Unique Nametranscript:BL74344_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74344_cuf1

>transcript:BL74344_cuf1-protein ID=transcript:BL74344_cuf1-protein|Name=transcript:BL74344_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=166bp
NHTENEWDHAGMSSLSASEGEKFLLEVDRILYYVAADQKEGSALVRVRKY
NRHLDQWQECSQLQLDGSMDFCVALSCGSFIYLLMKSALHRYDPIPDCWC
ERTPPNLVGRSSRFTAVAMGTEIFCTDREFTKTMVYDTESDCWQKLQGWP
NRGNLSMDHPPSLFVL
Run BLAST on NCBI

mRNA from alignment at Sc0000442:158891..159518-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74344_cuf1 ID=transcript:BL74344_cuf1|Name=transcript:BL74344_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=628bp|location=Sequence derived from alignment at Sc0000442:158891..159518- (Branchiostoma lanceolatum)
ACAACCATACCGAGAATGAGTGGGATCACGCTGGTATGTCCTCATTATCT
GCATCTGAAGGGGAAAAATTCCTTCTTGAAGTTGATAGGATTTTATATTA
CGTTGCTGCTGATCAAAAAGAAGGCAGTGCATTGGTGCGAGTGAGAAAGT
ACAACCGGCACTTGGACCAGTGGCAGGAATGTTCACAGCTGCAACTTGAT
GGATCTATGGATTTCTGCGTCGCTTTGTCCTGTGGTTCTTTCATCTATCT
TCTCATGAAGTCAGCACTGCACCGCTACGACCCGATCCCGGACTGTTGGT
GTGAGCGGACCCCACCAAATCTTGTGGGTCGTTCTTCACGTTTCACAGCT
GTTGCCATGGGAACAGAGATTTTCTGCACAGATAGGGAATTCACCAAGAC
CATGGTGTACGACACAGAGTCAGACTGCTGGCAGAAACTGCAAGGCTGGC
CGAACCGAGGAAACCTTAGTATGGATCACCCTCCGAGTCTTTTCGTACTA
TGACACCTATGACTCTGAACAAAGGCCATCACCACACTATTTCGTATATG
TGTATGACAGGTCTGCTGATGCCTGGAGAGACTTGAAGGCCATACTGCCC
GAAAAGGAGTATTATGCACATGATCCTC

Coding sequence (CDS) from alignment at Sc0000442:158891..159518-

>transcript:BL74344_cuf1 ID=transcript:BL74344_cuf1|Name=transcript:BL74344_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=501bp|location=Sequence derived from alignment at Sc0000442:158891..159518- (Branchiostoma lanceolatum)
AACCATACCGAGAATGAGTGGGATCACGCTGGTATGTCCTCATTATCTGC
ATCTGAAGGGGAAAAATTCCTTCTTGAAGTTGATAGGATTTTATATTACG
TTGCTGCTGATCAAAAAGAAGGCAGTGCATTGGTGCGAGTGAGAAAGTAC
AACCGGCACTTGGACCAGTGGCAGGAATGTTCACAGCTGCAACTTGATGG
ATCTATGGATTTCTGCGTCGCTTTGTCCTGTGGTTCTTTCATCTATCTTC
TCATGAAGTCAGCACTGCACCGCTACGACCCGATCCCGGACTGTTGGTGT
GAGCGGACCCCACCAAATCTTGTGGGTCGTTCTTCACGTTTCACAGCTGT
TGCCATGGGAACAGAGATTTTCTGCACAGATAGGGAATTCACCAAGACCA
TGGTGTACGACACAGAGTCAGACTGCTGGCAGAAACTGCAAGGCTGGCCG
AACCGAGGAAACCTTAGTATGGATCACCCTCCGAGTCTTTTCGTACTATG
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74344gene:BL74344Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74344_cuf1-E1BL74344_cuf1-E1-1564476830-466070Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74344_cuf1transcript:BL74344_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000442genomeSc0000442:158891..159518 -
Properties
Property NameValue
Transcript idBL74344_cuf1
Biotypeprotein_coding