transcript:BL73895_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL73895_cuf0
Unique Nametranscript:BL73895_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL73895_cuf0

>transcript:BL73895_cuf0-protein ID=transcript:BL73895_cuf0-protein|Name=transcript:BL73895_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=389bp
MPNTMKRMLVLLLIISGGTRPTAACSSSCSWYCDCRNRGLTSVPQDLPAT
ITYLHLGHNDITSIGQSDFSRYNSLTNLVLHFNQISVINSKAFYNLTRLF
PDLSLSNNQLRSLHADTFVGLDNTKSLSLSNNNIHSIEAGTFNTTPQVQY
LNLNNNQLTRIRADMMAGLDNLQTLNLGNNNIHSIEEGTFSTTPQLQTLS
LGYNKISTIASGTFANLPVLQYLYLSHNNINTFPIEALSNLNIPELSRLN
LSYNQMETLPQLAYDILDSISTLYIDNNPWQCDCRMLPFKQKMTGYSDFE
KQIRCTGPDHRVEGKSLLIAVYPEDLNCEEPASFSLPVFLSALGGVVVGI
LLALSVFLIIWSRNRKLRTISTPKSVPVASPDVPGSNRD
Run BLAST on NCBI

mRNA from alignment at Sc0000003:601475..603495-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL73895_cuf0 ID=transcript:BL73895_cuf0|Name=transcript:BL73895_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2021bp|location=Sequence derived from alignment at Sc0000003:601475..603495- (Branchiostoma lanceolatum)
ACTAGTCATCGCTTGAGTTGAAGTGCTATGTTAAGTTTTATTCAGTTTTT GGAAACAACAGACCGTGGATACGGAAAAAGCACTGTTAAACGATTGTACC TGTGATTCCTGATAAGACTGTGCTCAATAACTCGGGTTATAAAACGTTAG ATGATGTTGGCTATTAAAAGACGGATCAGACATAGTTGGCTAACCAATGA AAAAGAAGGATGGACCTTGTCTATAATCTATGATACTATACGGCTGTGTT TACTTTCTATTGTACAGACAAAATGCCCAACACGATGAAGAGGATGCTGG TTCTTCTGCTGATCATCTCGGGGGGAACCAGACCGACCGCAGCCTGCAGC AGCAGCTGTTCGTGGTACTGTGACTGCCGCAATAGAGGCCTCACAAGTGT CCCTCAAGACCTGCCTGCAACCATCACTTACCTTCACCTGGGTCACAACG ATATCACAAGCATAGGCCAGTCCGACTTCTCCAGGTACAACAGCCTGACC AACTTAGTTCTTCATTTCAACCAGATCTCTGTAATCAACAGCAAAGCGTT CTACAACTTAACCAGGTTATTTCCTGATCTGTCTCTTTCAAATAACCAGT TAAGGAGTCTCCATGCTGACACATTTGTGGGACTTGATAACACAAAGAGC CTTAGTCTGTCCAACAACAACATCCACAGTATCGAGGCAGGAACCTTTAA TACCACGCCGCAGGTTCAGTATCTGAACCTCAACAATAACCAGTTAACCA GAATCAGAGCTGACATGATGGCGGGACTTGATAACCTACAGACCCTTAAC TTGGGAAACAACAACATCCACAGTATAGAGGAAGGAACCTTCAGTACCAC CCCGCAGCTCCAAACTCTTAGTCTTGGATATAACAAAATCAGCACCATCG CATCTGGTACATTTGCAAACTTGCCAGTTCTCCAATACTTGTACCTATCT CACAACAACATCAACACTTTCCCCATCGAGGCCTTGTCAAATCTGAATAT TCCAGAATTGTCGAGGCTTAATTTATCCTACAACCAGATGGAGACTCTTC CCCAATTGGCATATGACATACTGGACTCTATCTCAACTTTGTACATTGAC AACAATCCCTGGCAGTGTGACTGTAGGATGCTTCCCTTTAAGCAGAAGAT GACAGGTTATTCAGATTTTGAAAAACAGATCCGATGTACCGGACCTGATC ACCGTGTTGAAGGAAAAAGTTTGTTAATAGCTGTCTACCCCGAGGATCTG AACTGTGAAGAGCCAGCTTCATTTTCCCTGCCAGTGTTTCTCAGTGCGCT AGGGGGCGTGGTAGTCGGTATCCTCCTCGCCCTGTCCGTTTTCCTTATAA TATGGAGCAGAAACAGGAAGTTAAGAACCATTTCTACTCCTAAATCCGTG CCTGTCGCTTCCCCAGACGTACCAGGCAGTAACCGTGACTAGACAGGAAC TGACGTCACGAGAACAGGTGCAGCAGAGTCTGATGACGTCATCAATGGTA TCAAGGATACTAAAAATAATAGAGATGATAATTGCAATGATGATAATAAG AAGAAGAAGCAACTTGTACTTGAAACTCTGCTTAAAATCATCATAATAAT AACAATGGTATAATGATGAAAATAGATACAAAAGTTTGTGATATCTTAAG ATTAAAACGTGAAAGAACGGAATCGCCATCCCTGCCCAAACTTTAGTTTG CTGATGTATTAACATGTTCCAGTGACTACATTGTAGGGCCAGCTCTTATA GTACAATAATACGAACATTGAAGTGTGTTAGCTATTCGTTTGATTGCAGG GATGTTTGCTGTGTGACACTGACGTATATTCAGTCGTATCATCGCGTGGA ATGGTGTATGTAGCGTTTCCTGTAACTGCAGTTCATTCACAGAGAAAATC CTCCGACCCCAAACACACGTCATATACTAGTAGTGTCACGTTATACTGGG GATCCACTGACAGGGAAAATCCCTGACTGGTTGGAAATTCCACTGGCACA ATACGTGTAGGAAGACTCGAC

