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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL16921_cuf1 >transcript:BL16921_cuf1-protein ID=transcript:BL16921_cuf1-protein|Name=transcript:BL16921_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=144bp
FHVVPENTKKRRNNGRSKKGRGHVRPIRCTNCGRCVPKDKAIKKFVIRNI
VEAAAVRDISEASVYEVYALPKLYAKLHYCVSCAIHSKVVRNRSREARKD
RTPPPRFRPPGMGQRGPGGQGGQGGGGGPGGGGQGGGGGGPPRT Run BLAST on NCBI mRNA from alignment at Sc0000034:830477..833228+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL16921_cuf1 ID=transcript:BL16921_cuf1|Name=transcript:BL16921_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2752bp|location=Sequence derived from alignment at Sc0000034:830477..833228+ (Branchiostoma lanceolatum)
CTTTTCACGTGGTGCCAGAAAATGTGAAAATTTTCGTTAATTCTGAATGA
TTACGCATGTTTAAGGATATCCGATAGATATCGCCAAACACCTAGAAGGT
TTTTCGGTATATTTCCTGGGGTAAATTTCTCTAACGATGAGGGAAAATGT
GAAAATAATCATGTCGAAATCAACCCAAAATGGCTAAAGTGAAATCCTTA
GGGTGGGGAGGGGGGCGCTAACCACATGTCTCCAAACTTGGAGTCTGTGC
CGAGTTGTGGGAAAGATAATGATGCCATGCACCTAGGAGACTCTTATAAA
CGTTAAGTATAGGAAGAATAACCATACATATACATATATTCCCATGAACG
ATTTTTAGGAATTGATTATATTGCAATCGTAAATAATTATCTGAAGAGGA
AGATGGTCAGTTTTTTTCATCCAGATTATTTACACGCATTTTTCACCCGA
ACCAAAATACTTTTTGAGTGTCGTGCCTAATACAATTAAGTATTATTTAG
ACCATACAGCAACAGTCAGAATTTACACAGCAGTCAAGGTACCTTTCTTC
CTCTGTCTTGATGAGAAGAAATATCCCCATAGTCATATGTTATATGTTAG
ACTATCACTATGTTATGTGCCTTGTTTGCATGTGATTGTCCCACAGACGT
GAATTTGGTAATTGTGATTAAATGTTTTGTTTCTATATAAAGTTTCGGCC
CCGTCAAAGTATTCTCATCTTGTTATAACCCCGCAGACTAAGAAGAGGCG
CAATAACGGACGTTCTAAGAAAGGGCGTGGCCACGTCAGGCCCATCCGCT
GCACCAACTGCGGACGTTGCGTCCCCAAGGACAAGGCCATCAAGAAGTTT
GTCATCCGTAACATCGTGGAGGCCGCGGCTGTGAGGGATATCTCCGAGGC
GAGCGTGTATGAAGGTGAGCGAACCGTTTTTACCTTGTGGTAGATTGAGA
AATAACATCACAGCCAGTACATGATTGCCAATTTTTTCTAACCTATCCAG
GGTTTGATTGAAACTTTCTGTGAAATGGTTGGTTTCCTGTGTTATCCAGT
GTATGCTCTCTCCAAGCTGAACAAGGAAATGCTCTATTTTCCTTGTTTTT
TGTGAAGCGTAATATCTTACCAATAGCTGATCTTCCATCCTTTCCATCCC
AAGCTAAACAGAGAAATGTTAAATTTTCCTTCTAGAAAAAGTGTGCTAAC
TTAGGTCTATTGTATGCCAGGGCTGTCTCTAGCTTTAAATTTTTTTCCGT
CCCACTTATTGTTAGGTAGCCCATGTTGATTTTCGTTGTTGAATCTGCCA
TTTTAAGCTACGAAAATATTTTGTCATCAATTTCATGTCAATTTTTTTGA
CAAATGGGGTGAAATTTTTGTCCGCCCCAACAAGCAAATTTCTATCCCAG
GACTGAGGGACGGGTCTTGGAGACAAGCCTGATTGTATGTGAACCATTAT
CCTGACAAATATCTGATCTTGCATTATTCCGCAGTGTACGCCCTCCCCAA
GCTGTATGCCAAGCTCCACTACTGTGTGAGCTGCGCCATCCATAGCAAGG
TGGTGAGGAACCGGTCACGCGAGGCTCGTAAGGACCGCACCCCCCCACCC
AGGTTCCGCCCACCAGGAGTGAGTAAACCACTGATCCATCCACAGTCTGG
ATTTTATAATTTGATGCCTGGCCACATGTTGTATGATAGGTTTACAGCTG
CAAATTGATAGCATTCTTGGATGTGCTGCACAAAATTTAGCTGTCTTGTT
ATGGAAAAAGTTGCTGTAGATTGGTGTCCACAGTCTGCTCTTGCTGAAAT
TCCTACAACAATAAGATTGTACAACAACTGTGACCAGACATTAACTAGAA
TATGTGCATGGAATGTTAGTGCATGTCCTAAGTCTTTGGCAGACCTAGAT
TGATATATTTGTGCTGTCTCCCCTTGATTGTCTAAAGGAAATCCACTTTT
TTTTCAAACTATTCTAAAAGATGTGTTTATCAGTGAGTTATATATTAGTG
GGACAGTCAACAAAGATGGTAAAAGGAAAGGCCTTACGAAACTGATGCCA
GCAAGTGCTGGTAAAACCTTTCATGACATTGTTCATAACATTTCCACTCA
CTACAGAATGTTCATGCATACATCAATGAAGGTTAGCCATCCATGTAATA
