|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL72132_cuf0 >transcript:BL72132_cuf0-protein ID=transcript:BL72132_cuf0-protein|Name=transcript:BL72132_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=723bp
TVPLLTTTELVPRLCHASVCRITTIPPRAVMAVPLSLTPRNSTGTTPHNF
VGLLEPRSYEDRGLAVARTVAAADHAKSYAEVTNTTDKPITLHPDTPMGS
FWALEDDDIADYLGPSPPTPAPTPPPLNLQHSDLSPMQTEQLQKLVDTYS
DVFSTCPRDRGRTNLTSHRILTGDSPPIKQRPHRTPIHRQAEIHRQVEAM
LADDVIEPSSSPWASPVVLARKKDGSFRFCVDYRKLNQATIKDAHPLPRT
DDVIDALSGAAFFTTLDMTSGYWQVDLDPDDREKSAFTTGRGLFQFKVMA
FGLTNAPSTFQRLMELLLAGLDWRSCLAYLDDIIVFSRTFPEHLATLEEI
FQRCRTANLKLNSKKCQFARPQVRFLGHVVSKRGIQPDPANTEKVKNWPT
PTSTAEIRAFLGLASYYRKFIQNFAHIADPLVALTRKNVTFCWTNACQAA
FDSLREALVTPPVLAYPDFHRPLTLYTDASNAAVGAVLTHPDPAGERVIS
YASKTLTKQERNWSTYDRELWAIVWSVRHYSSYLAGHTFTVVTDHKPLVG
GLSPKLIANDPTGRRTRWAVELSTYQFSIVYRPGKSHCNADAMSRRPPIE
RDTSSQATIPLADKDPDQTDPKVLARQRMEPEQHPSLPASEPPTSLAAAA
GNISTTKAPTTTIAAVDQQPATSTNSSDDTSVGPSLSSDNLRQAQEADPD
IAEVLQWKRGRRGRPSFNAIQHR Run BLAST on NCBI mRNA from alignment at Sc0000143:214822..216993+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL72132_cuf0 ID=transcript:BL72132_cuf0|Name=transcript:BL72132_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2172bp|location=Sequence derived from alignment at Sc0000143:214822..216993+ (Branchiostoma lanceolatum)
AACGGTGCCCTTGCTAACGACAACTGAACTCGTCCCACGACTCTGTCATG
CATCTGTCTGCCGAATCACCACTATTCCGCCTCGCGCAGTCATGGCTGTT
CCATTGTCCCTAACACCTCGGAACTCCACTGGCACCACGCCCCACAACTT
CGTCGGCTTGCTCGAGCCACGTAGCTACGAGGACAGGGGTTTGGCCGTAG
CACGGACAGTCGCGGCAGCCGACCATGCCAAGTCGTATGCCGAGGTCACC
AACACCACTGACAAACCTATTACACTACACCCAGACACACCCATGGGCTC
CTTCTGGGCCCTCGAGGATGATGACATCGCAGACTATCTAGGCCCATCCC
CTCCCACACCGGCTCCAACACCTCCGCCCCTCAATCTCCAGCACTCAGAT
CTCTCCCCAATGCAGACAGAGCAACTGCAAAAGCTGGTAGACACTTACTC
TGATGTCTTCAGCACTTGCCCTAGGGATAGGGGCCGTACTAACCTGACTT
CTCACCGGATCCTCACCGGGGACAGCCCGCCTATCAAACAACGACCTCAC
CGTACGCCCATCCACCGCCAAGCTGAAATCCATCGACAAGTGGAGGCCAT
GCTCGCAGACGATGTTATCGAGCCAAGCAGCAGCCCATGGGCCTCTCCGG
TGGTGTTAGCCCGGAAAAAGGATGGCTCATTTCGTTTCTGCGTTGATTAC
CGCAAATTGAATCAGGCAACAATCAAAGATGCACATCCCCTACCCAGGAC
