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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL72195_cuf1 >transcript:BL72195_cuf1-protein ID=transcript:BL72195_cuf1-protein|Name=transcript:BL72195_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=273bp
TATAEFQHRWPRPEWYNGTAADSIRNLTSYLFEPCGHFLPYSYPAKTIAT
LNTKEDCGRITPVGHYWTCAIVGNGGILLHSGCGKEIDRNDFVIRMADSP
LRKFEKDVGKKVNLTVVNRMFLNKMPMGKRKMNWYSQWLVTRNNSIVSNV
LSGSELLKNLTAEVKNLHLNITITYSVYRTRHQVRSFWNETLMTFLPMPS
TGLITYSLASTFCDVITLYGFYPFKKDVHKKRVRYHYYDKGRKGKHHDLR
SEHYLLKSLHNLGVIKMVTDFCK Run BLAST on NCBI mRNA from alignment at Sc0000185:282181..287399- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL72195_cuf1 ID=transcript:BL72195_cuf1|Name=transcript:BL72195_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5219bp|location=Sequence derived from alignment at Sc0000185:282181..287399- (Branchiostoma lanceolatum)
ACCGCTACTGCCGAGTTTCAACATAGGTGGCCGAGGCCTGAATGGTACAA
CGGTACTGCAGCTGACTCTATCAGGTTAGAAATAGGGCATGATTTATTTT
CATACGTTGTGATTTCTTTTTCAGGGAAACTACAGTACCAAATATACTTT
TTTAATTGCTTTTCTAGTTTTTCAAATTTTTCTTCACTCGTGGACAACTT
TTATTATATTAGTGTGACCGCGTGACGTCACAGGTCTTGCATTCAGTGGG
AGGGCGGATATCAAAGTCGTCAAAATCTTCATTTTCAACTGGATTCTCTT
CAATCTCCATGATCTAAGTCTTTCGGAGTTCGGACAGCACTGTTTGTGAG
ACACGCGGGCAGCTACAAAGTGTTGTTGGTGGTGGTGGTCACGTGGGACG
CTCAGACCTGTGACGTCACGCGGTCGTCACGCGGGGTCACGAGGCAGTAG
AGGTCAACCGATGTCACCGGGCGGCGGCGTATGCCGCGATTTTCGAATTA
ATAATATAGCGGTGAATTATGACGGACTAATGTAATTTCGATGGAGAGTA
TACTTTTTGGTACATTCAGCATAGCATAGTAGGATTCCCGACCATACCTT
TTGGCTTCCTTTAATACACAAAGTTGACTTCTATTAAGAGATTTTTTCTG
CGTATAAAAAGAAACAAAATAAATCAGAAAAGGCATTTTTGATAGTGTAT
ATGGTGAATTTATTTTGCGTAGTATTGATGTTTCGGTAACCTATATTTTT
ATTGTAGATTTGTGCTATGTTAACTCCATCTATACTGTGGGGGGGGGAGT
GCCCGCGCCAACTATGACATCGTATAACTGCTAAACGACCTGTGCTAGGA
CTACCAAACTTGGTGACTTTACCTAGAATTAGGTTGGCAACAACTTCTAA
ATAATTGTTTTAAGTGTATCATTTTCGTTTTGCCAACGGGTTTCTGACCC
CTCCACGCAGACAATAAGGAATCAAAGGTGGTAAGAACTAATCGCAATTC
AAATTTCAGCTACCTTGATTAAATCGTATGACTCTGTTTTGCAGGAACCT
GACAAGTTACCTTTTTGAGCCTTGTGGACATTTTCTTCCCTATTCCTACC
