transcript:BL72260_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72260_cuf0
Unique Nametranscript:BL72260_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72260_cuf0

>transcript:BL72260_cuf0-protein ID=transcript:BL72260_cuf0-protein|Name=transcript:BL72260_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
MTKFYVVVCLLGVMSLTQTFKVTPQPPTWPSAFSVDFHEVYRFINISAIP
SNDGAWYYDYNIRRARFDHLQGQSNYFCQGRGLTLKDNHSDCHLIFATEM
YVHYPREKQCCR
Run BLAST on NCBI

mRNA from alignment at Sc0000106:992756..993302+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72260_cuf0 ID=transcript:BL72260_cuf0|Name=transcript:BL72260_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=547bp|location=Sequence derived from alignment at Sc0000106:992756..993302+ (Branchiostoma lanceolatum)
GTTTCTTGCTAGATAAAGTCCATTACCTTGAAGTTCGTAAAAAGAAGTGA
CTGAGGTTAGTGAGCTGTACTATACGCATTGCAGTTTGTTCACCTGATCA
TCTGCGGACGGTTCAGAAGGTTCAAAAGTCACGGGTTCAAAGGTGAACGG
TCACGGTCTCCACCATTGTACTGACGTGTATGTAGTGAAGACTAGAGTCT
GTCGTCAACATGACAAAGTTTTATGTCGTTGTGTGTCTGCTGGGGGTGAT
GTCCTTGACTCAAACCTTCAAGGTCACCCCACAGCCGCCGACATGGCCTT
CAGCCTTCTCAGTAGATTTTCACGAAGTGTATAGGTTTATCAACATTTCC
GCCATTCCCAGCAACGACGGCGCTTGGTACTACGACTACAACATAAGGAG
AGCGCGGTTTGACCACTTGCAGGGGCAATCCAACTATTTCTGTCAGGGGC
GTGGCTTGACGCTGAAGGACAACCACAGCGACTGTCACTTGATCTTCGCT
ACAGAAATGTACGTGCATTACCCCCGGGAGAAACAGTGCTGCCGGNN

Coding sequence (CDS) from alignment at Sc0000106:992756..993302+

>transcript:BL72260_cuf0 ID=transcript:BL72260_cuf0|Name=transcript:BL72260_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=336bp|location=Sequence derived from alignment at Sc0000106:992756..993302+ (Branchiostoma lanceolatum)
ATGACAAAGTTTTATGTCGTTGTGTGTCTGCTGGGGGTGATGTCCTTGAC
TCAAACCTTCAAGGTCACCCCACAGCCGCCGACATGGCCTTCAGCCTTCT
CAGTAGATTTTCACGAAGTGTATAGGTTTATCAACATTTCCGCCATTCCC
AGCAACGACGGCGCTTGGTACTACGACTACAACATAAGGAGAGCGCGGTT
TGACCACTTGCAGGGGCAATCCAACTATTTCTGTCAGGGGCGTGGCTTGA
CGCTGAAGGACAACCACAGCGACTGTCACTTGATCTTCGCTACAGAAATG
TACGTGCATTACCCCCGGGAGAAACAGTGCTGCCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72260gene:BL72260Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72260_cuf0-E1BL72260_cuf0-E1-1564476830-308374Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72260_cuf0transcript:BL72260_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000106genomeSc0000106:992756..993302 +
Properties
Property NameValue
Transcript idBL72260_cuf0
Biotypeprotein_coding