TGATGATGTTATCGACGCATTGTCCGGTGCCGCATTCTTCACCACACTGG
ACATGACCTCAGGTTACTGGCAAGTTGACCTTGACCCTGATGACCGTGAA
AAGTCAGCATTCACGACAGGACGCGGCCTCTTCCAGTTCAAGGTCATGGC
CTTCGGACTTACGAATGCGCCATCGACCTTTCAACGCCTGATGGAGCTTC
TCCTCGCTGGGCTAGACTGGCGCTCCTGCTTAGCATACTTGGACGACATC
ATTGTGTTCTCACGGACCTTCCCAGAACACTTGGCCACCTTGGAAGAGAT
CTTCCAACGCTGTCGTACAGCCAACCTTAAGCTCAACTCCAAGAAATGCC
AGTTCGCACGACCGCAAGTCCGTTTCCTCGGCCATGTTGTCTCTAAACGA
GGAATCCAACCCGACCCGGCCAACACGGAGAAAGTCAAGAACTGGCCAAC
CCCAACATCTACAGCTGAGATCAGGGCTTTTCTGGGCCTGGCATCTTACT
ACAGGAAATTCATCCAGAATTTTGCCCACATCGCAGACCCCTTGGTTGCA
TTGACGAGGAAGAACGTTACATTCTGCTGGACCAATGCCTGCCAAGCAGC
ATTTGACTCCTTGCGAGAAGCCCTCGTTACCCCGCCAGTGTTAGCATACC
CGGACTTCCATCGCCCTCTCACATTATACACAGATGCCTCAAACGCGGCT
GTGGGGGCTGTCTTGACTCATCCAGATCCAGCAGGGGAACGAGTGATCTC
CTACGCCAGCAAAACTCTCACCAAACAGGAGCGTAACTGGTCTACATATG
ACAGAGAGCTATGGGCCATCGTCTGGAGTGTTCGCCATTACAGCTCCTAC
TTGGCTGGACATACGTTTACTGTTGTCACCGATCACAAACCACTCGTCGG
TGGCCTGAGCCCTAAGCTTATTGCCAACGACCCCACTGGCCGACGTACAA
GATGGGCCGTTGAGCTTTCCACCTATCAGTTTAGCATCGTCTACCGGCCC
GGAAAGTCTCACTGCAATGCGGATGCCATGTCTCGCCGCCCTCCAATAGA
GAGAGACACCAGCTCTCAGGCGACCATTCCCCTTGCCGACAAGGACCCTG
ACCAAACGGATCCAAAGGTACTAGCACGGCAACGCATGGAGCCAGAGCAG
CATCCCAGCCTGCCTGCAAGTGAGCCACCCACATCGCTTGCGGCCGCAGC
AGGAAACATTTCCACAACTAAGGCACCGACAACCACAATCGCAGCCGTTG
ACCAGCAACCAGCAACGTCAACCAACTCGTCAGATGACACTTCAGTGGGA
CCGTCCCTGTCGTCCGATAATCTGCGTCAAGCACAAGAAGCAGACCCTGA
CATAGCGGAAGTCCTTCAGTGGAAACGCGGTCGACGGGGCCGACCTTCTT
TCAATGCCATTCAGCACAGAGG Coding sequence (CDS) from alignment at Sc0000143:214822..216993+ >transcript:BL72132_cuf0 ID=transcript:BL72132_cuf0|Name=transcript:BL72132_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2169bp|location=Sequence derived from alignment at Sc0000143:214822..216993+ (Branchiostoma lanceolatum)
ACGGTGCCCTTGCTAACGACAACTGAACTCGTCCCACGACTCTGTCATGC
ATCTGTCTGCCGAATCACCACTATTCCGCCTCGCGCAGTCATGGCTGTTC
CATTGTCCCTAACACCTCGGAACTCCACTGGCACCACGCCCCACAACTTC
GTCGGCTTGCTCGAGCCACGTAGCTACGAGGACAGGGGTTTGGCCGTAGC
ACGGACAGTCGCGGCAGCCGACCATGCCAAGTCGTATGCCGAGGTCACCA
ACACCACTGACAAACCTATTACACTACACCCAGACACACCCATGGGCTCC
TTCTGGGCCCTCGAGGATGATGACATCGCAGACTATCTAGGCCCATCCCC
