transcript:BL69010_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL69010_cuf0
Unique Nametranscript:BL69010_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL69010_cuf0

>transcript:BL69010_cuf0-protein ID=transcript:BL69010_cuf0-protein|Name=transcript:BL69010_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MAADFAREDGITLYAVGVGTEVDIRELTDLAGDPSRVYNVEDFQSLSAFA
DQGPLQTELCLNETPTTTDNQTPGPSGFPGSSRSGPISSEGDYFWRDLRS
GALIQ
Run BLAST on NCBI

mRNA from alignment at xfSc0010555:237..1060-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL69010_cuf0 ID=transcript:BL69010_cuf0|Name=transcript:BL69010_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=824bp|location=Sequence derived from alignment at xfSc0010555:237..1060- (Branchiostoma lanceolatum)
CTCATATATACGTTGTCGGCGGATTGTGATATCACATAAACCGATCGTTG ACCTTTCCACAGATTGCCATCATGATCACAGACGGTAAAAACAACACTGA GTCGCTAAAGTCACGTGAATACAAACACCCCTTTAGGTACACCATAACCA ATGGAAGCATTCAGCACCAAGGACAGACGACAGCCTTCAGTTATAACTAC TCATATGTATGTTGTCAGCGGATTGTGATATCACATATACCGATTGTTGA CGTTTCCACAGATTGCCATCGTGATCACAGACGGTAAGAACAACCCTGAG TCGCGGGTCGGGGTGCGCATGGCGGCAGACTTTGCGCGGGAGGATGGGAT CACTCTGTACGCTGTGGGGGTGGGCACCGAGGTGGACATCCGGGAACTTA CAGACCTGGCGGGCGATCCAAGCAGAGTCTACAAGTAAGAACGGTTCCAT TATCTGAGGGAGGGATGGTCATAGAATCGTTCCAATGAAAAGACAAGGAG AACCAGCAGAGGCTGTACAAGCAGATGCTCAGAGTTAAACCATAGTCACA AAACAAAGTGGCTGCAAATATTCAAAAACACTGTAAAATGTTCTGAAGCT CTGCGTTTCTCTTGTTCCTTCCCAGTGTTGAGGACTTTCAGTCGCTATCG GCTTTTGCAGACCAGGGTCCACTGCAGACGGAGTTATGTCTCAATGAGAC ACCAACAACAACAGATAACCAAACACCCGGACCGTCAGGATTCCCGGGGA GCAGCCGCTCGGGCCCTATTTCCTCAGAGGGTGATTATTTTTGGCGAGAC CTCAGGAGCGGAGCACTTATACAG

Coding sequence (CDS) from alignment at xfSc0010555:237..1060-

>transcript:BL69010_cuf0 ID=transcript:BL69010_cuf0|Name=transcript:BL69010_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=630bp|location=Sequence derived from alignment at xfSc0010555:237..1060- (Branchiostoma lanceolatum)
ATGGCGGCAGACTTTGCGCGGGAGGATGGGATCACTCTGTACGCTGTGGG
GGTGGGCACCGAGGTGGACATCCGGGAACTTACAGACCTGGCGGGCGATC
CAAGCAGAGTCTACAATGTTGAGGACTTTCAGTCGCTATCGGCTTTTGCA
GACCAGGGTCCACTGCAGACGGAGTTATGTCTCAATGAGACACCAACAAC
AACAGATAACCAAACACCCGGACCGTCAGGATTCCCGGGGAGCAGCCGCT
CGGGCCCTATTTCCTCAGAGGGTGATTATTTTTGGCGAGACCTCAGGAGC
GGAGCACTTATACAGATGGCGGCAGACTTTGCGCGGGAGGATGGGATCAC
TCTGTACGCTGTGGGGGTGGGCACCGAGGTGGACATCCGGGAACTTACAG
ACCTGGCGGGCGATCCAAGCAGAGTCTACAATGTTGAGGACTTTCAGTCG
CTATCGGCTTTTGCAGACCAGGGTCCACTGCAGACGGAGTTATGTCTCAA
TGAGACACCAACAACAACAGATAACCAAACACCCGGACCGTCAGGATTCC
CGGGGAGCAGCCGCTCGGGCCCTATTTCCTCAGAGGGTGATTATTTTTGG
CGAGACCTCAGGAGCGGAGCACTTATACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL69010gene:BL69010Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL69010_cuf0-E1BL69010_cuf0-E1-1564476830-540734Branchiostoma lanceolatumexon
BL69010_cuf0-E2BL69010_cuf0-E2-1564476830-540731Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL69010_cuf0transcript:BL69010_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0010555genomexfSc0010555:237..1060 -
Properties
Property NameValue
Transcript idBL69010_cuf0
Biotypeprotein_coding