transcript:BL72948_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72948_cuf0
Unique Nametranscript:BL72948_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72948_cuf0

>transcript:BL72948_cuf0-protein ID=transcript:BL72948_cuf0-protein|Name=transcript:BL72948_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=144bp
TRWYDRDNPGGTGDWETFPSLRNENPGQICSAPSAIEARRRGTQTTASQT
GEKFHNFDTTVGFACRNSDQSDRSCLDYEVRFCCPPPTGCTTPPSLAYTY
RSGCSSPYTNGERCTYRCRSGYTRVSGSTTRTCSSGSWTGTNLV
Run BLAST on NCBI

mRNA from alignment at Sc0000029:1559347..1560074-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72948_cuf0 ID=transcript:BL72948_cuf0|Name=transcript:BL72948_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=728bp|location=Sequence derived from alignment at Sc0000029:1559347..1560074- (Branchiostoma lanceolatum)
GGACACGCTGGTATGACCGTGACAACCCGGGTGGCACCGGGGACTGGGAG
ACCTTTCCTTCGCTGCGGAATGAGAATCCCGGACAGATCTGTTCAGCACC
CTCGGCCATCGAAGCCCGTCGCCGAGGGACCCAAACTACGGCCTCCCAAA
CAGGGGAGAAGTTCCACAACTTCGACACCACAGTCGGCTTCGCCTGCAGG
AACAGCGACCAGAGTGACCGCTCCTGCCTCGACTACGAAGTGCGCTTCTG
CTGTCCCCGTGAGTTTTATTTTTAAAAAGCCAAAGAGAAACCGCCAACAG
ATTGTTTAGATTGATTATAAACGAATGACAATGGAAAACAACCGAAAACA
AAGGTAAAATCATACAAACGGTTACCACCATATATTTCAGGAAAGGAAAA
CTAACTAAATAGAAGGTTGTATCCAAACTTTCTACAACTAGGAAGAGTTT
TAAATCTCTAATCACCTAAACACATTCTTTTTTTTTCGGTGAACTTATGC
GTATGGAACATATGCGTATGGAACTGTGTCTTACAATTATACTTTCTACC
AGCTCCAACAGGCTGCACTACACCACCATCCCTAGCCTACACCTACCGGA
GCGGCTGTTCCTCCCCCTACACCAATGGTGAGAGGTGTACCTACCGATGC
CGTTCTGGATACACCCGAGTATCCGGCAGTACCACCAGGACCTGCTCTAG
TGGAAGCTGGACAGGGACCAACCTCGTC

Coding sequence (CDS) from alignment at Sc0000029:1559347..1560074-

>transcript:BL72948_cuf0 ID=transcript:BL72948_cuf0|Name=transcript:BL72948_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=864bp|location=Sequence derived from alignment at Sc0000029:1559347..1560074- (Branchiostoma lanceolatum)
ACACGCTGGTATGACCGTGACAACCCGGGTGGCACCGGGGACTGGGAGAC
CTTTCCTTCGCTGCGGAATGAGAATCCCGGACAGATCTGTTCAGCACCCT
CGGCCATCGAAGCCCGTCGCCGAGGGACCCAAACTACGGCCTCCCAAACA
GGGGAGAAGTTCCACAACTTCGACACCACAGTCGGCTTCGCCTGCAGGAA
CAGCGACCAGAGTGACCGCTCCTGCCTCGACTACGAAGTGCGCTTCTGCT
GTCCCCCTCCAACAGGCTGCACTACACCACCATCCCTAGCCTACACCTAC
CGGAGCGGCTGTTCCTCCCCCTACACCAATGGTGAGAGGTGTACCTACCG
ATGCCGTTCTGGATACACCCGAGTATCCGGCAGTACCACCAGGACCTGCT
CTAGTGGAAGCTGGACAGGGACCAACCTCGTCACACGCTGGTATGACCGT
GACAACCCGGGTGGCACCGGGGACTGGGAGACCTTTCCTTCGCTGCGGAA
TGAGAATCCCGGACAGATCTGTTCAGCACCCTCGGCCATCGAAGCCCGTC
GCCGAGGGACCCAAACTACGGCCTCCCAAACAGGGGAGAAGTTCCACAAC
TTCGACACCACAGTCGGCTTCGCCTGCAGGAACAGCGACCAGAGTGACCG
CTCCTGCCTCGACTACGAAGTGCGCTTCTGCTGTCCCCCTCCAACAGGCT
GCACTACACCACCATCCCTAGCCTACACCTACCGGAGCGGCTGTTCCTCC
CCCTACACCAATGGTGAGAGGTGTACCTACCGATGCCGTTCTGGATACAC
CCGAGTATCCGGCAGTACCACCAGGACCTGCTCTAGTGGAAGCTGGACAG
GGACCAACCTCGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72948gene:BL72948Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72948_cuf0-E1BL72948_cuf0-E1-1564476830-173777Branchiostoma lanceolatumexon
BL72948_cuf0-E2BL72948_cuf0-E2-1564476830-173774Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72948_cuf0transcript:BL72948_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000029genomeSc0000029:1559347..1560074 -
Properties
Property NameValue
Transcript idBL72948_cuf0
Biotypeprotein_coding