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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL72258_cuf0 >transcript:BL72258_cuf0-protein ID=transcript:BL72258_cuf0-protein|Name=transcript:BL72258_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
MHKLENHETSREDQLEELSCYLDSSRGKLSGILQRLGWTDDKTAYVDMVM CPLDSGHRVPPSRLAEHVKDCRLAKAGYDPEERERMKESSQFYYTNSQSV VPVMVDRDIQEQVISQC Run BLAST on NCBI mRNA from alignment at Sc0000002:1184602..1193612+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL72258_cuf0 ID=transcript:BL72258_cuf0|Name=transcript:BL72258_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=9011bp|location=Sequence derived from alignment at Sc0000002:1184602..1193612+ (Branchiostoma lanceolatum) CCGGCCATCAGTTGGTGGCGCAACTAGACCGTGGAACCACGCTAGTTGTT
TGCATGATGGGTAGGGCGAGATCATTTGTGGCAAGGGTATAAAATCTAAA
CTTTTTTTTACAAATATGTACCATACATACGTACCATATAATTACGTTGT
AAAGAATACACAGGTAGTTATTATCACTATAAATCGTTTAATTTTGTAGA
AATATGGTTCCAGTTTCGTCTTAACAAATCGTGTATATCGACTCAATTTC
TAATATTCCCCTGTATAAAAGTAAATCATTCCAAAATGGCCGTCGAGGTC
TGAAAATTTTGTCAGGCGTGTTTCTTCTCCGTGTGTTTGATTCAGTTTGA
CGCCTAAGACCGCTTCTACATTGTTATAACAATCAAGACAAGGTTTGCTT
AGTTTAGGAGCTTCCAAATTTTGTTTGTTGACATCCAAAACCATGCACAA
GCTGGAAAATCATGAGACCAGTAGAGAAGACCAGCTAGAGGAACTGTCGT
GTTACCTGGATAGCAGTAGGGGGAAACTTAGCGGTATCCTACAGCGGCTC
GGATGGACGGACGACAAAACAGCCTATGTTGTAAGTTCATCAGTTTTGTC
TTCCGTAGAATGGTGACAGAATACAGCAACTTGACGTCTGAATATATGAT
AATTACATAATAACACGTTAAACAGCCTCATTACCCTACACATTGGGTAC
CTGCCTGTGGCACTGGCTGCAAATACACCTGATATTATTATTATAATACA
CTCCGTTTAGAAAAGAGATTATATGAACTCCTCAACACGGGGAAACTTAC
AAACTTAGCCAACTCAGAAATGATTTTCTTATCGGTTATGATTTAAAACT
CATTCACTCGTATACCCACACGCACGCACGCATGCGCAGTTTTTGCGCAC
ACACACACACACACACTTAGTAGACGCACACACTCACACACAGACATACA
CACAGACACACAAACACACACACTTTCATACATACACACAATCACATTCA
TTCACTCACTCACTCATGATCACTCACTCACTCACTCACTCACTCACTCA
CTCACTCACTCACTCACTCACTCACTCACTCACTCATGATCACTTATTCA
CTTTCACTCACTTTTAGTTTTATTCTTTAATTGCTCACTCATGATCAGGC
ACCTGCCTAACCAACTCACTAAACCATGAACTGAACTGCACTGATGCATG
TAACTTTACTTCTATCTTTCAGGACATGGTGATGTGCCCACTTGATTCTG
GCCATCGGGTCCCACCATCCAGGCTAGCAGAACATGTAAAGGACTGTAGG
CTGGCAAAGGCCGGGTATGATCCTGAGGAAAGGGTCGGTGCAGAATCATG
TTGTCTAACAAAGAACATACATAATGCATGTACAAATGTATATCAGAAAA
CAACAAATAATTGAACTGGAATTTGAAGACAACGGCAAACTTTTTATTTC
ACATTGAAGGTTTCCCTTTTGTAAAATGATAACAGTAAAATACACAGATC
TAGTTTTTTTCTTTTCCAAATCAGGATGACTTTAAGAATGGTTGAAATGA
CAAAATGCACATCTTGTAGAAAATTCAGTTTATAGTAGCTTCACCACATG
TATGGCAGGGGCACAGGTACATGTAACGTAACATGACCTATTTACGTGCA
GAACCTATTTATGTCCTGTTTGCCTCATGTCCACATATCGCGGTGTATTA
