transcript:BL72095_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72095_cuf1
Unique Nametranscript:BL72095_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72095_cuf1

>transcript:BL72095_cuf1-protein ID=transcript:BL72095_cuf1-protein|Name=transcript:BL72095_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=129bp
MTKSTKPYPRSKSPHQPRRRAVSPYPSLKNPSLSTTELRLEDLNQMAATP
EATMEEVRRHQAQKWMQELKRTEEQRAEVDETKSVIPTYPWTGVTDEHVK
PEHLGRKKQKYLGRKLICTCSLCVFRFQI
Run BLAST on NCBI

mRNA from alignment at Sc0000066:1233738..1236925-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72095_cuf1 ID=transcript:BL72095_cuf1|Name=transcript:BL72095_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3188bp|location=Sequence derived from alignment at Sc0000066:1233738..1236925- (Branchiostoma lanceolatum)
AATACGACAGTAGAGAAAGCTTATCAGAATGAGGTCCGCCTGAATGACAT
ATCATGTTACAGTCAAGTTCGCGCCATTCAGACGACAGTTTCGCATCTGA
AGTTTACAGGTTGCATTGTCAATTGGCACCAAAGCCCTATGAACGTATCT
AACCCTACCATCCCAAATCCCGCTACCTGACGCCTTCACATGCCAGCAGA
CGGGTCCGGATGGGACATCATCACGGCCCTGGGGAAAATGTATCGGTAGC
TCCCAGAAGACGACCCCCCGACCACCAGCTATGACGAAGAGCACTAAGCC
CTACCCTCGCTCCAAGAGCCCTCATCAACCAAGACGGCGAGCAGTGAGCC
CCTACCCCTCGCTCAAGAATCCCTCACTATCAACGACGGTATACACTTTC
CTTCAACGAATCGATGTTTCCTAACGTTCACCTAATGTGCCTATCAATGA
CACTGATCGTTGAACAAAAACACAATGGTCAATTCAGGATTTTGAAAAAA
AAAATTAATCAGCTGACTTTGTACAGTATCCCATGATTGTGAAGCCACCA
GCAATAACATAACTCAGTACGTCTAGGCACAGATTAATTACTTCCTCATA
GATAGACAAACTGAATACTGATTGACTGGCATAGATCTCTAATCTAGTAT
AAGGGAAGTCTGGCGTCAGGCTATTGCCGGGGTTGTGGCTGTTGACGTAT
TTTCTGGTAGAGAAGCAGCATGTACTCTCTGCATAGCGGAGAGAATGTAC
GGTCAAACAGGCTAATGTAACCCGTGACTTTTGGTGTATCCTGACCTTAT
AGTTTATAGCATTTTTTTTCAATTTAACATGTTGCTTCGTCACTTTTATC
CTCTTTGTTCATAGGAACTCAGGCTGGAGGACTTAAACCAGATGGCCGCT
ACTCCTGAAGGTGACTCCCTTCACTTCTGGTCATGGACTGTCAAGACATT
TACATTGTACTGTCAATTATATTATTTTGCATTGCTAATAGGATGTCAAC
AGCCTTGGCTTTAAAAATGTCCTTTGTTGTAACTCGTAGGAGATAGAAGA
AGCCAATAAGCGTTGGAAGGCGAACTATCCTGGTATGAACAGATATTTCT
TTTTAATCCTGGATATTTGAACTGCATCAATAACAATTTCAACTGACCTT
GTCAGTGCTGTTCATACTGAATAAGGATGATATCTATGACTGGGACGATT
GCGAAATGGCTACATAATCAAGTCAATTACGAATTCAACTGAATGGCTGA
TCATGATGTTTATGTGCACACAGCCACGATGGAGGAGGTTCGGCGGCACC
AGGCACAGAAGGTATGTCCACTGCTGATCACTGGGATGTTTGCACCAACA