TCCCACACCGGCTCCAACACCTCCGCCCCTCAATCTCCAGCACTCAGATC
TCTCCCCAATGCAGACAGAGCAACTGCAAAAGCTGGTAGACACTTACTCT
GATGTCTTCAGCACTTGCCCTAGGGATAGGGGCCGTACTAACCTGACTTC
TCACCGGATCCTCACCGGGGACAGCCCGCCTATCAAACAACGACCTCACC
GTACGCCCATCCACCGCCAAGCTGAAATCCATCGACAAGTGGAGGCCATG
CTCGCAGACGATGTTATCGAGCCAAGCAGCAGCCCATGGGCCTCTCCGGT
GGTGTTAGCCCGGAAAAAGGATGGCTCATTTCGTTTCTGCGTTGATTACC
GCAAATTGAATCAGGCAACAATCAAAGATGCACATCCCCTACCCAGGACT
GATGATGTTATCGACGCATTGTCCGGTGCCGCATTCTTCACCACACTGGA
CATGACCTCAGGTTACTGGCAAGTTGACCTTGACCCTGATGACCGTGAAA
AGTCAGCATTCACGACAGGACGCGGCCTCTTCCAGTTCAAGGTCATGGCC
TTCGGACTTACGAATGCGCCATCGACCTTTCAACGCCTGATGGAGCTTCT
CCTCGCTGGGCTAGACTGGCGCTCCTGCTTAGCATACTTGGACGACATCA
TTGTGTTCTCACGGACCTTCCCAGAACACTTGGCCACCTTGGAAGAGATC
TTCCAACGCTGTCGTACAGCCAACCTTAAGCTCAACTCCAAGAAATGCCA
GTTCGCACGACCGCAAGTCCGTTTCCTCGGCCATGTTGTCTCTAAACGAG
GAATCCAACCCGACCCGGCCAACACGGAGAAAGTCAAGAACTGGCCAACC
CCAACATCTACAGCTGAGATCAGGGCTTTTCTGGGCCTGGCATCTTACTA
CAGGAAATTCATCCAGAATTTTGCCCACATCGCAGACCCCTTGGTTGCAT
TGACGAGGAAGAACGTTACATTCTGCTGGACCAATGCCTGCCAAGCAGCA
TTTGACTCCTTGCGAGAAGCCCTCGTTACCCCGCCAGTGTTAGCATACCC
GGACTTCCATCGCCCTCTCACATTATACACAGATGCCTCAAACGCGGCTG
TGGGGGCTGTCTTGACTCATCCAGATCCAGCAGGGGAACGAGTGATCTCC
TACGCCAGCAAAACTCTCACCAAACAGGAGCGTAACTGGTCTACATATGA
CAGAGAGCTATGGGCCATCGTCTGGAGTGTTCGCCATTACAGCTCCTACT
TGGCTGGACATACGTTTACTGTTGTCACCGATCACAAACCACTCGTCGGT
GGCCTGAGCCCTAAGCTTATTGCCAACGACCCCACTGGCCGACGTACAAG
ATGGGCCGTTGAGCTTTCCACCTATCAGTTTAGCATCGTCTACCGGCCCG
GAAAGTCTCACTGCAATGCGGATGCCATGTCTCGCCGCCCTCCAATAGAG
AGAGACACCAGCTCTCAGGCGACCATTCCCCTTGCCGACAAGGACCCTGA
CCAAACGGATCCAAAGGTACTAGCACGGCAACGCATGGAGCCAGAGCAGC
ATCCCAGCCTGCCTGCAAGTGAGCCACCCACATCGCTTGCGGCCGCAGCA
GGAAACATTTCCACAACTAAGGCACCGACAACCACAATCGCAGCCGTTGA
CCAGCAACCAGCAACGTCAACCAACTCGTCAGATGACACTTCAGTGGGAC
CGTCCCTGTCGTCCGATAATCTGCGTCAAGCACAAGAAGCAGACCCTGAC
ATAGCGGAAGTCCTTCAGTGGAAACGCGGTCGACGGGGCCGACCTTCTTT
CAATGCCATTCAGCACAGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000143 | genome | Sc0000143:214822..216993 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL72132_cuf0 |
| Biotype | protein_coding |
|