CTGCCAAAACGATTGCAACCCTTAACACTAAGGAGGACTGTGGCCGAATA
ACACCAGTTGGACATTACTGGACATGTGCAATCGTCGGCAATGGTGGAAT
TCTTCTTCACAGCGGCTGTGGTAAGGAAATTGACCGCAACGACTTTGTAA
TCAGAATGGCTGACTCCCCATTAAGAAAATTTGAAAAGGTAATATTTCAG
TGTTTATATTAAACTTTAATTGATGTATGCAACTCGTTCTTTTTTAAATA
AGCAAAATGCTCGCGGTATTATTTTGGTCATGATATGGTCCATTTTTTTC
GTATTCCCACAACAATTGCGCATGCTATCTTTTACTAATAAGGTACTACA
TGATTAGCATAGGTTAATGGGTTGGTAGAAACTATAGCCAGTGGGAATTC
GTCCGTTAACGAACGCCTACGAGGACACGGAAAGTTTCAAAATCATGACT
TAAAGGTAACAATTTAGCTCCAAGAATGTTTAGTTGGCTGGTGAGGCCAG
CTAGCGAGGCTCTTTGATAGATCAAGTCAAACTTCTCATGTCCCTATTCT
TGCAGGTTATATTAGGTAGTTTATGCCTGTAACATGACTAGGTTGATATG
AAGAGTGCAGAAATCGTTGTCTTTATAGACTTCCCAAATGTATCATGGAG
ATAAATTTTACATTATATATTCATTCATTTGATAGATATCAATTGTTTAC
ATGAACCGGAATTTTGTAGATTATATATAGTGTATGGGTAGTCATAGCAG
CCTGATGTTTTAGNATATATAGTATATGGGTAGTCATAGCAGCCCGATGT
TTTAGCATCAAGGAAACACAGATCATGCCGTGGTCTGTATAATATGTGTT
GATAACTGTAGCATTGATACTGTCCTGTACATGTCCACGGACGTCAACAC
GATCAAGAAGGGTACCGTTGTCATTGGTGGGGGCTTGAACTTGTTGATTA
AAGGCGGCCTGTCCAATTATGGAGAGGATTGATAGATGCCACGTGTTTGA
AAGTGTTGTCATAGAACACAGAGGATGTGTGCAATTTCATCAATTATTCA
AATTAGCTTCCGGGTAAGCCACCCGAAGTCATGATAATGATGATGCGCTC
CTGTTTGGCATGAAAAGGATTTTACTACGTCAATCATCAGATAAACAAAG
CAGAAACATTTTAACCCTCAAACCACCGTAGCTTTTTTACGACTAATCTT
ACCGTATGGGGTCAAAACTGACCCCACAATGTTTTCTACAAATTTAATAT
AGCTTTACTAGTGACTATTTTTGTGGTTTATATATATGTATAGTTAAAGC
TTTCTATAAGGGAAAGTTTGACATGATGAGGTGTGAATAATTTCTGCTCA
TTATCATAATTTATGCAAAAATAGGGAACATCGTCTTTTGCAACTAACGC
TATTCAGACAATCGGGCTCTTTTGAGGCCTGCGCCAACACCTGATGTCAT
ATAGCATCTGAATGTCTTACGCTAGAACAACCAAACTTGGCCACCTTTGC
TAAAATTTCGTTGGCAACAATTTTAATTTAATGAAATATCTAATCCTTGT
TTTCATGTTGCTATGGCAACCGGTTTCTTAGGGCCATATTTGGAAAAAAA
ATCGCTAATTTTGGATTTTACAATGTAATTCTAGGGCTGTCTTTTAAAAC
TGCACTTATTTTCTTTCATCAATACCAACCAATTTACTTCACTATCATTT
TTATGATTTGATATTCATGATTTATGCATATTTGATTGCGTCATCAGTCA
AAATCTAAGATGGCGGACGATATAATTAGATTAGCTATAACCGGCTATTT
CAACCTCAAATTTCATCATTACCATGTTTATTCAAACAGAAACAATCTTG
ATATAAACGTTTTGGTCCATTTCTATTGTGTTATTAGGTAATATGATGAA
AAAATGCAATTAAAATAAGTCAAGATGGCGGAACCAAGATGGCGGATCTC
GCTAGTGTAACTTGATATGAATATAATTTTATGACGTCATTTTGACGTCG