AGCAGTTACGCAAAGGATATGATTTTGGAAATGGATGTTCACACAACTTG
TGATTTTATATTTCTACCCCTACTCATCTCCTCTGTCTATTTTACAGATG
GGCCAGAGAGGCCCAGGCGGCCAAGGTGGCCAGGGCGGCGGCGGCGGCCC
AGGCGGTGGTGGGCAAGGAGGCGGTGGCGGCGGACCCCCCAGGACTTAGA
GCGGAGGCTGTCTACATGTCCCAGCAGATAACACAGGAATAAACACAATA
AACCTGTAACATCAGATCAACTGGACTGTGCATTCTTTTATGGTGTTGAC
ACCTGCTGTCAATGCCTTTAAATTATGTTGCTCAACTTGTATGTAAGGCC
ATGTTGATTCGATTATGTGGATGACATGGAAACCCCAAAACCGATGCGAC
CAACACCCTCCCCTATAAGTTCGTTGTACAGTATCTGTAACAGTATGTCA
AACTAAAGAAACAAATCAAGTAGAGTAATTAAACTCCTTCTGAGCAATGG
CTTGTTTGCCAACAGAAAGCCTTGATATCCTGCTCCTTTTGACAGATTAC
CGTAGTAATCACACAAGCTAGCCCCAGAGACAAGTTGACACAGAAGTTTT
GC Coding sequence (CDS) from alignment at Sc0000034:830477..833228+ >transcript:BL16921_cuf1 ID=transcript:BL16921_cuf1|Name=transcript:BL16921_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1740bp|location=Sequence derived from alignment at Sc0000034:830477..833228+ (Branchiostoma lanceolatum)
TTTCACGTGGTGCCAGAAAATACTAAGAAGAGGCGCAATAACGGACGTTC
TAAGAAAGGGCGTGGCCACGTCAGGCCCATCCGCTGCACCAACTGCGGAC
GTTGCGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCCGTAACATC
GTGGAGGCCGCGGCTGTGAGGGATATCTCCGAGGCGAGCGTGTATGAAGT
GTACGCCCTCCCCAAGCTGTATGCCAAGCTCCACTACTGTGTGAGCTGCG
CCATCCATAGCAAGGTGGTGAGGAACCGGTCACGCGAGGCTCGTAAGGAC
CGCACCCCCCCACCCAGGTTCCGCCCACCAGGAATGGGCCAGAGAGGCCC
AGGCGGCCAAGGTGGCCAGGGCGGCGGCGGCGGCCCAGGCGGTGGTGGGC
AAGGAGGCGGTGGCGGCGGACCCCCCAGGACTTAGTTTCACGTGGTGCCA
GAAAATACTAAGAAGAGGCGCAATAACGGACGTTCTAAGAAAGGGCGTGG
CCACGTCAGGCCCATCCGCTGCACCAACTGCGGACGTTGCGTCCCCAAGG
ACAAGGCCATCAAGAAGTTTGTCATCCGTAACATCGTGGAGGCCGCGGCT
GTGAGGGATATCTCCGAGGCGAGCGTGTATGAAGTGTACGCCCTCCCCAA
GCTGTATGCCAAGCTCCACTACTGTGTGAGCTGCGCCATCCATAGCAAGG
TGGTGAGGAACCGGTCACGCGAGGCTCGTAAGGACCGCACCCCCCCACCC
AGGTTCCGCCCACCAGGAATGGGCCAGAGAGGCCCAGGCGGCCAAGGTGG
CCAGGGCGGCGGCGGCGGCCCAGGCGGTGGTGGGCAAGGAGGCGGTGGCG
GCGGACCCCCCAGGACTTAGTTTCACGTGGTGCCAGAAAATACTAAGAAG
AGGCGCAATAACGGACGTTCTAAGAAAGGGCGTGGCCACGTCAGGCCCAT
CCGCTGCACCAACTGCGGACGTTGCGTCCCCAAGGACAAGGCCATCAAGA
AGTTTGTCATCCGTAACATCGTGGAGGCCGCGGCTGTGAGGGATATCTCC
GAGGCGAGCGTGTATGAAGTGTACGCCCTCCCCAAGCTGTATGCCAAGCT
CCACTACTGTGTGAGCTGCGCCATCCATAGCAAGGTGGTGAGGAACCGGT
CACGCGAGGCTCGTAAGGACCGCACCCCCCCACCCAGGTTCCGCCCACCA
GGAATGGGCCAGAGAGGCCCAGGCGGCCAAGGTGGCCAGGGCGGCGGCGG
CGGCCCAGGCGGTGGTGGGCAAGGAGGCGGTGGCGGCGGACCCCCCAGGA
CTTAGTTTCACGTGGTGCCAGAAAATACTAAGAAGAGGCGCAATAACGGA
CGTTCTAAGAAAGGGCGTGGCCACGTCAGGCCCATCCGCTGCACCAACTG
CGGACGTTGCGTCCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCCGTA
ACATCGTGGAGGCCGCGGCTGTGAGGGATATCTCCGAGGCGAGCGTGTAT
GAAGTGTACGCCCTCCCCAAGCTGTATGCCAAGCTCCACTACTGTGTGAG
CTGCGCCATCCATAGCAAGGTGGTGAGGAACCGGTCACGCGAGGCTCGTA
AGGACCGCACCCCCCCACCCAGGTTCCGCCCACCAGGAATGGGCCAGAGA
GGCCCAGGCGGCCAAGGTGGCCAGGGCGGCGGCGGCGGCCCAGGCGGTGG
TGGGCAAGGAGGCGGTGGCGGCGGACCCCCCAGGACTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000034 | genome | Sc0000034:830477..833228 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL16921_cuf1 |
| Biotype | protein_coding |
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