Coding sequence (CDS) from alignment at Sc0000003:601475..603495-

>transcript:BL73895_cuf0 ID=transcript:BL73895_cuf0|Name=transcript:BL73895_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1170bp|location=Sequence derived from alignment at Sc0000003:601475..603495- (Branchiostoma lanceolatum)
ATGCCCAACACGATGAAGAGGATGCTGGTTCTTCTGCTGATCATCTCGGG
GGGAACCAGACCGACCGCAGCCTGCAGCAGCAGCTGTTCGTGGTACTGTG
ACTGCCGCAATAGAGGCCTCACAAGTGTCCCTCAAGACCTGCCTGCAACC
ATCACTTACCTTCACCTGGGTCACAACGATATCACAAGCATAGGCCAGTC
CGACTTCTCCAGGTACAACAGCCTGACCAACTTAGTTCTTCATTTCAACC
AGATCTCTGTAATCAACAGCAAAGCGTTCTACAACTTAACCAGGTTATTT
CCTGATCTGTCTCTTTCAAATAACCAGTTAAGGAGTCTCCATGCTGACAC
ATTTGTGGGACTTGATAACACAAAGAGCCTTAGTCTGTCCAACAACAACA
TCCACAGTATCGAGGCAGGAACCTTTAATACCACGCCGCAGGTTCAGTAT
CTGAACCTCAACAATAACCAGTTAACCAGAATCAGAGCTGACATGATGGC
GGGACTTGATAACCTACAGACCCTTAACTTGGGAAACAACAACATCCACA
GTATAGAGGAAGGAACCTTCAGTACCACCCCGCAGCTCCAAACTCTTAGT
CTTGGATATAACAAAATCAGCACCATCGCATCTGGTACATTTGCAAACTT
GCCAGTTCTCCAATACTTGTACCTATCTCACAACAACATCAACACTTTCC
CCATCGAGGCCTTGTCAAATCTGAATATTCCAGAATTGTCGAGGCTTAAT
TTATCCTACAACCAGATGGAGACTCTTCCCCAATTGGCATATGACATACT
GGACTCTATCTCAACTTTGTACATTGACAACAATCCCTGGCAGTGTGACT
GTAGGATGCTTCCCTTTAAGCAGAAGATGACAGGTTATTCAGATTTTGAA
AAACAGATCCGATGTACCGGACCTGATCACCGTGTTGAAGGAAAAAGTTT
GTTAATAGCTGTCTACCCCGAGGATCTGAACTGTGAAGAGCCAGCTTCAT
TTTCCCTGCCAGTGTTTCTCAGTGCGCTAGGGGGCGTGGTAGTCGGTATC
CTCCTCGCCCTGTCCGTTTTCCTTATAATATGGAGCAGAAACAGGAAGTT
AAGAACCATTTCTACTCCTAAATCCGTGCCTGTCGCTTCCCCAGACGTAC
CAGGCAGTAACCGTGACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL73895gene:BL73895Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL73895_cuf0-E1BL73895_cuf0-E1-1564476830-40931Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL73895_cuf0transcript:BL73895_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:601475..603495 -
Properties
Property NameValue
Transcript idBL73895_cuf0
Biotypeprotein_coding