TTCCTGTTGCCATCTACAAATAACGTCTTTGGATATGTTATGATTTATCC
TACATAAGTTCTATTTAAGTTTTATCGTGTACCTTTGAATTACATGGAAA
TACCCAATTTGTTGGTTTTCGTCAATAAAATCACATAAATGACGTCATAA
TACGTCGCAACGTCATTAATCTTTACGTTCATTCAATTTTTTTTCACACT
ATATGCTACAACATTATATGTTGTAACTATGATCAAAATAACCCTTATCA
TACATGTTACTAGACGACAAGTATCAAACAATAGGGAATATGAGTGTAGA
TTTTGCTGGGGTCAGTTTTGACCCCACTGGACCATGCGTAAACTTTCTGG
GATAACTTAATCAACAATGAGCCAATCTCGGTAAAAACTTGTGAGAAGTT
ACAAGGCATATATAAAAACAAGCTCAAAGAAGGAATTTTGTTTTCGACTC
GAAATGTCAAAATGGCACATGTTGATATACGCCTGGGGTCGGTTTTCACC
CCATACGGTGGTTTGAGGGTTAAACGTCGAATACATTGTTTGCTTTATTC
CAATCATCAAATCAACAAAGAAGAACCAATTTAAATGTCGACTTTATTGT
TTGCATTACTTTCAAATCCTGGCAACATAGATCCATGTTCTATGACAATA
GCGTATTTTGTAACTTTGAGATGCCGTTGAAAGAGTCTTTTCTCGCTATG
GCCTACAAAGCATCTTAGCGCAGAGCATAACTATAGCATCACGGATACTT
ACCAGGTCGTTACAATATGTGTGTTTTTTTCAAGATACTCGGGAATAAAC
TAATTTGTATCCACAGGATGTAGGCAAGAAGGTGAACTTGACAGTTGTGA
ATCGAATGTTTTTGAATAAAATGCCGATGGGAAAGAGAAAAATGAATTGG
TACTCACAATGGCTAGTTACACGAAACAACTCTATAGTAAGCAACGTGCT
CTCGGGATCCGAGTTGCTGAAGAATCTAACGGCCGAGGTTAAGAATTTAC
ATCTGAACATCACAATCACTTACTCCGTGTACAGGACAAGGCATCAGGTG
AGAAGGTAAGTGTCGAAGCATAGAACGAAGTCTATTTACTGTAAACTACG
TTTATATAAAAAAGGTAGTATACCCCAGATTCTGTGTCTGTACTAATCGA
TGTATATTGGTAAAATGACAGAAATCGAGGAATTTAGAAATTGAGTCTTA
GTATGGAAATTCCCCTTGAACGGCACAATATGTCGTACCGGATTCCACAA
GCAAGCCATTGCAATTATCTATATTTTTTTTACTATATTGAAAGTTTTAT
TGCAAGTTCATGCCTGTGGGATAATTGCAAATACATGGTAAAAACATAGG
GAAAAACATTCATGTGTCAGTGAACTGTGACTGACTTTCTGGTAACAATA
GGCTACTAATAGTATACTAAATACGACTGTTGGTTATATCTAAACAAGCT
GGGTTTGACTTCTTTTGGGGGGACAATGGAAGAGTGGTTATATTATAGGT
AAAAAAAGACTCTTGCACAGAGTAAACATCAAGCAAGGATGCCAGGGTCT
AATCTCATATTTTTTATGCAACGAGCTAGACGTAAAAACATATAAATTAT
CAAAACAATCAAATCAATCAATTTGTCCCCGATTGTGAGAAAACTGTTCA
CCGACGAAACAAAACAGTACATGCTACCACGAACGTCTTAGCCAAGGCAA
TATTTATCTTAAGATTCAAGCTAGCAACATCTTATCTTACTTCTCGCTTA
ATTCTTTAACACATATTTAATCACCGAGCAGCCTGGCAAGTTGTTTTTCA
GTGTTAACAATCTGATTAGTTAATTTTCTGTTCTTTTATACAGCTTTTGG
AACGAGACCCTTATGACATTTTTACCGATGCCGTCGACTGGGCTAATCAC
CTACAGTCTTGCTTCAACATTCTGCGATGTCATCACTCTATACGGCTTTT
