transcript:BL69161_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL69161_cuf0
Unique Nametranscript:BL69161_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL69161_cuf0

>transcript:BL69161_cuf0-protein ID=transcript:BL69161_cuf0-protein|Name=transcript:BL69161_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=125bp
ISDQSTITSTICHCNHLTAFGSDFATPPNTVDFGALTLSDLRDNGAVLTA
IFVEFCLFLLTLITMKIIDLRSKKKKNPSINLDDLQSDFRYRLHLWTGTA
KHAGTTSNVAFNLYGDAANSGVRVV
Run BLAST on NCBI

mRNA from alignment at Sc0000012:3753058..3753542+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL69161_cuf0 ID=transcript:BL69161_cuf0|Name=transcript:BL69161_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=485bp|location=Sequence derived from alignment at Sc0000012:3753058..3753542+ (Branchiostoma lanceolatum)
GATAAGTGATCAGTCTACTATTACCAGCACCATCTGTCACTGCAACCATC
TGACGGCTTTCGGAAGTGACTTCGCCACACCACCAAACACGGTCGACTTC
GGGGCGTTAACGCTTAGTGATTTACGTGACAACGGCGCGGTTTTGACAGC
CATCTTCGTGGAGTTCTGCCTCTTTCTGCTCACGTTGATTACAATGAAGA
TTATTGACCTTAGATCAAAGAAGAAGGTACGTAGGCAATGTCGATAATTT
CAAGAACGGCGTGGGACTTGTTGTCTATCAGCTTAGAGTCTTCTTTTTTT
TCTAAATGTTCGATTTCATCATACCTCCTTTCAGAAAAATCCTTCAATCA
ACCTGGACGACCTGCAGAGCGATTTTCGGTACCGTCTCCATCTTTGGACA
GGCACCGCTAAGCATGCTGGGACGACGTCTAACGTTGCCTTCAACCTGTA
CGGAGATGCAGCAAACTCTGGAGTGAGAGTGGTCA

Coding sequence (CDS) from alignment at Sc0000012:3753058..3753542+

>transcript:BL69161_cuf0 ID=transcript:BL69161_cuf0|Name=transcript:BL69161_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=750bp|location=Sequence derived from alignment at Sc0000012:3753058..3753542+ (Branchiostoma lanceolatum)
ATAAGTGATCAGTCTACTATTACCAGCACCATCTGTCACTGCAACCATCT
GACGGCTTTCGGAAGTGACTTCGCCACACCACCAAACACGGTCGACTTCG
GGGCGTTAACGCTTAGTGATTTACGTGACAACGGCGCGGTTTTGACAGCC
ATCTTCGTGGAGTTCTGCCTCTTTCTGCTCACGTTGATTACAATGAAGAT
TATTGACCTTAGATCAAAGAAGAAGAAAAATCCTTCAATCAACCTGGACG
ACCTGCAGAGCGATTTTCGGTACCGTCTCCATCTTTGGACAGGCACCGCT
AAGCATGCTGGGACGACGTCTAACGTTGCCTTCAACCTGTACGGAGATGC
AGCAAACTCTGGAGTGAGAGTGGTCATAAGTGATCAGTCTACTATTACCA
GCACCATCTGTCACTGCAACCATCTGACGGCTTTCGGAAGTGACTTCGCC
ACACCACCAAACACGGTCGACTTCGGGGCGTTAACGCTTAGTGATTTACG
TGACAACGGCGCGGTTTTGACAGCCATCTTCGTGGAGTTCTGCCTCTTTC
TGCTCACGTTGATTACAATGAAGATTATTGACCTTAGATCAAAGAAGAAG
AAAAATCCTTCAATCAACCTGGACGACCTGCAGAGCGATTTTCGGTACCG
TCTCCATCTTTGGACAGGCACCGCTAAGCATGCTGGGACGACGTCTAACG
TTGCCTTCAACCTGTACGGAGATGCAGCAAACTCTGGAGTGAGAGTGGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL69161gene:BL69161Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL69161_cuf0-E1BL69161_cuf0-E1-1564476830-111719Branchiostoma lanceolatumexon
BL69161_cuf0-E2BL69161_cuf0-E2-1564476830-111722Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL69161_cuf0transcript:BL69161_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000012genomeSc0000012:3753058..3753542 +
Properties
Property NameValue
Transcript idBL69161_cuf0
Biotypeprotein_coding