transcript:BL74226_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74226_cuf0
Unique Nametranscript:BL74226_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74226_cuf0

>transcript:BL74226_cuf0-protein ID=transcript:BL74226_cuf0-protein|Name=transcript:BL74226_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=175bp
GFAFLWHLPISYNSNTLQIVSSIGQRIKDIYFQTFLKEIHNDNKGGASKN
KLRSYRLFKTTYNEEKYLSNSNMRVRNAVTRLRISCHKLHIETGRHTRTP
LEQRLCKHCTLNRVEDECHFVVECVLYTKERNELYKLVENLFPYFTHLST
VQKFIFLMRLDKPPIEKHVCSFIST
Run BLAST on NCBI

mRNA from alignment at Sc0000276:304409..304936-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74226_cuf0 ID=transcript:BL74226_cuf0|Name=transcript:BL74226_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=528bp|location=Sequence derived from alignment at Sc0000276:304409..304936- (Branchiostoma lanceolatum)
GCGGGTTTGCTTTCTTATGGCACCTACCAATTTCATATAATTCAAATACG
TTACAAATTGTTAGTTCCATTGGCCAACGGATAAAAGACATTTACTTCCA
AACGTTTCTGAAAGAAATACATAACGACAACAAAGGTGGGGCTTCCAAAA
ATAAGTTAAGATCATATAGATTATTCAAAACTACTTATAATGAAGAAAAA
TATCTAAGTAATTCAAATATGAGGGTCAGGAATGCAGTCACAAGACTAAG
AATCAGCTGCCACAAACTACATATTGAAACGGGAAGACATACCCGCACTC
CTCTAGAACAACGATTATGTAAACATTGTACTTTGAATAGAGTAGAAGAC
GAATGTCATTTTGTGGTAGAATGTGTATTATATACCAAAGAAAGAAATGA
ACTGTATAAACTTGTAGAAAACCTATTTCCCTACTTCACACATTTAAGTA
CTGTTCAAAAATTCATATTTCTAATGCGACTAGACAAACCTCCCATTGAA
AAACACGTCTGTTCTTTTATATCTACTA

Coding sequence (CDS) from alignment at Sc0000276:304409..304936-

>transcript:BL74226_cuf0 ID=transcript:BL74226_cuf0|Name=transcript:BL74226_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=525bp|location=Sequence derived from alignment at Sc0000276:304409..304936- (Branchiostoma lanceolatum)
GGGTTTGCTTTCTTATGGCACCTACCAATTTCATATAATTCAAATACGTT
ACAAATTGTTAGTTCCATTGGCCAACGGATAAAAGACATTTACTTCCAAA
CGTTTCTGAAAGAAATACATAACGACAACAAAGGTGGGGCTTCCAAAAAT
AAGTTAAGATCATATAGATTATTCAAAACTACTTATAATGAAGAAAAATA
TCTAAGTAATTCAAATATGAGGGTCAGGAATGCAGTCACAAGACTAAGAA
TCAGCTGCCACAAACTACATATTGAAACGGGAAGACATACCCGCACTCCT
CTAGAACAACGATTATGTAAACATTGTACTTTGAATAGAGTAGAAGACGA
ATGTCATTTTGTGGTAGAATGTGTATTATATACCAAAGAAAGAAATGAAC
TGTATAAACTTGTAGAAAACCTATTTCCCTACTTCACACATTTAAGTACT
GTTCAAAAATTCATATTTCTAATGCGACTAGACAAACCTCCCATTGAAAA
ACACGTCTGTTCTTTTATATCTACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74226gene:BL74226Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74226_cuf0-E1BL74226_cuf0-E1-1564476830-419056Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74226_cuf0transcript:BL74226_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000276genomeSc0000276:304409..304936 -
Properties
Property NameValue
Transcript idBL74226_cuf0
Biotypeprotein_coding