ACCCTTTTAAAAAGGATGTGCACAAAAAAAGAGTGCGTTACCATTACTAC
GACAAGGGGAGAAAGGGAAAACATCATGACCTTCGTTCTGAGCATTACCT
CCTAAAGTCACTTCATAATTTGGGAGTTATCAAGATGGTGACGGATTTTT
GTAAATGATTTTTTTGTAA Coding sequence (CDS) from alignment at Sc0000185:282181..287399- >transcript:BL72195_cuf1 ID=transcript:BL72195_cuf1|Name=transcript:BL72195_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3288bp|location=Sequence derived from alignment at Sc0000185:282181..287399- (Branchiostoma lanceolatum)
ACCGCTACTGCCGAGTTTCAACATAGGTGGCCGAGGCCTGAATGGTACAA
CGGTACTGCAGCTGACTCTATCAGGAACCTGACAAGTTACCTTTTTGAGC
CTTGTGGACATTTTCTTCCCTATTCCTACCCTGCCAAAACGATTGCAACC
CTTAACACTAAGGAGGACTGTGGCCGAATAACACCAGTTGGACATTACTG
GACATGTGCAATCGTCGGCAATGGTGGAATTCTTCTTCACAGCGGCTGTG
GTAAGGAAATTGACCGCAACGACTTTGTAATCAGAATGGCTGACTCCCCA
TTAAGAAAATTTGAAAAGGATGTAGGCAAGAAGGTGAACTTGACAGTTGT
GAATCGAATGTTTTTGAATAAAATGCCGATGGGAAAGAGAAAAATGAATT
GGTACTCACAATGGCTAGTTACACGAAACAACTCTATAGTAAGCAACGTG
CTCTCGGGATCCGAGTTGCTGAAGAATCTAACGGCCGAGGTTAAGAATTT
ACATCTGAACATCACAATCACTTACTCCGTGTACAGGACAAGGCATCAGG
TGAGAAGCTTTTGGAACGAGACCCTTATGACATTTTTACCGATGCCGTCG
ACTGGGCTAATCACCTACAGTCTTGCTTCAACATTCTGCGATGTCATCAC
TCTATACGGCTTTTACCCTTTTAAAAAGGATGTGCACAAAAAAAGAGTGC
GTTACCATTACTACGACAAGGGGAGAAAGGGAAAACATCATGACCTTCGT
TCTGAGCATTACCTCCTAAAGTCACTTCATAATTTGGGAGTTATCAAGAT
GGTGACGGATTTTTGTAAATGAACCGCTACTGCCGAGTTTCAACATAGGT
GGCCGAGGCCTGAATGGTACAACGGTACTGCAGCTGACTCTATCAGGAAC
CTGACAAGTTACCTTTTTGAGCCTTGTGGACATTTTCTTCCCTATTCCTA
CCCTGCCAAAACGATTGCAACCCTTAACACTAAGGAGGACTGTGGCCGAA
TAACACCAGTTGGACATTACTGGACATGTGCAATCGTCGGCAATGGTGGA
ATTCTTCTTCACAGCGGCTGTGGTAAGGAAATTGACCGCAACGACTTTGT
AATCAGAATGGCTGACTCCCCATTAAGAAAATTTGAAAAGGATGTAGGCA
AGAAGGTGAACTTGACAGTTGTGAATCGAATGTTTTTGAATAAAATGCCG
ATGGGAAAGAGAAAAATGAATTGGTACTCACAATGGCTAGTTACACGAAA
CAACTCTATAGTAAGCAACGTGCTCTCGGGATCCGAGTTGCTGAAGAATC
TAACGGCCGAGGTTAAGAATTTACATCTGAACATCACAATCACTTACTCC
GTGTACAGGACAAGGCATCAGGTGAGAAGCTTTTGGAACGAGACCCTTAT
GACATTTTTACCGATGCCGTCGACTGGGCTAATCACCTACAGTCTTGCTT
CAACATTCTGCGATGTCATCACTCTATACGGCTTTTACCCTTTTAAAAAG
GATGTGCACAAAAAAAGAGTGCGTTACCATTACTACGACAAGGGGAGAAA