TGCCAAAGCCTGTTCTCATGACCAATAAAGAACATCATAAGTATGATCCT
TAGCAATCTCTTTAATTTTTGCACAGCAAACCATAATGGCGATGCGTTTA
CCACGTGAATGCCATGTGCTGCGCATGTGGGGGGAATTTACAGATAATTG
TTTTTTTCCATCGCGTTAAGCAAGTGGCCGGACAGACATAGTGATTTTAT
TATCATTTGTCTGCAGACTACTTTGGACAGTTACTGTGCATTTTTTTCTG
GTCTATGTTCTTCAAGCATAGCGCTAGAAGGGAAAAGACCGAGGTGGACG
ATAATGGGTTACCCTAGCACAATTTTTCATCATATACCTCAGTATAAATA
CATGCTCGCATGTCGTTAAACAGGCGAAGAAAAACTTACAGACCATGCAT
TTTCTTTTTAGAAGAGCTGATATTTCTGACCATGGGTTTAAATTTTGGCT
CTGTCAGTGCGGTTTTAAGATAAATACGTTTTGAATAAATCGGACGTAAA
GTGGTCATGTTACGTTACATGTAGTACATATGGTGGTGGCTAGAGCTGTG
TACCGGAACACTGTTCCGATACAGTACCGGGTACAATCAATTAGGTACAG
GTCCAAAATACCTGAATCTGCTGTATCAGTACTGGACCTGACTCAGGGGA
TGCCCACTTTGACAGATAAAATTACTATGAAATTACCGTGGCAGTGCTCT
AAAGCCACTCTTAGTCTTAAGCACAGAAAACACATTTGCATGGCTGGAGT
CAAATTTTCATCTGTGTTTTCATAAAAATAATACCTTAGTAGCACAATCA
AATACTATGTTTTTACCAATTCAAACATGCTTTTGTCCTTATTGAAAATC
TAGCATTTTCCGAACAAGTAGTTAAGGTACAGCTTCAGGTCCGGACCTGT
ACCTTAAAAACCTGTGTACCTGTACCTGTACTTTAATTTGTTTAGTACAC
AGCTAGCTCTAGTGGTGGCAGAAATGGATACTTGCAGCTTCTAATCATGA
TGTTTGTAATCATGAATGTACATTCTTTGTAGGAGAGGATGAAGGAGAGC
TCCCAATTCTACTACACTAACTCCCAGTCAGTTGTACCAGTCATGGTTGG
TAAGTGGTTTATTGGTTTATTGGTAAAAGGACTCCATTAGTGAGTACACG
AGTGTACTACACTACTCTTCCTGGAGTCACATCATGTTGAACATACAGAT
TACATTGGGACACATACACATAACATAACATTACATGATATGTACATATT
TACATCAATTTCAAATTTCAAATTGCTACCATATCATAATGTTTGTGTCC
ATTTTTACTCTGTCTCTGATGTGTATTTTGAATGTGGATGGTACAGATGT
TCTGATATGATATGGAAGAGCGTTGTATGATTTTGAGCACCGGTAGAGAA
AAGACTTTGTTGCAGCTGTTGTTTTAGGTTTTGGCAGTTTGAAATCGTTC
CTTTTTGAAGATCTTGTGCTGTAAGTATGTTGGTCGGATACGAGGTGTAG
TTTACTGTGGAGAGTGGATGGTTGTTTGAAGAAGAGTATCTTATGGAAAC
TGCACATGTTATTGGTGAAAAGTCTCTCGGTCACAGTCTGCCATGATAAC
GCACTGTGTGAGTTCANTGAAATCGTTCCTTTTTGAAGATCTTGTGCTGT
AAGTATGTTGGTCGGATACGAGGTGTAGTTTACTGTGGAGAGTGGATGGT
TGTTTGAAGAAGAGTATCTTATGGAAACTGCACATGTTATTGGTGAAAAG
TCTCTCGGTCACAGTCTGCCATGATAACGCACAGTTCATTTCCCTGACTG
ATATTCGGTAAGATCCCAGAATAAGTTTTGCCGCCTTATTCTGCATCACT
TGTAGAGCATTGATGTTTTTTTGTGTGGTAGAAGTCCAAACCGCTGTGCA
GTAGTCCAAGTGTGTCAAGGTGAGTGTTTCCGTCAACAATTTCAACAACG
ACTGGTCCAAATATGCCGCACTTCTTCTGATGGCACCCAAGGATCGAGCC
ATTTTCTTCGTCATTTCTTTTATGTGGAGGTCCCATGTAAGACATTGATC
CAATGTACTCCCAACTAGCTTCATAGTTGTAACCTGCTGTATTGGGCTCC
CGTCAGCAGATAAGGTGAGTTCAGGCTTCTTTGACATTTTTGGTTTACTC
CCAATCAACATACACTTGGTCTTTTTTGCGTTCAAGAACAGTTTGTTCAA
ACGCACCCATTCACATATGTTATTCATATCTGTCTGTAACTTAACCGTAA
CTGTATCAACTGATGGCGCACACGCATATGCTGATGTATCGTCTGCGTAC
ATGGCGGGGGTGGTCTCCGTCACGGTAAGTGGCAAGTCGTTGGTAAAGAT
CGTAAACAACAAAGGACCAAGGCAACTCCCTTGGGGAACGCCACAATGTA