CTGTGGTCATGGTTGATGCTAACGGCACGTATTATCATATATAGTATTTG
CTTCCATTCAAAGGCACGACGGGCCAATGACCTTGTCTTATTGCGATCAT
AATATTGAAAAACAATTTCCATGTTCACATGTACCATTATTCCGTGTTCG
CACGAGTTCGTGGACTAAACACGTGGAAAGAAGGCTTGCCACCCTAGGAC
TGCGCATGATTTCCATTCAAAAAGGCGGCAACTATTTACCCCGTGCAGCC
TCTCACGTACTTTCCCATGCACATACTTCAATTCAAATAACTCACAAAGA
CCTCCGCATTATTTTCGTAGACTGGTCGGTCATCGGAGCTGTTCATGAAT
CTCTTCTTGAAAAGACAGTACCATATTGAGACTGGGTGCTAATTATAAAG
GGATACATGTATGATACTTCTCTGTTCTAATTTTGCAACGTAACATAGTA
CTGAAAATGAGCTAGCCGGCAGCATGGTCTGCAGCTTGCCTGTCTCCTGT
GCGTTCTTTTCTGGCCTTGTTTAATGCACTGTTCTATTTCCTACTCTCTG
TAGAATAGCGCTTTGAAATAGTTGAATGTGCCATACTAGCGAAGAAGGAA
CTTTAAACGCCTAGACATGAAGAAAATGATACGTTAGTCGTTGCTACCAA
GAATTTCTGCTATAAAAGCAATTTAGTTTCCTTACATCTTAGGATATAAC
CCAAAGGTGTGTAAAACGCAGAGGTGCTTTATAGGTTTATCGATACAAAA
ATCAAAAGTCTGTGACACAAGACTAAGTCTGAATCGTGATGCAAAATGTT
TATATAATCTTGTAACCATCCGCAAGGTGGCAAGCGATCCCTTTGTAGTA
GATGCAGAGTTAAAAGAGGGGAGTAGAGAGGCAAGCCAACTAAAAAGAAC
ACGTCAATCGTAGGTGATACCAATCCAACGGTGACACCAACATGCAACTA
AAAATATACAATTAGAAATACAGATGAACCTAAACCAGTCTGACTTCGCT
TTTAATGGATGCAAGAGCCGAAGAAGACTGATATCCAGAGCGAAGCCGAC
GATACCGACATACAACTAGACATATAACAGTTGAAATATTGATGGAGCTA
AACCGGAACTGAGACCGACTTCTGTTCACTCCCTTTGTAGTGGATGCAAG
AGCTTAAAAGGACTGAAGAGCAGCGAGCCGAAGTGGACGAAACAAAGTCA
GTGATACCAACATACCCGTGGACTGGTGTTACCGACGAGCACGTCAAACC
TGAACACCTGGGAAGAAAAAAGCAAAAATACTTGGGAAGAAAATTAATCT
GTACATGTAGTCTTTGTGTCTTTAGATTTCAGATTTAATGTTATAGCTTC
CAATATTATTTGTAATATTATTGTATTTTCATGATCATTATAACCATATC
TAACTTTTGGAGAGCGTAAATTTAAGAAGTTCAAATGTTTCACGTCGCCC
ATGCCGTGCTGCTCCTTTCCATTCACGGTCTAAGACTAAATATAGTGCGT
TCTCTTTGGCATCCAGATCATAGTGTCAGTGGCTGATGATCTCATTAACT
TTTCTACAAACAATGTAATCATTTCAATCATCACATTTGCTCAGATAACA
TTTTATTGTTGATATTTATCATCTAACTTGATTCCTGTATCTGGTTGTCA
CGCTGTACACGTATTGTCACCGATATCTGTCAATGATCAATATAATTTCC
AAGTTTAGTTCTCAGCTTGTTCACACTCAGGCTGCAGAACTCCTCGCTGA
AGACAACCTGTTGAGGTTCAGAGTACATGCTCCTACTTAAAGCAATGGCA
GAACTTAAAGCATAAGCTGTTCCAATGGGGGGCTAATT

Coding sequence (CDS) from alignment at Sc0000066:1233738..1236925-

>transcript:BL72095_cuf1 ID=transcript:BL72095_cuf1|Name=transcript:BL72095_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1560bp|location=Sequence derived from alignment at Sc0000066:1233738..1236925- (Branchiostoma lanceolatum)
ATGACGAAGAGCACTAAGCCCTACCCTCGCTCCAAGAGCCCTCATCAACC
