transcript:BL69166_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL69166_cuf0
Unique Nametranscript:BL69166_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL69166_cuf0

>transcript:BL69166_cuf0-protein ID=transcript:BL69166_cuf0-protein|Name=transcript:BL69166_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=106bp
FDNVTETTSTLRVTWVPPDAVVTGYRIMYGQEEATEQLNPSPGPGERSAL
LEGLQPDTVYKVEIITIGVRQESLPLIGRNATESDECVTVNGFCDQICTN
VPGSYR
Run BLAST on NCBI

mRNA from alignment at Sc0000012:3744817..3745300+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL69166_cuf0 ID=transcript:BL69166_cuf0|Name=transcript:BL69166_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=484bp|location=Sequence derived from alignment at Sc0000012:3744817..3745300+ (Branchiostoma lanceolatum)
TTCGATAATGTGACCGAGACGACGTCCACGCTGAGGGTCACCTGGGTGCC
TCCTGATGCGGTCGTGACCGGATACCGCATCATGTACGGACAGGAGGAGG
CGACAGAACAGCTCAACCCCTCCCCGGGTCCAGGAGAGAGATCTGCTCTG
CTTGAGGGCCTCCAGCCAGACACCGTGTACAAGGTGGAGATCATCACCAT
CGGAGTTCGCCAAGAAAGTCTGCCTCTGATTGGACGAAATGCGACTGGTA
AGTACAAAAAAAAGGTCTAATAGTAATAATGCTGTAGATTCAATGTCATT
TCACTTCACTTTACTTCCTTATTCTTATGATTTTGAAGAAGCCTTAATAG
ATGCTAAGTTTTTCATAATTATAACGTACTTTTTGCCTCCGCTGTGTTCT
ATTGTCTTTCTAGAGTCCGACGAATGTGTGACAGTGAACGGTTTTTGTGA
CCAGATCTGTACGAACGTCCCGGGCAGCTACAGG

Coding sequence (CDS) from alignment at Sc0000012:3744817..3745300+

>transcript:BL69166_cuf0 ID=transcript:BL69166_cuf0|Name=transcript:BL69166_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=636bp|location=Sequence derived from alignment at Sc0000012:3744817..3745300+ (Branchiostoma lanceolatum)
TTCGATAATGTGACCGAGACGACGTCCACGCTGAGGGTCACCTGGGTGCC
TCCTGATGCGGTCGTGACCGGATACCGCATCATGTACGGACAGGAGGAGG
CGACAGAACAGCTCAACCCCTCCCCGGGTCCAGGAGAGAGATCTGCTCTG
CTTGAGGGCCTCCAGCCAGACACCGTGTACAAGGTGGAGATCATCACCAT
CGGAGTTCGCCAAGAAAGTCTGCCTCTGATTGGACGAAATGCGACTGAGT
CCGACGAATGTGTGACAGTGAACGGTTTTTGTGACCAGATCTGTACGAAC
GTCCCGGGCAGCTACAGGTTCGATAATGTGACCGAGACGACGTCCACGCT
GAGGGTCACCTGGGTGCCTCCTGATGCGGTCGTGACCGGATACCGCATCA
TGTACGGACAGGAGGAGGCGACAGAACAGCTCAACCCCTCCCCGGGTCCA
GGAGAGAGATCTGCTCTGCTTGAGGGCCTCCAGCCAGACACCGTGTACAA
GGTGGAGATCATCACCATCGGAGTTCGCCAAGAAAGTCTGCCTCTGATTG
GACGAAATGCGACTGAGTCCGACGAATGTGTGACAGTGAACGGTTTTTGT
GACCAGATCTGTACGAACGTCCCGGGCAGCTACAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL69166gene:BL69166Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL69166_cuf0-E1BL69166_cuf0-E1-1564476830-111671Branchiostoma lanceolatumexon
BL69166_cuf0-E2BL69166_cuf0-E2-1564476830-111673Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL69166_cuf0transcript:BL69166_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000012genomeSc0000012:3744817..3745300 +
Properties
Property NameValue
Transcript idBL69166_cuf0
Biotypeprotein_coding