transcript:BL72942_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72942_cuf0
Unique Nametranscript:BL72942_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72942_cuf0

>transcript:BL72942_cuf0-protein ID=transcript:BL72942_cuf0-protein|Name=transcript:BL72942_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=108bp
EQDWQHKKMLPWRRWSLLTFSFLAHMQIRTSHKSYQSITFSTKITQVVQC
MKILFSQKKISYHFLINYVNEALYARFVSNSGHIYLTSKWCKNEIPIIYH
YGFIVFCH
Run BLAST on NCBI

mRNA from alignment at Sc0000553:58696..59078+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72942_cuf0 ID=transcript:BL72942_cuf0|Name=transcript:BL72942_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=383bp|location=Sequence derived from alignment at Sc0000553:58696..59078+ (Branchiostoma lanceolatum)
GAACAAGATTGGCAACATAAAAAGATGTTGCCATGGCGACGGTGGTCTCT
GTTAACGTTTTCGTTTTTAGCCCACATGCAAATAAGGACCTCGCATAAAT
CATATCAGTCGATCACCTTCTCTACCAAAATAACACAAGTTGTCCAATGT
ATGAAAATCTTGTTTTCACAAAAAAAGATATCGTACCATTTCCTCATAAA
TTATGTAAATGAGGCCCTCTATGCAAGATTTGTGTCTAATAGTGGCCACA
TTTACTTAACTTCCAAATGGTGCAAAAATGAAATCCCCATCATTTACCAC
TATGGATTTATAGTATTTTGTCATTAATTATGCAAATTAAGTATCAATTT
GCATAATTGATATCTATCGATATTTATCTCTTT

Coding sequence (CDS) from alignment at Sc0000553:58696..59078+

>transcript:BL72942_cuf0 ID=transcript:BL72942_cuf0|Name=transcript:BL72942_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=327bp|location=Sequence derived from alignment at Sc0000553:58696..59078+ (Branchiostoma lanceolatum)
GAACAAGATTGGCAACATAAAAAGATGTTGCCATGGCGACGGTGGTCTCT
GTTAACGTTTTCGTTTTTAGCCCACATGCAAATAAGGACCTCGCATAAAT
CATATCAGTCGATCACCTTCTCTACCAAAATAACACAAGTTGTCCAATGT
ATGAAAATCTTGTTTTCACAAAAAAAGATATCGTACCATTTCCTCATAAA
TTATGTAAATGAGGCCCTCTATGCAAGATTTGTGTCTAATAGTGGCCACA
TTTACTTAACTTCCAAATGGTGCAAAAATGAAATCCCCATCATTTACCAC
TATGGATTTATAGTATTTTGTCATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72942gene:BL72942Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72942_cuf0-E1BL72942_cuf0-E1-1564476830-481419Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72942_cuf0transcript:BL72942_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000553genomeSc0000553:58696..59078 +
Properties
Property NameValue
Transcript idBL72942_cuf0
Biotypeprotein_coding