TCTCCCTGAAGGTTGAATTCGTGCCGTTACACTGTTTTCTCCCTGCCAAG
TAACTGCCCATCCAACCAACCGCTGTATCTGAGAACCCGTAGCATATCAG
TTTTTTTAACAAATGGCNCTGCCAAGTAACTGCCCATCCAACCAACCGCT
GTATCTGAGAACCCGTAGCATATCAGTTTTTGTAACAAATGGCTGTGGTC
CACCAAGTCAAAAGCAGCGGAGAAATCCAGAAAGATGACCCCGACGATGT
TCCCCTGGTCGATTTTACAATACCAGTCATCAACTAGTTGCAAGAGTGCA
GTCCCAGTGGAGTGATGCTTTCTGTAGGCGTGCTGGTAAGGTGTCATCAG
GGCGTTCCCTTGGAAATAGTCCGATATTTGAGAACTAACAACTTTCTCCA
TTACTTTGCTAAAAGCAGGCAGGAGACTAATTGGCCTGCTGTTCGGTCCG
CTTAAACGAGCCGTTGCCGACTTGGCTAAAGGAACAACCTTGGCTCTTTT
CCATGCTGTCGGATATACAGAGGTAGTAAGCGATAAGTTTATAATGTAGC
ACAGTGGTCTTGCAATATGGTCGGCAGCTAACTTTAACAGATTGTTGTCG
ACTTGGTCTAGACCAGTAGCTTTCCCANACACTGTTTTCTCCCTGCCAAG
TAACTGCCCATCCAACCAACCGCTGTATCTGAGAACCCGTAGCATATCAG
TTTTTGTAACAAATGGCTGTGGTCCACCAAGTCAAAAGCAGCGGAGAAAT
CCAGAAAGATGACCCCGACGATGTTCCCCTGGTCGATTTTACAATACCAG
TCATCAACTAGTTGCAAGAGTGCAGTCCCAGTGGAGTGATGCTTTCTGTA
GGCGTGCTGGTAAGGTGTCATCAGGGCGTTCCCTTGGAAATAGTCCGATA
TTTGAGAACTAACAACTTTCTCCATTACTTTGCTAAAAGCAGGCAGGAGA
CTAATTGGCCTGCTGTTCGGTCCGCTTAAACGAGCCGTTGCCGACTTGGC
TAAAGGAACAACCTTGGCTCTTTTCCATGCCGTCGGATATACAGAGGTAG
TAAGCGATAAGTTTATAATGTAGCACAGTGGTCTTGCAATATGGTCGGCA
GCTAACTTTAACAGATTGTTGTCGACTTGGTCTAGACCAGTAGCTTTCCC
ATCCGACAAAGCCAGAAGGTGTTTGCGGATCTGTTCGCAGTGTACCGGTT
TGAACTGGAAACTACAGTCTTTTCCCGCCATGATCTTATCCCTTATCAGC
CCGAGAAGGTCCCCGTCTGGTTGCGAGTCGAACCCCTCCCTCAGAGAGTT
AACCTTCTGTGTAAAGAATGAATTGAAATAATCCGCTATGTCTCCGGCCT
TTGTGAGGATCACTCCGTCACGTTCTACGGTACAGGCCGACCGAGAAGGT
CCCCTGCCCATCATTCCATTTAGTGTTCTCCACATTTCCTTCGGGTTGTT
TCTGGACTCCGCTATTTTAGATTTGAAAAACGCAGCTTTCTTTTTCCGGT
TTAGTTTGACAGCTGTATTCCTTAGTTTCTTGTATATACTCAAATCTGAA
GCAAGGCCTGTCGCAAGGGCTTCCCTTCTGGCGTCATCCCTGAGCCTCAT
TATTTCTCTGAGTTCGTCGTCCAGCCAACCTGCCGGGTTAGATCTAACAG
TACGTTTTCTGACGGGAGCATGTTGATCAGCTACGTTGCAGAACATTGTT
GTAAAGACGTCCAGTGCTTCATTTACGTCTGACTCGTCATATACAATGTG
CCAAGGCACCATACTGATGTCGTGTTGAAAGTCGTCTGGGTGGAACTTGC
TGTAGGACCTTTTGTAGACTACACGNCAGTCATGGTTGGTAAGTGTTGCC
TGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTG
CCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGT
TGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGT
GTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAA
GTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGT
AAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTG
GTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGT
TGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATG
GTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCA
TGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGT
CATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCA
GTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTAC
CAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGT
ACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTT
GTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAG
TTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTC
AGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAG
TCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCC
AGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTC
CCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAAC
TCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCA
ACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACAC
CAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTAC
ACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTT
ACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTG
TTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCC
TGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTG
CCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGT
TGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGT
GTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAA
GTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGT
AAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTG
GTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATGGT
TGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCATG
GTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGTCA
TGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCAGT
CATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTACCA
GTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGTAC
CAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTTGT
ACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAGTT
GTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTCAG
TTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAGTC
AGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCCAG
TCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTCCC
AGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAACTC
CCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCAAC
TCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACACCA
ACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTACAC
CAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTTAC
ACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTGTT
ACACCAACTCCCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGCCTG
TTACACCAACTACCAGTCAGTTGTACCAGTCATGGTTGGTAAGTGTTGTC
TGTATGCTGCAGTACCGGCTCCTGCAGACAGGGTGTGAAACAACTATCAC
TTGCAGACCAAATTACCAAGAAAACTGGCTTTAGATAGACCTCTTGATAT
GAAAGATGTATCATAATAGACTGTTTCATATCCATATGTCACTGTGAGAT
TAAGTTTCACTTTCAGTACAGTATTTGTGTCTGATTTATCGATGGCACTT
CTAGATCTGCAGAAGTCAGATAACAGTTATCTATTTCTCATTTGAGAATA
AAGCATGATGATTGTGTATCTTCTTTGCATTTAGCATTTATCTAAAGGTA
ACTTATATATATTATAATTAATAGTACTCAGTTTTCAAACATTAAAAACA
GATTTCTGCAGGTTAAATTGCTTGATTATTGCTGAAGTTCTTACAGTTGA
CTTTTTGAATGGATTCTAATTGTAGATAGAGACATTCAGGAGCAGGTTAT
TTCCCAGTGTG Coding sequence (CDS) from alignment at Sc0000002:1184602..1193612+ >transcript:BL72258_cuf0 ID=transcript:BL72258_cuf0|Name=transcript:BL72258_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1404bp|location=Sequence derived from alignment at Sc0000002:1184602..1193612+ (Branchiostoma lanceolatum) ATGCACAAGCTGGAAAATCATGAGACCAGTAGAGAAGACCAGCTAGAGGA ACTGTCGTGTTACCTGGATAGCAGTAGGGGGAAACTTAGCGGTATCCTAC AGCGGCTCGGATGGACGGACGACAAAACAGCCTATGTTGACATGGTGATG TGCCCACTTGATTCTGGCCATCGGGTCCCACCATCCAGGCTAGCAGAACA TGTAAAGGACTGTAGGCTGGCAAAGGCCGGGTATGATCCTGAGGAAAGGG AGAGGATGAAGGAGAGCTCCCAATTCTACTACACTAACTCCCAGTCAGTT GTACCAGTCATGGTTGATAGAGACATTCAGGAGCAGGTTATTTCCCAGTG TATGCACAAGCTGGAAAATCATGAGACCAGTAGAGAAGACCAGCTAGAGG AACTGTCGTGTTACCTGGATAGCAGTAGGGGGAAACTTAGCGGTATCCTA CAGCGGCTCGGATGGACGGACGACAAAACAGCCTATGTTGACATGGTGAT GTGCCCACTTGATTCTGGCCATCGGGTCCCACCATCCAGGCTAGCAGAAC ATGTAAAGGACTGTAGGCTGGCAAAGGCCGGGTATGATCCTGAGGAAAGG GAGAGGATGAAGGAGAGCTCCCAATTCTACTACACTAACTCCCAGTCAGT TGTACCAGTCATGGTTGATAGAGACATTCAGGAGCAGGTTATTTCCCAGT GTATGCACAAGCTGGAAAATCATGAGACCAGTAGAGAAGACCAGCTAGAG GAACTGTCGTGTTACCTGGATAGCAGTAGGGGGAAACTTAGCGGTATCCT ACAGCGGCTCGGATGGACGGACGACAAAACAGCCTATGTTGACATGGTGA TGTGCCCACTTGATTCTGGCCATCGGGTCCCACCATCCAGGCTAGCAGAA CATGTAAAGGACTGTAGGCTGGCAAAGGCCGGGTATGATCCTGAGGAAAG GGAGAGGATGAAGGAGAGCTCCCAATTCTACTACACTAACTCCCAGTCAG TTGTACCAGTCATGGTTGATAGAGACATTCAGGAGCAGGTTATTTCCCAG TGTATGCACAAGCTGGAAAATCATGAGACCAGTAGAGAAGACCAGCTAGA GGAACTGTCGTGTTACCTGGATAGCAGTAGGGGGAAACTTAGCGGTATCC TACAGCGGCTCGGATGGACGGACGACAAAACAGCCTATGTTGACATGGTG ATGTGCCCACTTGATTCTGGCCATCGGGTCCCACCATCCAGGCTAGCAGA ACATGTAAAGGACTGTAGGCTGGCAAAGGCCGGGTATGATCCTGAGGAAA GGGAGAGGATGAAGGAGAGCTCCCAATTCTACTACACTAACTCCCAGTCA GTTGTACCAGTCATGGTTGATAGAGACATTCAGGAGCAGGTTATTTCCCA GTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000002 | genome | Sc0000002:1184602..1193612 + |
Properties
Property Name | Value |
Transcript id | BL72258_cuf0 |
Biotype | protein_coding |
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