GGGAAAACATCATGACCTTCGTTCTGAGCATTACCTCCTAAAGTCACTTC
ATAATTTGGGAGTTATCAAGATGGTGACGGATTTTTGTAAATGAACCGCT
ACTGCCGAGTTTCAACATAGGTGGCCGAGGCCTGAATGGTACAACGGTAC
TGCAGCTGACTCTATCAGGAACCTGACAAGTTACCTTTTTGAGCCTTGTG
GACATTTTCTTCCCTATTCCTACCCTGCCAAAACGATTGCAACCCTTAAC
ACTAAGGAGGACTGTGGCCGAATAACACCAGTTGGACATTACTGGACATG
TGCAATCGTCGGCAATGGTGGAATTCTTCTTCACAGCGGCTGTGGTAAGG
AAATTGACCGCAACGACTTTGTAATCAGAATGGCTGACTCCCCATTAAGA
AAATTTGAAAAGGATGTAGGCAAGAAGGTGAACTTGACAGTTGTGAATCG
AATGTTTTTGAATAAAATGCCGATGGGAAAGAGAAAAATGAATTGGTACT
CACAATGGCTAGTTACACGAAACAACTCTATAGTAAGCAACGTGCTCTCG
GGATCCGAGTTGCTGAAGAATCTAACGGCCGAGGTTAAGAATTTACATCT
GAACATCACAATCACTTACTCCGTGTACAGGACAAGGCATCAGGTGAGAA
GCTTTTGGAACGAGACCCTTATGACATTTTTACCGATGCCGTCGACTGGG
CTAATCACCTACAGTCTTGCTTCAACATTCTGCGATGTCATCACTCTATA
CGGCTTTTACCCTTTTAAAAAGGATGTGCACAAAAAAAGAGTGCGTTACC
ATTACTACGACAAGGGGAGAAAGGGAAAACATCATGACCTTCGTTCTGAG
CATTACCTCCTAAAGTCACTTCATAATTTGGGAGTTATCAAGATGGTGAC
GGATTTTTGTAAATGAACCGCTACTGCCGAGTTTCAACATAGGTGGCCGA
GGCCTGAATGGTACAACGGTACTGCAGCTGACTCTATCAGGAACCTGACA
AGTTACCTTTTTGAGCCTTGTGGACATTTTCTTCCCTATTCCTACCCTGC
CAAAACGATTGCAACCCTTAACACTAAGGAGGACTGTGGCCGAATAACAC
CAGTTGGACATTACTGGACATGTGCAATCGTCGGCAATGGTGGAATTCTT
CTTCACAGCGGCTGTGGTAAGGAAATTGACCGCAACGACTTTGTAATCAG
AATGGCTGACTCCCCATTAAGAAAATTTGAAAAGGATGTAGGCAAGAAGG
TGAACTTGACAGTTGTGAATCGAATGTTTTTGAATAAAATGCCGATGGGA
AAGAGAAAAATGAATTGGTACTCACAATGGCTAGTTACACGAAACAACTC
TATAGTAAGCAACGTGCTCTCGGGATCCGAGTTGCTGAAGAATCTAACGG
CCGAGGTTAAGAATTTACATCTGAACATCACAATCACTTACTCCGTGTAC
AGGACAAGGCATCAGGTGAGAAGCTTTTGGAACGAGACCCTTATGACATT
TTTACCGATGCCGTCGACTGGGCTAATCACCTACAGTCTTGCTTCAACAT
TCTGCGATGTCATCACTCTATACGGCTTTTACCCTTTTAAAAAGGATGTG
CACAAAAAAAGAGTGCGTTACCATTACTACGACAAGGGGAGAAAGGGAAA
ACATCATGACCTTCGTTCTGAGCATTACCTCCTAAAGTCACTTCATAATT
TGGGAGTTATCAAGATGGTGACGGATTTTTGTAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000185 | genome | Sc0000185:282181..287399 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL72195_cuf1 |
| Biotype | protein_coding |
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