AAGACGGCGAGCAGTGAGCCCCTACCCCTCGCTCAAGAATCCCTCACTAT
CAACGACGGAACTCAGGCTGGAGGACTTAAACCAGATGGCCGCTACTCCT
GAAGCCACGATGGAGGAGGTTCGGCGGCACCAGGCACAGAAGTGGATGCA
AGAGCTTAAAAGGACTGAAGAGCAGCGAGCCGAAGTGGACGAAACAAAGT
CAGTGATACCAACATACCCGTGGACTGGTGTTACCGACGAGCACGTCAAA
CCTGAACACCTGGGAAGAAAAAAGCAAAAATACTTGGGAAGAAAATTAAT
CTGTACATGTAGTCTTTGTGTCTTTAGATTTCAGATTTAAATGACGAAGA
GCACTAAGCCCTACCCTCGCTCCAAGAGCCCTCATCAACCAAGACGGCGA
GCAGTGAGCCCCTACCCCTCGCTCAAGAATCCCTCACTATCAACGACGGA
ACTCAGGCTGGAGGACTTAAACCAGATGGCCGCTACTCCTGAAGCCACGA
TGGAGGAGGTTCGGCGGCACCAGGCACAGAAGTGGATGCAAGAGCTTAAA
AGGACTGAAGAGCAGCGAGCCGAAGTGGACGAAACAAAGTCAGTGATACC
AACATACCCGTGGACTGGTGTTACCGACGAGCACGTCAAACCTGAACACC
TGGGAAGAAAAAAGCAAAAATACTTGGGAAGAAAATTAATCTGTACATGT
AGTCTTTGTGTCTTTAGATTTCAGATTTAAATGACGAAGAGCACTAAGCC
CTACCCTCGCTCCAAGAGCCCTCATCAACCAAGACGGCGAGCAGTGAGCC
CCTACCCCTCGCTCAAGAATCCCTCACTATCAACGACGGAACTCAGGCTG
GAGGACTTAAACCAGATGGCCGCTACTCCTGAAGCCACGATGGAGGAGGT
TCGGCGGCACCAGGCACAGAAGTGGATGCAAGAGCTTAAAAGGACTGAAG
AGCAGCGAGCCGAAGTGGACGAAACAAAGTCAGTGATACCAACATACCCG
TGGACTGGTGTTACCGACGAGCACGTCAAACCTGAACACCTGGGAAGAAA
AAAGCAAAAATACTTGGGAAGAAAATTAATCTGTACATGTAGTCTTTGTG
TCTTTAGATTTCAGATTTAAATGACGAAGAGCACTAAGCCCTACCCTCGC
TCCAAGAGCCCTCATCAACCAAGACGGCGAGCAGTGAGCCCCTACCCCTC
GCTCAAGAATCCCTCACTATCAACGACGGAACTCAGGCTGGAGGACTTAA
ACCAGATGGCCGCTACTCCTGAAGCCACGATGGAGGAGGTTCGGCGGCAC
CAGGCACAGAAGTGGATGCAAGAGCTTAAAAGGACTGAAGAGCAGCGAGC
CGAAGTGGACGAAACAAAGTCAGTGATACCAACATACCCGTGGACTGGTG
TTACCGACGAGCACGTCAAACCTGAACACCTGGGAAGAAAAAAGCAAAAA
TACTTGGGAAGAAAATTAATCTGTACATGTAGTCTTTGTGTCTTTAGATT
TCAGATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72095gene:BL72095Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72095_cuf1transcript:BL72095_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72095_cuf1-E1BL72095_cuf1-E1-1564476830-256777Branchiostoma lanceolatumexon
BL72095_cuf1-E2BL72095_cuf1-E2-1564476830-256774Branchiostoma lanceolatumexon
BL72095_cuf1-E3BL72095_cuf1-E3-1564476830-256772Branchiostoma lanceolatumexon
BL72095_cuf1-E4BL72095_cuf1-E4-1564476830-256770Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000066genomeSc0000066:1233738..1236925 -
Properties
Property NameValue
Transcript idBL72095_cuf1
Biotypeprotein_coding